Wall clock time and date at job start Tue Mar 31 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34743 * 117.00154 * 2 1 4 4 O 1.21510 * 119.99901 * 359.97438 * 3 2 1 5 5 C 1.47420 * 120.00392 * 179.97438 * 3 2 1 6 6 C 1.40173 * 120.87418 * 179.97438 * 5 3 2 7 7 N 1.31943 * 119.00139 * 180.02562 * 6 5 3 8 8 C 1.32684 * 120.90591 * 359.97438 * 7 6 5 9 9 N 1.37909 * 119.03300 * 179.97438 * 8 7 6 10 10 C 1.46854 * 110.99527 * 180.02562 * 9 8 7 11 11 C 1.53037 * 109.51886 * 185.84428 * 10 9 8 12 12 C 1.53126 * 109.27801 * 300.81620 * 11 10 9 13 13 C 1.50698 * 109.52311 * 177.56193 * 12 11 10 14 14 H 1.07998 * 119.99689 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99713 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00304 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99718 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46861 * 90.00901 * 17 15 13 19 19 H 1.48498 * 109.47314 * 210.00155 * 17 15 13 20 20 H 1.48498 * 109.47497 * 330.01074 * 17 15 13 21 21 C 1.53124 * 109.15878 * 57.65645 * 12 11 10 22 22 C 1.46844 * 111.00259 * 304.20824 * 9 8 7 23 23 N 1.32680 * 121.92577 * 0.27572 * 8 7 6 24 24 C 1.31944 * 120.90804 * 359.43953 * 23 8 7 25 25 H 1.09000 * 109.47313 * 300.00308 * 1 2 3 26 26 H 1.09003 * 109.46866 * 60.00701 * 1 2 3 27 27 H 1.09000 * 109.47186 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.49644 * 0.04018 * 6 5 3 29 29 H 1.08994 * 109.46310 * 65.82654 * 10 9 8 30 30 H 1.09004 * 109.45281 * 305.84809 * 10 9 8 31 31 H 1.09000 * 109.50480 * 180.88135 * 11 10 9 32 32 H 1.08992 * 109.50737 * 60.75564 * 11 10 9 33 33 H 1.08999 * 109.51925 * 297.75795 * 12 11 10 34 34 H 0.96995 * 120.00213 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.50059 * 62.28737 * 21 12 11 36 36 H 1.08993 * 109.49981 * 182.40384 * 21 12 11 37 37 H 1.09002 * 109.46133 * 294.17937 * 22 9 8 38 38 H 1.09002 * 109.46211 * 54.14462 * 22 9 8 39 39 H 1.07993 * 120.50058 * 180.25807 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5359 1.2778 0.0006 6 6 4.1912 2.5169 0.0000 7 7 5.5104 2.5429 0.0001 8 6 6.2142 1.4181 0.0011 9 7 7.5914 1.4903 0.0005 10 6 8.1887 0.1487 0.0012 11 6 9.7076 0.2653 0.1475 12 6 10.2654 1.0921 -1.0145 13 6 11.7531 1.2609 -0.8438 14 1 12.2521 0.8225 0.0077 15 6 12.4772 1.9743 -1.7753 16 7 11.8695 2.5079 -2.8125 17 14 14.3212 2.1843 -1.5634 18 1 15.0275 1.0655 -2.2378 19 1 14.7454 3.4729 -2.1673 20 1 14.6569 2.1812 -0.1169 21 6 9.5917 2.4672 -1.0217 22 6 8.0762 2.2863 -1.1342 23 7 5.6318 0.2260 -0.0033 24 6 4.3171 0.1140 0.0022 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.6248 3.4364 -0.0001 29 1 7.9516 -0.3548 -0.9359 30 1 7.7867 -0.4271 0.8349 31 1 10.1521 -0.7298 0.1322 32 1 9.9458 0.7565 1.0908 33 1 10.0612 0.5816 -1.9557 34 1 12.3789 3.0100 -3.4676 35 1 9.8281 2.9930 -0.0966 36 1 9.9535 3.0450 -1.8721 37 1 7.8396 1.7722 -2.0658 38 1 7.5926 3.2631 -1.1257 39 1 3.8500 -0.8597 0.0028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561268183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:59 Heat of formation + Delta-G solvation = -22.867794 kcal Electronic energy + Delta-G solvation = -22714.213935 eV Core-core repulsion = 19236.526009 eV Total energy + Delta-G solvation = -3477.687926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.47742 -40.32480 -38.27390 -36.69431 -34.35771 -33.98338 -32.15874 -30.70953 -30.00676 -28.03018 -26.23167 -24.82563 -24.21105 -22.25369 -22.03953 -21.26947 -18.90272 -18.41089 -17.87090 -17.41147 -16.77109 -16.65925 -16.36086 -15.25148 -14.87029 -14.51433 -14.31615 -14.07879 -13.72189 -13.59581 -13.33535 -12.85634 -12.65971 -12.50439 -12.43183 -11.82803 -11.61215 -11.17945 -11.11968 -11.02810 -10.95591 -10.70520 -10.55997 -10.34841 -10.19732 -10.14451 -9.56451 -9.35391 -9.04017 -8.82734 -8.36743 -8.25856 -6.03551 -4.08880 0.27386 1.02644 2.28400 2.36917 3.26021 3.29091 3.36358 3.39591 3.67818 4.00958 4.34429 4.41329 4.48872 4.69669 4.78948 4.84533 4.87066 5.20549 5.27075 5.48103 5.52295 5.67859 5.85765 5.93469 6.00238 6.02906 6.16449 6.34697 6.45792 6.64741 6.68717 6.77495 6.96080 7.18193 7.29614 7.40279 7.44510 7.68560 7.91760 8.01610 8.07695 8.39300 8.94413 9.56246 11.03124 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.050237 B = 0.002932 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.222456 B = 9547.589971 C = 9840.448331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.357 6.357 3 C 0.529 3.471 4 O -0.510 6.510 5 C -0.297 4.297 6 C 0.248 3.752 7 N -0.536 5.536 8 C 0.531 3.469 9 N -0.448 5.448 10 C 0.070 3.930 11 C -0.112 4.112 12 C 0.044 3.956 13 C -0.511 4.511 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.108 4.108 22 C 0.067 3.933 23 N -0.560 5.560 24 C 0.239 3.761 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.181 0.819 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.050 0.950 36 H 0.103 0.897 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.470 -4.805 4.280 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.273 6.273 3 C 0.374 3.626 4 O -0.399 6.399 5 C -0.306 4.306 6 C 0.077 3.923 7 N -0.254 5.254 8 C 0.178 3.822 9 N -0.164 5.164 10 C -0.056 4.056 11 C -0.150 4.150 12 C 0.026 3.974 13 C -0.549 4.549 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.146 4.146 22 C -0.056 4.056 23 N -0.280 5.280 24 C 0.069 3.931 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.198 0.802 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.276 -4.099 4.519 19.268 hybrid contribution -0.443 -0.161 -0.379 0.605 sum -18.719 -4.260 4.140 19.639 Atomic orbital electron populations 1.23286 0.75728 1.03823 1.02708 1.86528 1.23745 1.32572 1.84503 1.20565 0.88147 0.81525 0.72413 1.90846 1.66607 1.35915 1.46579 1.20573 0.91422 0.97822 1.20784 1.23333 0.89007 0.96922 0.83062 1.68290 1.07126 1.30319 1.19697 1.21692 0.92159 0.84033 0.84345 1.58199 0.98576 1.18304 1.41340 1.22237 0.96547 0.85105 1.01697 1.21811 0.90633 1.00914 1.01605 1.18755 0.94720 0.91188 0.92744 1.21156 0.92198 1.33147 1.08406 0.92546 1.24972 0.98360 0.95527 0.95140 1.69845 1.35534 1.35627 1.12129 0.86599 0.85681 0.77445 0.78305 1.20760 1.21264 1.19924 1.21814 0.87632 1.01839 1.03315 1.22557 1.00307 0.96047 0.86733 1.68632 1.11895 1.26964 1.20539 1.23489 0.88237 0.98427 0.82991 0.91768 0.91743 0.87899 0.80244 0.93039 0.90588 0.91976 0.92208 0.95658 0.92948 0.93134 0.87851 0.94020 0.90107 0.80381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.36 -3.35 9.91 -40.61 -0.40 -3.76 16 3 C 0.53 6.06 7.90 34.47 0.27 6.33 16 4 O -0.51 -6.83 16.22 -19.27 -0.31 -7.14 16 5 C -0.30 -3.57 5.90 -104.71 -0.62 -4.19 16 6 C 0.25 3.22 10.87 -16.78 -0.18 3.04 16 7 N -0.54 -8.55 9.61 -13.64 -0.13 -8.68 16 8 C 0.53 8.95 7.16 -323.04 -2.31 6.64 16 9 N -0.45 -8.26 4.70 -175.48 -0.83 -9.09 16 10 C 0.07 1.25 4.62 -3.83 -0.02 1.24 16 11 C -0.11 -2.23 5.32 -26.65 -0.14 -2.38 16 12 C 0.04 1.05 2.16 -91.64 -0.20 0.86 16 13 C -0.51 -13.53 8.56 -34.44 -0.29 -13.82 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 16 N -0.89 -24.66 11.37 55.43 0.63 -24.03 16 17 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.11 -2.44 5.12 -26.65 -0.14 -2.57 16 22 C 0.07 1.31 5.32 -3.83 -0.02 1.29 16 23 N -0.56 -8.43 8.62 -13.64 -0.12 -8.55 16 24 C 0.24 2.84 10.90 -16.78 -0.18 2.66 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.18 1.94 7.74 -52.49 -0.41 1.53 16 29 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 30 H 0.08 1.26 7.67 -51.93 -0.40 0.86 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.10 2.59 6.17 -51.93 -0.32 2.27 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.51 7.53 -51.93 -0.39 1.12 16 39 H 0.18 1.53 7.70 -52.49 -0.40 1.13 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -29.69 327.09 -9.37 -39.06 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.26 Total: -0.51 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.86 Total: 1.95 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.44 Total: -50.35 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.71 Total: -10.90 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.69 -9.37 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561268183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.193 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds