Wall clock time and date at job start Tue Mar 31 2020 07:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 119.99991 * 2 1 4 4 H 1.48500 * 109.47180 * 275.39006 * 3 2 1 5 5 H 1.48499 * 109.47063 * 35.38757 * 3 2 1 6 6 H 1.48505 * 109.47475 * 155.38460 * 3 2 1 7 7 C 1.38953 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00068 * 338.52621 * 7 2 1 9 9 N 1.37096 * 120.00048 * 158.52118 * 7 2 1 10 10 C 1.34779 * 119.99883 * 317.55613 * 9 7 2 11 11 O 1.21286 * 120.00380 * 3.84787 * 10 9 7 12 12 C 1.50707 * 119.99478 * 183.85266 * 10 9 7 13 13 H 1.08995 * 107.88350 * 332.05881 * 12 10 9 14 14 C 1.51019 * 108.05130 * 88.65327 * 12 10 9 15 15 C 1.54147 * 110.79738 * 193.94439 * 14 12 10 16 16 C 1.51811 * 106.71095 * 280.83651 * 15 14 12 17 17 N 1.30306 * 127.91722 * 245.52072 * 16 15 14 18 18 N 1.29266 * 107.46022 * 180.25333 * 17 16 15 19 19 N 1.29143 * 109.43322 * 0.02562 * 18 17 16 20 20 N 1.28394 * 108.35787 * 0.02562 * 19 18 17 21 21 C 1.47660 * 127.74542 * 179.97438 * 20 19 18 22 22 C 1.50882 * 108.04920 * 215.46222 * 12 10 9 23 23 C 1.46501 * 119.99994 * 137.55024 * 9 7 2 24 24 C 1.53001 * 117.49879 * 3.16571 * 23 9 7 25 25 C 1.53000 * 60.00024 * 252.51536 * 24 23 9 26 26 H 0.96994 * 120.00184 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.19226 * 314.23116 * 14 12 10 28 28 H 1.08994 * 109.19625 * 73.56285 * 14 12 10 29 29 H 1.09000 * 110.12516 * 161.52334 * 15 14 12 30 30 H 1.09002 * 110.02327 * 40.09273 * 15 14 12 31 31 H 1.08997 * 109.91680 * 233.65657 * 21 20 19 32 32 H 1.09005 * 109.91056 * 354.82123 * 21 20 19 33 33 H 1.08997 * 109.12687 * 45.29011 * 22 12 10 34 34 H 1.08991 * 109.13542 * 286.18017 * 22 12 10 35 35 H 1.08997 * 115.54959 * 148.87754 * 23 9 7 36 36 H 1.09005 * 117.49817 * 0.02562 * 24 23 9 37 37 H 1.09000 * 117.49632 * 145.01923 * 24 23 9 38 38 H 1.09006 * 117.49259 * 252.51191 * 25 24 23 39 39 H 1.08999 * 117.50218 * 107.49250 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3817 2.1122 -1.3939 5 1 1.5071 2.6171 0.8108 6 1 3.5979 1.4101 0.5832 7 6 2.0089 -1.2033 0.0005 8 1 1.5251 -2.1061 0.3433 9 7 3.3084 -1.2447 -0.4342 10 6 3.6715 -0.5633 -1.5389 11 8 2.8659 0.1420 -2.1085 12 6 5.0786 -0.6780 -2.0663 13 1 5.7342 -0.9020 -1.2250 14 6 5.1266 -1.8469 -3.0214 15 6 6.5842 -2.2412 -3.3310 16 6 7.0955 -1.2493 -4.3603 17 7 7.4451 -1.4836 -5.5935 18 7 7.8230 -0.3604 -6.1097 19 7 7.7186 0.5754 -5.2258 20 7 7.2739 0.0569 -4.1386 21 6 6.9961 0.7397 -2.8591 22 6 5.4787 0.6647 -2.6264 23 6 4.3025 -2.0296 0.3021 24 6 3.8135 -2.8397 1.5044 25 6 4.6493 -1.5768 1.7219 26 1 -0.4850 0.8400 -0.0004 27 1 4.6131 -2.6973 -2.5729 28 1 4.6236 -1.5729 -3.9487 29 1 6.6211 -3.2517 -3.7378 30 1 7.1875 -2.1815 -2.4251 31 1 7.5226 0.2368 -2.0480 32 1 7.3114 1.7814 -2.9182 33 1 5.1861 1.4459 -1.9249 34 1 4.9632 0.8249 -3.5732 35 1 5.1045 -2.4563 -0.3001 36 1 2.7520 -2.7891 1.7473 37 1 4.2937 -3.7999 1.6932 38 1 5.6795 -1.7061 2.0538 39 1 4.1379 -0.6951 2.1081 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566322427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:40 Heat of formation + Delta-G solvation = 125.934752 kcal Electronic energy + Delta-G solvation = -24400.386792 eV Core-core repulsion = 20961.444180 eV Total energy + Delta-G solvation = -3438.942612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.32963 -39.90121 -37.44526 -36.40494 -34.93715 -33.12852 -32.52059 -31.61790 -31.24860 -27.64556 -25.24591 -24.84172 -23.61156 -22.28630 -21.79027 -21.17223 -21.02319 -19.14368 -17.99555 -17.33239 -16.76769 -16.39911 -15.63394 -15.35331 -14.85300 -14.60703 -14.17277 -13.97635 -13.52216 -13.45926 -13.26881 -12.93638 -12.71740 -12.41530 -12.16021 -12.00970 -11.88367 -11.53459 -11.33024 -11.26747 -11.08218 -10.94639 -10.83265 -10.71822 -10.42750 -10.19573 -10.15145 -9.98869 -9.78714 -8.67080 -8.60082 -7.63558 -6.32111 -4.09335 1.28537 1.94790 2.23296 3.12951 3.30426 3.51194 3.57603 3.80722 3.96218 4.12960 4.33266 4.38271 4.45843 4.52566 4.75305 4.81417 4.90018 5.01891 5.07464 5.09915 5.24904 5.33650 5.38990 5.42386 5.50152 5.57298 5.64592 5.72266 5.78512 5.80410 6.02389 6.06753 6.12153 6.16412 6.23759 6.52666 6.72549 7.71008 7.83714 8.60874 8.62846 8.75319 9.29294 9.64481 10.72745 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.005706 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.014687 B = 4905.624395 C = 5478.223788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.095 3.905 3 Si 0.908 3.092 4 H -0.255 1.255 5 H -0.308 1.308 6 H -0.279 1.279 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.431 5.431 10 C 0.454 3.546 11 O -0.539 6.539 12 C -0.111 4.111 13 H 0.087 0.913 14 C -0.107 4.107 15 C -0.036 4.036 16 C 0.186 3.814 17 N -0.305 5.305 18 N -0.089 5.089 19 N -0.097 5.097 20 N -0.300 5.300 21 C 0.116 3.884 22 C -0.121 4.121 23 C 0.058 3.942 24 C -0.171 4.171 25 C -0.199 4.199 26 H 0.273 0.727 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.886 -3.060 1.396 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.115 4.115 3 Si 0.738 3.262 4 H -0.181 1.181 5 H -0.238 1.238 6 H -0.205 1.205 7 C -0.480 4.480 8 H 0.114 0.886 9 N -0.151 5.151 10 C 0.243 3.757 11 O -0.421 6.421 12 C -0.133 4.133 13 H 0.105 0.895 14 C -0.146 4.146 15 C -0.076 4.076 16 C -0.092 4.092 17 N -0.154 5.154 18 N -0.082 5.082 19 N -0.082 5.082 20 N -0.103 5.103 21 C -0.005 4.005 22 C -0.160 4.160 23 C -0.047 4.047 24 C -0.209 4.209 25 C -0.238 4.238 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.754 -2.222 -0.184 14.921 hybrid contribution 0.009 0.789 1.112 1.363 sum 14.763 -1.433 0.929 14.861 Atomic orbital electron populations 1.69752 1.06917 1.28317 1.44387 1.25308 0.94851 0.99381 0.91937 0.86428 0.79197 0.82445 0.78100 1.18073 1.23790 1.20468 1.18738 0.84726 0.96296 1.48244 0.88575 1.43145 1.07951 1.43247 1.20707 1.20078 0.88943 0.85031 0.81649 1.90564 1.52720 1.39965 1.58811 1.20654 0.98013 0.95109 0.99484 0.89524 1.21365 0.94426 0.98266 1.00577 1.20878 0.96314 0.96189 0.94224 1.26042 1.00980 0.86197 0.96001 1.74933 1.16300 1.19288 1.04890 1.78820 1.16260 0.92554 1.20610 1.78817 1.15624 1.23126 0.90667 1.48649 1.41442 1.07884 1.12312 1.22943 0.98578 0.99794 0.79160 1.21571 0.91517 0.98358 1.04576 1.21893 0.95172 1.00074 0.87579 1.23129 1.01989 0.94198 1.01553 1.23287 0.99740 0.99701 1.01098 0.91705 0.88735 0.90494 0.86913 0.88419 0.86977 0.86317 0.88314 0.89524 0.87013 0.87075 0.89366 0.89487 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.22 13.96 55.50 0.77 -24.45 16 2 C 0.10 2.64 4.79 -17.47 -0.08 2.56 16 3 Si 0.91 22.63 24.90 -169.99 -4.23 18.40 16 4 H -0.25 -6.66 6.28 56.52 0.36 -6.30 16 5 H -0.31 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.35 -9.16 8.64 -14.93 -0.13 -9.29 16 8 H 0.10 2.62 7.06 -52.49 -0.37 2.25 16 9 N -0.43 -9.05 2.49 -107.73 -0.27 -9.32 16 10 C 0.45 9.29 4.73 -10.98 -0.05 9.24 16 11 O -0.54 -13.63 11.67 5.55 0.06 -13.56 16 12 C -0.11 -1.53 1.33 -93.83 -0.12 -1.65 16 13 H 0.09 0.95 5.81 -51.93 -0.30 0.65 16 14 C -0.11 -1.30 4.71 -27.13 -0.13 -1.43 16 15 C -0.04 -0.33 6.03 -26.74 -0.16 -0.49 16 16 C 0.19 2.38 7.09 -156.74 -1.11 1.27 16 17 N -0.30 -4.77 12.37 32.63 0.40 -4.37 16 18 N -0.09 -1.49 13.45 60.31 0.81 -0.68 16 19 N -0.10 -1.47 13.36 60.35 0.81 -0.67 16 20 N -0.30 -3.80 3.36 -57.20 -0.19 -3.99 16 21 C 0.12 1.08 6.73 -3.05 -0.02 1.06 16 22 C -0.12 -1.59 4.45 -27.43 -0.12 -1.71 16 23 C 0.06 0.91 5.50 -67.93 -0.37 0.54 16 24 C -0.17 -2.54 9.80 -26.73 -0.26 -2.81 16 25 C -0.20 -2.90 10.36 -26.73 -0.28 -3.18 16 26 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 27 H 0.09 1.13 7.80 -51.93 -0.40 0.73 16 28 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.10 0.61 7.89 -51.93 -0.41 0.20 16 31 H 0.11 0.70 7.88 -51.93 -0.41 0.29 16 32 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.37 7.98 -51.93 -0.41 0.96 16 34 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 35 H 0.11 1.32 6.42 -51.93 -0.33 0.99 16 36 H 0.11 1.97 6.53 -51.93 -0.34 1.63 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -34.48 312.59 -5.07 -39.55 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.11 Total: 0.26 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.84 Total: -5.88 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 2.34 Total: -43.48 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.06 Total: -13.56 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.23 Total: 18.40 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.48 -5.07 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566322427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.485 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds