Wall clock time and date at job start Tue Mar 31 2020 07:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 119.99991 * 2 1 4 4 H 1.48500 * 109.47180 * 275.39006 * 3 2 1 5 5 H 1.48499 * 109.47063 * 35.38757 * 3 2 1 6 6 H 1.48505 * 109.47475 * 155.38460 * 3 2 1 7 7 C 1.38953 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00068 * 338.52621 * 7 2 1 9 9 N 1.37096 * 120.00048 * 158.52118 * 7 2 1 10 10 C 1.34779 * 119.99883 * 317.55613 * 9 7 2 11 11 O 1.21286 * 120.00380 * 3.84787 * 10 9 7 12 12 C 1.50707 * 119.99478 * 183.85266 * 10 9 7 13 13 H 1.08995 * 107.88350 * 332.05881 * 12 10 9 14 14 C 1.51019 * 108.05130 * 88.65327 * 12 10 9 15 15 C 1.54147 * 110.79738 * 193.94439 * 14 12 10 16 16 C 1.51811 * 106.71095 * 280.83651 * 15 14 12 17 17 N 1.30306 * 127.91722 * 245.52072 * 16 15 14 18 18 N 1.29266 * 107.46022 * 180.25333 * 17 16 15 19 19 N 1.29143 * 109.43322 * 0.02562 * 18 17 16 20 20 N 1.28394 * 108.35787 * 0.02562 * 19 18 17 21 21 C 1.47660 * 127.74542 * 179.97438 * 20 19 18 22 22 C 1.50882 * 108.04920 * 215.46222 * 12 10 9 23 23 C 1.46501 * 119.99994 * 137.55024 * 9 7 2 24 24 C 1.53001 * 117.49879 * 3.16571 * 23 9 7 25 25 C 1.53000 * 60.00024 * 252.51536 * 24 23 9 26 26 H 0.96994 * 120.00184 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.19226 * 314.23116 * 14 12 10 28 28 H 1.08994 * 109.19625 * 73.56285 * 14 12 10 29 29 H 1.09000 * 110.12516 * 161.52334 * 15 14 12 30 30 H 1.09002 * 110.02327 * 40.09273 * 15 14 12 31 31 H 1.08997 * 109.91680 * 233.65657 * 21 20 19 32 32 H 1.09005 * 109.91056 * 354.82123 * 21 20 19 33 33 H 1.08997 * 109.12687 * 45.29011 * 22 12 10 34 34 H 1.08991 * 109.13542 * 286.18017 * 22 12 10 35 35 H 1.08997 * 115.54959 * 148.87754 * 23 9 7 36 36 H 1.09005 * 117.49817 * 0.02562 * 24 23 9 37 37 H 1.09000 * 117.49632 * 145.01923 * 24 23 9 38 38 H 1.09006 * 117.49259 * 252.51191 * 25 24 23 39 39 H 1.08999 * 117.50218 * 107.49250 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3817 2.1122 -1.3939 5 1 1.5071 2.6171 0.8108 6 1 3.5979 1.4101 0.5832 7 6 2.0089 -1.2033 0.0005 8 1 1.5251 -2.1061 0.3433 9 7 3.3084 -1.2447 -0.4342 10 6 3.6715 -0.5633 -1.5389 11 8 2.8659 0.1420 -2.1085 12 6 5.0786 -0.6780 -2.0663 13 1 5.7342 -0.9020 -1.2250 14 6 5.1266 -1.8469 -3.0214 15 6 6.5842 -2.2412 -3.3310 16 6 7.0955 -1.2493 -4.3603 17 7 7.4451 -1.4836 -5.5935 18 7 7.8230 -0.3604 -6.1097 19 7 7.7186 0.5754 -5.2258 20 7 7.2739 0.0569 -4.1386 21 6 6.9961 0.7397 -2.8591 22 6 5.4787 0.6647 -2.6264 23 6 4.3025 -2.0296 0.3021 24 6 3.8135 -2.8397 1.5044 25 6 4.6493 -1.5768 1.7219 26 1 -0.4850 0.8400 -0.0004 27 1 4.6131 -2.6973 -2.5729 28 1 4.6236 -1.5729 -3.9487 29 1 6.6211 -3.2517 -3.7378 30 1 7.1875 -2.1815 -2.4251 31 1 7.5226 0.2368 -2.0480 32 1 7.3114 1.7814 -2.9182 33 1 5.1861 1.4459 -1.9249 34 1 4.9632 0.8249 -3.5732 35 1 5.1045 -2.4563 -0.3001 36 1 2.7520 -2.7891 1.7473 37 1 4.2937 -3.7999 1.6932 38 1 5.6795 -1.7061 2.0538 39 1 4.1379 -0.6951 2.1081 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566322427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:39 Heat of formation + Delta-G solvation = 100.368829 kcal Electronic energy + Delta-G solvation = -24401.495414 eV Core-core repulsion = 20961.444180 eV Total energy + Delta-G solvation = -3440.051234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.35465 -41.36871 -38.59255 -37.80256 -35.94472 -34.89871 -33.72395 -33.22357 -32.32375 -28.81657 -26.72980 -26.00335 -24.67294 -23.59992 -22.97049 -22.31500 -22.07256 -20.67887 -19.18805 -18.61255 -18.02196 -17.71282 -17.16509 -16.53500 -16.10916 -15.97641 -15.31824 -15.29071 -14.76889 -14.72118 -14.58849 -14.55480 -13.92603 -13.65711 -13.40379 -13.09066 -13.01577 -12.85085 -12.71564 -12.52151 -12.32142 -12.14245 -12.04651 -11.97086 -11.80187 -11.74005 -11.54080 -11.13853 -11.03407 -10.75371 -10.24456 -9.35177 -8.41921 -6.15389 0.28423 1.09128 1.16807 1.20955 1.30367 1.47959 1.92566 2.42131 2.56114 2.95898 2.99110 3.27819 3.29100 3.42398 3.46671 3.81904 3.92120 4.06450 4.10696 4.17178 4.22207 4.25283 4.34521 4.40004 4.43346 4.47414 4.72217 4.82155 4.85604 4.93070 4.98842 5.03571 5.11107 5.16398 5.32500 5.34059 5.54847 5.70039 5.90397 6.79355 6.92346 7.38272 7.54643 7.90671 8.66455 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.005706 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.014687 B = 4905.624395 C = 5478.223788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.040 3.960 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.316 1.316 6 H -0.246 1.246 7 C -0.339 4.339 8 H 0.068 0.932 9 N -0.448 5.448 10 C 0.449 3.551 11 O -0.596 6.596 12 C -0.097 4.097 13 H 0.137 0.863 14 C -0.103 4.103 15 C -0.022 4.022 16 C 0.190 3.810 17 N -0.333 5.333 18 N -0.121 5.121 19 N -0.110 5.110 20 N -0.296 5.296 21 C 0.119 3.881 22 C -0.120 4.120 23 C 0.044 3.956 24 C -0.176 4.176 25 C -0.185 4.185 26 H 0.269 0.731 27 H 0.102 0.898 28 H 0.041 0.959 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.168 0.832 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.641 -4.483 3.029 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.164 4.164 3 Si 0.788 3.212 4 H -0.207 1.207 5 H -0.247 1.247 6 H -0.169 1.169 7 C -0.466 4.466 8 H 0.085 0.915 9 N -0.168 5.168 10 C 0.240 3.760 11 O -0.481 6.481 12 C -0.118 4.118 13 H 0.155 0.845 14 C -0.142 4.142 15 C -0.062 4.062 16 C -0.088 4.088 17 N -0.183 5.183 18 N -0.115 5.115 19 N -0.096 5.096 20 N -0.100 5.100 21 C 0.001 3.999 22 C -0.159 4.159 23 C -0.060 4.060 24 C -0.214 4.214 25 C -0.223 4.223 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.060 0.940 29 H 0.151 0.849 30 H 0.167 0.833 31 H 0.183 0.817 32 H 0.156 0.844 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.185 0.815 36 H 0.086 0.914 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.559 -3.669 1.486 19.956 hybrid contribution -1.533 1.123 0.594 1.991 sum 18.026 -2.546 2.080 18.323 Atomic orbital electron populations 1.69868 1.08426 1.28460 1.48489 1.26018 0.95314 1.02372 0.92685 0.85590 0.79749 0.79371 0.76472 1.20724 1.24660 1.16921 1.18612 0.87383 0.94638 1.45954 0.91471 1.43355 1.07410 1.44200 1.21798 1.21361 0.91372 0.82718 0.80536 1.90536 1.55229 1.42219 1.60105 1.20732 0.93574 0.96175 1.01295 0.84531 1.21302 0.96771 0.97639 0.98511 1.21124 0.93965 0.95867 0.95245 1.26701 0.99566 0.86781 0.95797 1.74851 1.17465 1.19442 1.06505 1.78794 1.17764 0.93232 1.21698 1.78739 1.16161 1.23302 0.91429 1.48895 1.40536 1.08051 1.12475 1.23267 0.95774 1.01845 0.79038 1.21489 0.94264 0.97752 1.02428 1.22404 0.95157 1.00031 0.88390 1.23152 1.00233 0.96624 1.01341 1.23355 1.01842 0.97825 0.99291 0.92218 0.87968 0.94042 0.84944 0.83290 0.81742 0.84448 0.89139 0.93277 0.81477 0.91401 0.85205 0.84361 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.91 13.96 21.66 0.30 -56.61 16 2 C 0.04 2.30 4.79 84.93 0.41 2.71 16 3 Si 0.96 48.11 24.90 68.60 1.71 49.82 16 4 H -0.28 -15.06 6.28 99.48 0.63 -14.44 16 5 H -0.32 -15.98 7.11 99.48 0.71 -15.28 16 6 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.34 -17.93 8.64 84.04 0.73 -17.20 16 8 H 0.07 3.86 7.06 -2.91 -0.02 3.84 16 9 N -0.45 -18.06 2.49 -613.12 -1.52 -19.58 16 10 C 0.45 17.66 4.73 87.66 0.41 18.08 16 11 O -0.60 -30.73 11.67 -3.05 -0.04 -30.77 16 12 C -0.10 -2.25 1.33 -12.87 -0.02 -2.27 16 13 H 0.14 1.86 5.81 -2.39 -0.01 1.84 16 14 C -0.10 -2.09 4.71 30.34 0.14 -1.95 16 15 C -0.02 -0.27 6.03 30.59 0.18 -0.09 16 16 C 0.19 4.16 7.09 139.14 0.99 5.14 16 17 N -0.33 -9.81 12.37 -50.68 -0.63 -10.44 16 18 N -0.12 -3.96 13.45 36.91 0.50 -3.46 16 19 N -0.11 -3.16 13.36 37.02 0.49 -2.66 16 20 N -0.30 -6.47 3.36 -334.89 -1.13 -7.59 16 21 C 0.12 1.62 6.73 86.39 0.58 2.20 16 22 C -0.12 -2.79 4.45 30.14 0.13 -2.66 16 23 C 0.04 1.15 5.50 44.99 0.25 1.40 16 24 C -0.18 -4.62 9.80 30.59 0.30 -4.32 16 25 C -0.18 -4.44 10.36 30.59 0.32 -4.12 16 26 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 27 H 0.10 1.98 7.80 -2.39 -0.02 1.96 16 28 H 0.04 1.15 7.91 -2.39 -0.02 1.13 16 29 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.15 0.42 7.89 -2.39 -0.02 0.40 16 31 H 0.17 0.62 7.88 -2.39 -0.02 0.61 16 32 H 0.14 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.09 2.29 7.98 -2.39 -0.02 2.27 16 34 H 0.05 1.51 8.08 -2.39 -0.02 1.49 16 35 H 0.17 2.53 6.42 -2.39 -0.02 2.52 16 36 H 0.07 2.40 6.53 -2.38 -0.02 2.39 16 37 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -86.67 312.59 5.11 -81.57 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 0.99 Total: 2.80 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 4.42 Total: -3.07 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -1.98 Total: -100.34 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.04 Total: -30.77 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.71 Total: 49.82 kcal Total: -86.67 5.11 -81.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566322427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.936 kcal (2) G-P(sol) polarization free energy of solvation -86.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds