Wall clock time and date at job start Tue Mar 31 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34743 * 117.00154 * 2 1 4 4 O 1.21510 * 119.99901 * 359.97438 * 3 2 1 5 5 C 1.47420 * 120.00392 * 179.97438 * 3 2 1 6 6 C 1.40173 * 120.87418 * 179.97438 * 5 3 2 7 7 N 1.31943 * 119.00139 * 180.02562 * 6 5 3 8 8 C 1.32684 * 120.90591 * 359.97438 * 7 6 5 9 9 N 1.37909 * 119.03300 * 179.97438 * 8 7 6 10 10 C 1.46854 * 110.99527 * 180.02562 * 9 8 7 11 11 C 1.53037 * 109.51886 * 185.84428 * 10 9 8 12 12 C 1.53126 * 109.27801 * 300.81620 * 11 10 9 13 13 C 1.50698 * 109.52311 * 177.56193 * 12 11 10 14 14 H 1.07998 * 119.99689 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99713 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00304 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99718 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46861 * 90.00901 * 17 15 13 19 19 H 1.48498 * 109.47314 * 210.00155 * 17 15 13 20 20 H 1.48498 * 109.47497 * 330.01074 * 17 15 13 21 21 C 1.53124 * 109.15878 * 57.65645 * 12 11 10 22 22 C 1.46844 * 111.00259 * 304.20824 * 9 8 7 23 23 N 1.32680 * 121.92577 * 0.27572 * 8 7 6 24 24 C 1.31944 * 120.90804 * 359.43953 * 23 8 7 25 25 H 1.09000 * 109.47313 * 300.00308 * 1 2 3 26 26 H 1.09003 * 109.46866 * 60.00701 * 1 2 3 27 27 H 1.09000 * 109.47186 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.49644 * 0.04018 * 6 5 3 29 29 H 1.08994 * 109.46310 * 65.82654 * 10 9 8 30 30 H 1.09004 * 109.45281 * 305.84809 * 10 9 8 31 31 H 1.09000 * 109.50480 * 180.88135 * 11 10 9 32 32 H 1.08992 * 109.50737 * 60.75564 * 11 10 9 33 33 H 1.08999 * 109.51925 * 297.75795 * 12 11 10 34 34 H 0.96995 * 120.00213 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.50059 * 62.28737 * 21 12 11 36 36 H 1.08993 * 109.49981 * 182.40384 * 21 12 11 37 37 H 1.09002 * 109.46133 * 294.17937 * 22 9 8 38 38 H 1.09002 * 109.46211 * 54.14462 * 22 9 8 39 39 H 1.07993 * 120.50058 * 180.25807 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5359 1.2778 0.0006 6 6 4.1912 2.5169 0.0000 7 7 5.5104 2.5429 0.0001 8 6 6.2142 1.4181 0.0011 9 7 7.5914 1.4903 0.0005 10 6 8.1887 0.1487 0.0012 11 6 9.7076 0.2653 0.1475 12 6 10.2654 1.0921 -1.0145 13 6 11.7531 1.2609 -0.8438 14 1 12.2521 0.8225 0.0077 15 6 12.4772 1.9743 -1.7753 16 7 11.8695 2.5079 -2.8125 17 14 14.3212 2.1843 -1.5634 18 1 15.0275 1.0655 -2.2378 19 1 14.7454 3.4729 -2.1673 20 1 14.6569 2.1812 -0.1169 21 6 9.5917 2.4672 -1.0217 22 6 8.0762 2.2863 -1.1342 23 7 5.6318 0.2260 -0.0033 24 6 4.3171 0.1140 0.0022 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.6248 3.4364 -0.0001 29 1 7.9516 -0.3548 -0.9359 30 1 7.7867 -0.4271 0.8349 31 1 10.1521 -0.7298 0.1322 32 1 9.9458 0.7565 1.0908 33 1 10.0612 0.5816 -1.9557 34 1 12.3789 3.0100 -3.4676 35 1 9.8281 2.9930 -0.0966 36 1 9.9535 3.0450 -1.8721 37 1 7.8396 1.7722 -2.0658 38 1 7.5926 3.2631 -1.1257 39 1 3.8500 -0.8597 0.0028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561268183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:58 Heat of formation + Delta-G solvation = -39.042371 kcal Electronic energy + Delta-G solvation = -22714.915317 eV Core-core repulsion = 19236.526009 eV Total energy + Delta-G solvation = -3478.389308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.59288 -41.26269 -39.69801 -37.55044 -36.03839 -35.09532 -33.78345 -32.12543 -31.60537 -28.79447 -27.83605 -25.94423 -25.55817 -23.70846 -23.59480 -22.34034 -20.58793 -19.38459 -19.06211 -18.50271 -18.35991 -17.67572 -17.46452 -16.60784 -16.46075 -15.92143 -15.52984 -15.08968 -14.97298 -14.73009 -14.56851 -14.42135 -14.17219 -14.11174 -13.21379 -13.19900 -12.96828 -12.80297 -12.76957 -12.37303 -12.20026 -12.10437 -11.99971 -11.80849 -11.65730 -11.56902 -11.21597 -10.93424 -10.73883 -10.40265 -10.35437 -9.57642 -8.07895 -6.20179 -0.79907 -0.00059 1.31090 1.43167 1.44936 1.54347 1.57324 2.03453 2.45516 2.58272 2.95266 3.20190 3.36077 3.48014 3.59627 3.93279 4.10108 4.11647 4.26624 4.34652 4.39046 4.39498 4.57566 4.62504 4.70101 4.77324 4.89362 4.93375 4.99202 5.15402 5.19126 5.20938 5.46252 5.53041 5.60495 5.67439 5.97535 6.09778 6.11743 6.39128 6.58028 6.90150 6.90946 7.47854 8.97289 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.050237 B = 0.002932 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.222456 B = 9547.589971 C = 9840.448331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.536 3.464 4 O -0.531 6.531 5 C -0.285 4.285 6 C 0.243 3.757 7 N -0.557 5.557 8 C 0.516 3.484 9 N -0.462 5.462 10 C 0.083 3.917 11 C -0.103 4.103 12 C 0.041 3.959 13 C -0.530 4.530 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.952 3.048 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.269 1.269 21 C -0.096 4.096 22 C 0.085 3.915 23 N -0.570 5.570 24 C 0.244 3.756 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.135 0.865 28 H 0.199 0.801 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.055 0.945 33 H -0.002 1.002 34 H 0.261 0.739 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.086 0.914 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.237 -5.957 5.091 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.381 3.619 4 O -0.421 6.421 5 C -0.293 4.293 6 C 0.074 3.926 7 N -0.276 5.276 8 C 0.162 3.838 9 N -0.179 5.179 10 C -0.043 4.043 11 C -0.140 4.140 12 C 0.023 3.977 13 C -0.568 4.568 14 H 0.072 0.928 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.778 3.222 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.194 1.194 21 C -0.135 4.135 22 C -0.040 4.040 23 N -0.290 5.290 24 C 0.076 3.924 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.154 0.846 28 H 0.216 0.784 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.016 0.984 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.104 0.896 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -20.099 -5.276 5.344 21.456 hybrid contribution -0.108 0.146 -0.639 0.664 sum -20.206 -5.130 4.705 21.372 Atomic orbital electron populations 1.23630 0.73755 1.06065 1.02815 1.86515 1.25565 1.31074 1.83799 1.20376 0.87713 0.81887 0.71927 1.90849 1.66945 1.36806 1.47548 1.20677 0.92095 0.97537 1.18959 1.23671 0.88202 0.98306 0.82421 1.68251 1.08446 1.30394 1.20463 1.21538 0.91481 0.85008 0.85738 1.58099 1.00136 1.18286 1.41411 1.22070 0.94721 0.85289 1.02217 1.21656 0.92432 1.00464 0.99493 1.18718 0.93945 0.92101 0.92945 1.21531 0.93858 1.33083 1.08326 0.92765 1.25709 1.02422 0.95393 0.94984 1.69980 1.36879 1.36120 1.12721 0.85647 0.80851 0.77340 0.78351 1.20252 1.21099 1.19406 1.21529 0.90053 1.00623 1.01285 1.22191 0.97856 0.96678 0.87286 1.68625 1.13376 1.26062 1.20917 1.24051 0.87087 0.99875 0.81412 0.91641 0.91729 0.84649 0.78432 0.93385 0.88748 0.91136 0.92664 0.98428 0.93023 0.94291 0.90733 0.94716 0.89558 0.76808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.49 16 2 O -0.35 -5.48 9.91 -56.54 -0.56 -6.04 16 3 C 0.54 10.86 7.90 70.24 0.56 11.42 16 4 O -0.53 -13.08 16.22 19.80 0.32 -12.76 16 5 C -0.28 -6.14 5.90 -19.92 -0.12 -6.26 16 6 C 0.24 5.93 10.87 85.15 0.93 6.86 16 7 N -0.56 -17.25 9.61 -197.08 -1.89 -19.14 16 8 C 0.52 16.89 7.16 261.57 1.87 18.77 16 9 N -0.46 -16.93 4.70 -709.09 -3.34 -20.26 16 10 C 0.08 2.91 4.62 86.32 0.40 3.31 16 11 C -0.10 -4.11 5.32 30.65 0.16 -3.95 16 12 C 0.04 2.03 2.16 -11.46 -0.02 2.00 16 13 C -0.53 -28.63 8.56 25.60 0.22 -28.41 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 15 C 0.01 0.73 5.31 84.65 0.45 1.18 16 16 N -0.92 -52.05 11.37 21.45 0.24 -51.81 16 17 Si 0.95 43.19 29.54 68.60 2.03 45.21 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 C -0.10 -4.52 5.12 30.65 0.16 -4.36 16 22 C 0.08 3.35 5.32 86.33 0.46 3.81 16 23 N -0.57 -16.02 8.62 -197.08 -1.70 -17.72 16 24 C 0.24 5.12 10.90 85.15 0.93 6.04 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.20 3.95 7.74 -2.91 -0.02 3.93 16 29 H 0.05 1.70 8.09 -2.39 -0.02 1.68 16 30 H 0.09 2.96 7.67 -2.38 -0.02 2.94 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 3.92 6.17 -2.39 -0.01 3.90 16 37 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 3.28 7.53 -2.39 -0.02 3.26 16 39 H 0.22 2.81 7.70 -2.91 -0.02 2.79 16 Total: -1.00 -64.50 327.09 3.34 -61.16 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.06 Total: 9.47 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 7.18 Total: 11.89 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -6.68 Total: -108.93 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.24 Total: -18.80 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -64.50 3.34 -61.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561268183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.113 kcal (2) G-P(sol) polarization free energy of solvation -64.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds