Wall clock time and date at job start Tue Mar 31 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35980 * 116.99852 * 2 1 4 4 C 1.38778 * 120.50007 * 359.97438 * 3 2 1 5 5 C 1.38791 * 118.45243 * 180.02562 * 4 3 2 6 6 C 1.38066 * 119.35209 * 359.97438 * 5 4 3 7 7 N 1.31971 * 120.95296 * 0.02562 * 6 5 4 8 8 C 1.32264 * 121.69337 * 359.97438 * 7 6 5 9 9 N 1.39583 * 119.73349 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99489 * 359.97438 * 9 8 7 11 11 O 1.21587 * 120.00200 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99893 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00262 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47190 * 178.28946 * 13 12 10 15 15 C 1.50692 * 115.55209 * 65.14274 * 14 13 12 16 16 H 1.07998 * 120.00475 * 265.40673 * 15 14 13 17 17 C 1.37878 * 119.99744 * 85.40193 * 15 14 13 18 18 N 1.31511 * 120.00592 * 353.55966 * 17 15 14 19 19 Si 1.86806 * 119.99889 * 173.55457 * 17 15 14 20 20 H 1.48500 * 109.46999 * 90.00425 * 19 17 15 21 21 H 1.48499 * 109.47030 * 210.00281 * 19 17 15 22 22 H 1.48494 * 109.47214 * 330.00201 * 19 17 15 23 23 C 1.53002 * 117.49552 * 279.47378 * 14 13 12 24 24 C 1.53005 * 117.49551 * 210.81519 * 14 13 12 25 25 H 1.09000 * 109.47489 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47473 * 300.00072 * 1 2 3 27 27 H 1.09004 * 109.47052 * 59.99987 * 1 2 3 28 28 H 1.08006 * 120.77606 * 359.97438 * 4 3 2 29 29 H 1.07996 * 120.32568 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.52187 * 180.02562 * 6 5 4 31 31 H 0.96992 * 120.00452 * 180.02562 * 9 8 7 32 32 H 0.97001 * 119.99827 * 0.02562 * 12 10 9 33 33 H 1.08996 * 109.47353 * 298.29090 * 13 12 10 34 34 H 1.09004 * 109.46385 * 58.29027 * 13 12 10 35 35 H 0.96995 * 120.00940 * 185.07032 * 18 17 15 36 36 H 1.09000 * 117.50468 * 0.02562 * 23 14 13 37 37 H 1.09004 * 117.49655 * 145.02715 * 23 14 13 38 38 H 1.09001 * 117.49618 * 214.97525 * 24 14 13 39 39 H 1.09000 * 117.50084 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.3006 2.3820 -0.0005 5 6 1.9745 3.5954 -0.0011 6 6 3.3551 3.6028 -0.0005 7 7 4.0399 2.4746 0.0000 8 6 3.4385 1.2966 0.0005 9 7 4.2032 0.1289 0.0016 10 6 5.5488 0.2047 0.0016 11 8 6.0966 1.2902 0.0002 12 7 6.2872 -0.9227 0.0021 13 6 7.7500 -0.8404 0.0016 14 6 8.3402 -2.2513 0.0454 15 6 8.0653 -3.1087 -1.1630 16 1 7.2244 -3.7864 -1.1643 17 6 8.8873 -3.0279 -2.2669 18 7 9.8332 -2.1156 -2.3173 19 14 8.6577 -4.2146 -3.6913 20 1 7.7024 -3.6349 -4.6694 21 1 9.9649 -4.4494 -4.3556 22 1 8.1233 -5.5027 -3.1812 23 6 8.4048 -2.9481 1.4061 24 6 9.6872 -2.4321 0.7483 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2211 2.3495 -0.0014 29 1 1.4243 4.5247 -0.0019 30 1 3.8823 4.5454 -0.0005 31 1 3.7662 -0.7370 0.0016 32 1 5.8502 -1.7887 0.0021 33 1 8.0851 -0.3344 -0.9037 34 1 8.0826 -0.2801 0.8754 35 1 10.3632 -2.0102 -3.1227 36 1 8.0265 -2.4015 2.2699 37 1 8.2490 -4.0267 1.4271 38 1 10.3743 -3.1714 0.3369 39 1 10.1530 -1.5458 1.1791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563833708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:37 Heat of formation + Delta-G solvation = 13.677489 kcal Electronic energy + Delta-G solvation = -22779.475299 eV Core-core repulsion = 19303.372096 eV Total energy + Delta-G solvation = -3476.103204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95895 -39.22727 -38.09460 -36.73573 -34.50829 -33.23024 -31.95076 -31.71235 -29.81351 -27.63676 -26.26535 -25.17737 -23.29875 -22.91784 -21.17983 -20.24740 -19.37074 -18.62083 -17.90228 -17.49529 -16.37466 -16.13801 -15.99228 -15.07913 -15.01372 -14.61507 -14.42755 -14.23404 -13.89173 -13.69799 -13.55386 -13.10800 -12.62507 -12.49692 -11.87081 -11.71086 -11.62507 -11.55464 -10.98158 -10.92839 -10.58769 -10.49072 -10.24291 -10.02558 -9.56852 -9.43323 -8.95246 -8.92486 -8.47033 -8.26583 -8.07894 -7.70569 -6.05068 -4.13717 1.16524 1.24744 2.88089 2.96383 3.27598 3.35385 3.36939 3.61348 4.10793 4.36409 4.41049 4.56305 4.61075 4.86607 4.87752 4.98158 5.15044 5.22583 5.24111 5.32069 5.40560 5.77266 5.98833 6.05700 6.30914 6.37160 6.49994 6.54277 6.62588 6.72336 6.84093 7.10434 7.14615 7.26009 7.37486 7.48387 7.54652 7.83890 8.11034 8.36720 8.64351 8.86847 9.20523 9.52958 11.02741 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.003782 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.449129 B = 7401.946148 C = 7821.588132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.031 3.969 4 C -0.138 4.138 5 C -0.181 4.181 6 C 0.098 3.902 7 N -0.439 5.439 8 C 0.377 3.623 9 N -0.667 5.667 10 C 0.686 3.314 11 O -0.542 6.542 12 N -0.716 5.716 13 C 0.182 3.818 14 C 0.028 3.972 15 C -0.501 4.501 16 H 0.060 0.940 17 C 0.075 3.925 18 N -0.874 5.874 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.211 4.211 24 C -0.147 4.147 25 H 0.101 0.899 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.159 0.841 31 H 0.415 0.585 32 H 0.396 0.604 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.889 6.109 5.125 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.229 6.229 3 C -0.020 4.020 4 C -0.165 4.165 5 C -0.203 4.203 6 C -0.059 4.059 7 N -0.154 5.154 8 C 0.142 3.858 9 N -0.316 5.316 10 C 0.386 3.614 11 O -0.415 6.415 12 N -0.369 5.369 13 C 0.059 3.941 14 C 0.027 3.973 15 C -0.538 4.538 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.509 5.509 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.248 4.248 24 C -0.185 4.185 25 H 0.120 0.880 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.177 0.823 31 H 0.252 0.748 32 H 0.229 0.771 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.025 6.882 5.025 19.038 hybrid contribution -1.686 -1.303 -0.916 2.319 sum -18.710 5.579 4.110 19.952 Atomic orbital electron populations 1.23044 0.78208 1.04105 1.01171 1.86032 1.21497 1.25844 1.89506 1.19403 0.91119 0.85881 1.05577 1.21390 1.00236 0.91521 1.03308 1.21833 0.95658 0.98005 1.04767 1.22625 0.91019 0.96023 0.96222 1.67870 1.37851 0.96156 1.13501 1.17687 0.83894 0.87247 0.96967 1.42797 1.05919 1.07079 1.75804 1.16119 0.80302 0.85731 0.79270 1.90994 1.69775 1.26307 1.54406 1.45196 1.08118 1.06280 1.77352 1.20898 0.75411 0.97586 1.00198 1.19037 0.96438 0.91569 0.90276 1.20325 1.12517 1.22525 0.98459 0.92235 1.24979 0.94497 0.95276 0.98224 1.69967 1.21031 1.32285 1.27653 0.86642 0.77501 0.81657 0.82515 1.20712 1.21169 1.19836 1.23025 1.04900 0.99483 0.97381 1.22491 0.91231 1.01212 1.03550 0.88049 0.92738 0.92715 0.84356 0.84787 0.82348 0.74843 0.77062 0.91017 0.94507 0.92836 0.91619 0.90394 0.89814 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.83 101.05 0.99 1.19 16 2 O -0.32 -3.52 9.75 -19.68 -0.19 -3.71 16 3 C 0.03 0.40 6.72 -38.92 -0.26 0.14 16 4 C -0.14 -1.41 9.14 -39.18 -0.36 -1.77 16 5 C -0.18 -1.84 10.10 -39.44 -0.40 -2.24 16 6 C 0.10 1.30 11.17 -17.55 -0.20 1.10 16 7 N -0.44 -7.78 7.87 -12.22 -0.10 -7.87 16 8 C 0.38 6.20 7.45 -154.44 -1.15 5.05 16 9 N -0.67 -11.19 5.40 -15.67 -0.08 -11.27 16 10 C 0.69 14.16 8.53 -86.92 -0.74 13.41 16 11 O -0.54 -13.20 14.59 5.29 0.08 -13.12 16 12 N -0.72 -14.52 5.48 -65.22 -0.36 -14.88 16 13 C 0.18 4.25 5.50 -4.04 -0.02 4.23 16 14 C 0.03 0.65 1.38 -155.66 -0.21 0.44 16 15 C -0.50 -12.94 8.63 -34.44 -0.30 -13.24 16 16 H 0.06 1.51 7.82 -52.49 -0.41 1.09 16 17 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 18 N -0.87 -24.48 12.91 55.43 0.72 -23.76 16 19 Si 0.89 20.71 29.55 -169.99 -5.02 15.68 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.21 -4.41 9.96 -26.69 -0.27 -4.67 16 24 C -0.15 -3.37 9.42 -26.69 -0.25 -3.63 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.29 7.70 -51.93 -0.40 -0.11 16 27 H 0.05 0.31 7.70 -51.93 -0.40 -0.09 16 28 H 0.14 0.95 6.44 -52.48 -0.34 0.62 16 29 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.42 5.73 8.06 -40.82 -0.33 5.40 16 32 H 0.40 7.21 8.38 -40.82 -0.34 6.87 16 33 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 34 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -33.02 337.55 -8.29 -41.30 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -5.16 Total: 10.62 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -3.26 Total: 1.92 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.18 Total: -57.78 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.11 Total: -16.83 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.02 -8.29 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563833708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.982 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds