Wall clock time and date at job start Tue Mar 31 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35980 * 116.99852 * 2 1 4 4 C 1.38778 * 120.50007 * 359.97438 * 3 2 1 5 5 C 1.38791 * 118.45243 * 180.02562 * 4 3 2 6 6 C 1.38066 * 119.35209 * 359.97438 * 5 4 3 7 7 N 1.31971 * 120.95296 * 0.02562 * 6 5 4 8 8 C 1.32264 * 121.69337 * 359.97438 * 7 6 5 9 9 N 1.39583 * 119.73349 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99489 * 359.97438 * 9 8 7 11 11 O 1.21587 * 120.00200 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99893 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00262 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47190 * 178.28946 * 13 12 10 15 15 C 1.50692 * 115.55209 * 65.14274 * 14 13 12 16 16 H 1.07998 * 120.00475 * 265.40673 * 15 14 13 17 17 C 1.37878 * 119.99744 * 85.40193 * 15 14 13 18 18 N 1.31511 * 120.00592 * 353.55966 * 17 15 14 19 19 Si 1.86806 * 119.99889 * 173.55457 * 17 15 14 20 20 H 1.48500 * 109.46999 * 90.00425 * 19 17 15 21 21 H 1.48499 * 109.47030 * 210.00281 * 19 17 15 22 22 H 1.48494 * 109.47214 * 330.00201 * 19 17 15 23 23 C 1.53002 * 117.49552 * 279.47378 * 14 13 12 24 24 C 1.53005 * 117.49551 * 210.81519 * 14 13 12 25 25 H 1.09000 * 109.47489 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47473 * 300.00072 * 1 2 3 27 27 H 1.09004 * 109.47052 * 59.99987 * 1 2 3 28 28 H 1.08006 * 120.77606 * 359.97438 * 4 3 2 29 29 H 1.07996 * 120.32568 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.52187 * 180.02562 * 6 5 4 31 31 H 0.96992 * 120.00452 * 180.02562 * 9 8 7 32 32 H 0.97001 * 119.99827 * 0.02562 * 12 10 9 33 33 H 1.08996 * 109.47353 * 298.29090 * 13 12 10 34 34 H 1.09004 * 109.46385 * 58.29027 * 13 12 10 35 35 H 0.96995 * 120.00940 * 185.07032 * 18 17 15 36 36 H 1.09000 * 117.50468 * 0.02562 * 23 14 13 37 37 H 1.09004 * 117.49655 * 145.02715 * 23 14 13 38 38 H 1.09001 * 117.49618 * 214.97525 * 24 14 13 39 39 H 1.09000 * 117.50084 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.3006 2.3820 -0.0005 5 6 1.9745 3.5954 -0.0011 6 6 3.3551 3.6028 -0.0005 7 7 4.0399 2.4746 0.0000 8 6 3.4385 1.2966 0.0005 9 7 4.2032 0.1289 0.0016 10 6 5.5488 0.2047 0.0016 11 8 6.0966 1.2902 0.0002 12 7 6.2872 -0.9227 0.0021 13 6 7.7500 -0.8404 0.0016 14 6 8.3402 -2.2513 0.0454 15 6 8.0653 -3.1087 -1.1630 16 1 7.2244 -3.7864 -1.1643 17 6 8.8873 -3.0279 -2.2669 18 7 9.8332 -2.1156 -2.3173 19 14 8.6577 -4.2146 -3.6913 20 1 7.7024 -3.6349 -4.6694 21 1 9.9649 -4.4494 -4.3556 22 1 8.1233 -5.5027 -3.1812 23 6 8.4048 -2.9481 1.4061 24 6 9.6872 -2.4321 0.7483 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2211 2.3495 -0.0014 29 1 1.4243 4.5247 -0.0019 30 1 3.8823 4.5454 -0.0005 31 1 3.7662 -0.7370 0.0016 32 1 5.8502 -1.7887 0.0021 33 1 8.0851 -0.3344 -0.9037 34 1 8.0826 -0.2801 0.8754 35 1 10.3632 -2.0102 -3.1227 36 1 8.0265 -2.4015 2.2699 37 1 8.2490 -4.0267 1.4271 38 1 10.3743 -3.1714 0.3369 39 1 10.1530 -1.5458 1.1791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563833708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:37 Heat of formation + Delta-G solvation = -9.002969 kcal Electronic energy + Delta-G solvation = -22780.458798 eV Core-core repulsion = 19303.372096 eV Total energy + Delta-G solvation = -3477.086702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.03033 -40.62480 -39.04060 -38.49265 -35.85125 -34.93689 -33.95412 -32.69837 -30.84365 -28.28284 -28.04619 -27.07270 -24.40642 -23.89480 -22.95030 -21.71662 -21.23136 -19.77064 -19.14484 -18.61039 -17.88120 -17.37782 -17.03106 -16.65351 -16.31225 -16.29440 -15.69060 -15.52632 -15.23524 -15.04405 -14.63575 -14.43187 -14.30797 -13.68191 -13.45450 -13.27206 -12.91315 -12.84055 -12.35156 -12.33187 -12.29633 -12.02814 -11.81438 -11.57574 -11.41169 -10.83997 -10.45678 -10.42967 -10.21513 -10.02434 -9.82196 -8.80343 -8.08250 -6.21481 0.18028 0.34351 1.42576 1.44865 1.53407 1.54218 2.19868 2.20635 2.43425 2.95028 3.08675 3.19921 3.53110 3.64754 3.85907 4.03487 4.16193 4.26105 4.43236 4.46317 4.51544 4.57254 4.66889 4.74435 4.80015 4.92597 5.00335 5.03089 5.13888 5.28395 5.34197 5.52960 5.58519 5.62389 5.70422 5.79468 5.92224 6.29801 6.38091 6.84602 6.90858 7.30757 7.47810 7.66310 8.99360 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.003782 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.449129 B = 7401.946148 C = 7821.588132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.041 3.959 4 C -0.133 4.133 5 C -0.153 4.153 6 C 0.071 3.929 7 N -0.491 5.491 8 C 0.328 3.672 9 N -0.658 5.658 10 C 0.687 3.313 11 O -0.587 6.587 12 N -0.710 5.710 13 C 0.201 3.799 14 C 0.005 3.995 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.950 3.050 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.262 1.262 23 C -0.175 4.175 24 C -0.157 4.157 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.181 0.819 29 H 0.178 0.822 30 H 0.172 0.828 31 H 0.427 0.573 32 H 0.407 0.593 33 H 0.027 0.973 34 H 0.034 0.966 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.469 5.841 5.625 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C -0.010 4.010 4 C -0.159 4.159 5 C -0.174 4.174 6 C -0.086 4.086 7 N -0.207 5.207 8 C 0.095 3.905 9 N -0.308 5.308 10 C 0.387 3.613 11 O -0.463 6.463 12 N -0.365 5.365 13 C 0.076 3.924 14 C 0.004 3.996 15 C -0.542 4.542 16 H 0.083 0.917 17 C -0.176 4.176 18 N -0.545 5.545 19 Si 0.776 3.224 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.186 1.186 23 C -0.212 4.212 24 C -0.195 4.195 25 H 0.137 0.863 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.198 0.802 29 H 0.195 0.805 30 H 0.189 0.811 31 H 0.265 0.735 32 H 0.242 0.758 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.688 6.586 5.538 22.406 hybrid contribution -0.765 -1.127 -1.038 1.713 sum -21.454 5.458 4.500 22.590 Atomic orbital electron populations 1.23418 0.75638 1.05906 1.02646 1.86023 1.24077 1.25186 1.89161 1.19389 0.89946 0.87488 1.04185 1.21913 1.02146 0.90307 1.01533 1.22283 0.94404 0.99892 1.00828 1.23025 0.92843 0.95356 0.97346 1.67662 1.40545 0.97738 1.14733 1.17916 0.85399 0.86684 1.00531 1.42475 1.04332 1.08322 1.75697 1.16243 0.81520 0.84889 0.78682 1.90951 1.71131 1.27796 1.56402 1.44956 1.07001 1.06924 1.77579 1.20441 0.77166 0.97007 0.97786 1.19046 0.97371 0.91717 0.91454 1.20652 1.12182 1.22256 0.99099 0.91743 1.25713 0.94501 0.96619 1.00793 1.70102 1.22217 1.34061 1.28162 0.85681 0.77050 0.80081 0.79572 1.20832 1.21501 1.18589 1.23007 1.02027 0.99992 0.96205 1.22436 0.91398 1.01299 1.04404 0.86341 0.91033 0.91277 0.80167 0.80484 0.81089 0.73481 0.75802 0.95496 0.94804 0.93248 0.89432 0.89381 0.91619 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.83 113.37 1.11 1.29 16 2 O -0.33 -6.61 9.75 -93.33 -0.91 -7.52 16 3 C 0.04 0.98 6.72 22.70 0.15 1.13 16 4 C -0.13 -2.21 9.14 22.53 0.21 -2.00 16 5 C -0.15 -2.59 10.10 22.36 0.23 -2.37 16 6 C 0.07 1.82 11.17 84.63 0.95 2.77 16 7 N -0.49 -17.86 7.87 -192.59 -1.52 -19.37 16 8 C 0.33 10.84 7.45 132.99 0.99 11.83 16 9 N -0.66 -22.56 5.40 -321.76 -1.74 -24.30 16 10 C 0.69 29.45 8.53 179.05 1.53 30.97 16 11 O -0.59 -30.11 14.59 -3.99 -0.06 -30.17 16 12 N -0.71 -29.55 5.48 -478.53 -2.62 -32.17 16 13 C 0.20 9.70 5.50 86.38 0.48 10.18 16 14 C 0.00 0.24 1.38 -52.93 -0.07 0.16 16 15 C -0.50 -26.14 8.63 25.60 0.22 -25.92 16 16 H 0.06 3.21 7.82 -2.91 -0.02 3.18 16 17 C 0.02 1.32 5.39 84.66 0.46 1.77 16 18 N -0.91 -52.42 12.91 21.45 0.28 -52.14 16 19 Si 0.95 42.87 29.55 68.60 2.03 44.89 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 23 C -0.18 -7.09 9.96 30.62 0.30 -6.79 16 24 C -0.16 -7.29 9.42 30.62 0.29 -7.00 16 25 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.45 7.70 -2.38 -0.02 0.44 16 27 H 0.07 0.48 7.70 -2.38 -0.02 0.46 16 28 H 0.18 1.44 6.44 -2.91 -0.02 1.42 16 29 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.43 11.86 8.06 -92.71 -0.75 11.11 16 32 H 0.41 14.86 8.38 -92.71 -0.78 14.08 16 33 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.03 1.63 8.09 -2.38 -0.02 1.61 16 35 H 0.26 14.42 8.32 -92.71 -0.77 13.65 16 36 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 38 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -75.38 337.55 1.86 -73.52 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.44 Total: 31.24 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.83 Total: 16.02 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -5.60 Total: -127.98 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.97 Total: -37.69 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -75.38 1.86 -73.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563833708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.521 kcal (2) G-P(sol) polarization free energy of solvation -75.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds