Wall clock time and date at job start Tue Mar 31 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99862 * 2 1 4 4 O 1.21589 * 119.99875 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99859 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47169 * 179.97438 * 6 5 3 8 8 C 1.50693 * 109.47130 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00369 * 0.02562 * 8 7 6 10 10 N 1.34786 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.39120 * 119.99860 * 184.37270 * 10 8 7 12 12 C 1.38647 * 120.28887 * 325.34680 * 11 10 8 13 13 C 1.38223 * 120.03661 * 180.26219 * 12 11 10 14 14 C 1.38864 * 120.61570 * 359.73851 * 13 12 11 15 15 C 1.36475 * 120.57506 * 0.02562 * 14 13 12 16 16 C 1.40732 * 119.94463 * 359.97438 * 15 14 13 17 17 C 1.41067 * 120.30097 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00158 * 154.83018 * 17 16 15 19 19 C 1.39960 * 120.00035 * 334.81866 * 17 16 15 20 20 N 1.30850 * 120.00172 * 334.82627 * 19 17 16 21 21 Si 1.86797 * 119.99964 * 154.81633 * 19 17 16 22 22 H 1.48493 * 109.47433 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47399 * 300.00688 * 21 19 17 24 24 H 1.48501 * 109.46727 * 60.00450 * 21 19 17 25 25 H 1.08999 * 109.47450 * 59.99852 * 1 2 3 26 26 H 1.09008 * 109.46767 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47408 * 299.99515 * 1 2 3 28 28 H 0.97000 * 120.00470 * 180.02562 * 2 1 3 29 29 H 0.97000 * 120.00359 * 0.02562 * 5 3 2 30 30 H 1.09001 * 109.47336 * 60.00529 * 6 5 3 31 31 H 1.09001 * 109.47388 * 299.99541 * 6 5 3 32 32 H 1.09004 * 109.46955 * 59.99960 * 7 6 5 33 33 H 1.08999 * 109.47357 * 300.00351 * 7 6 5 34 34 H 0.96996 * 119.99503 * 4.37567 * 10 8 7 35 35 H 1.08002 * 119.97971 * 359.97438 * 12 11 10 36 36 H 1.07995 * 119.69606 * 179.76870 * 13 12 11 37 37 H 1.07997 * 119.71651 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.02277 * 180.02562 * 15 14 13 39 39 H 0.97005 * 119.99936 * 354.62807 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2202 0.0005 5 7 3.4865 1.1672 -0.0005 6 6 4.2190 2.4360 -0.0011 7 6 5.7233 2.1565 -0.0010 8 6 6.4767 3.4616 -0.0022 9 8 5.8703 4.5119 -0.0026 10 7 7.8246 3.4617 -0.0018 11 6 8.5200 4.6631 0.0890 12 6 8.0169 5.8091 -0.5075 13 6 8.7149 6.9989 -0.4187 14 6 9.9192 7.0625 0.2696 15 6 10.4352 5.9509 0.8702 16 6 9.7444 4.7271 0.7948 17 6 10.2711 3.5733 1.4124 18 1 9.6112 2.7734 1.7142 19 6 11.6488 3.4651 1.6337 20 7 12.4868 4.1302 0.8803 21 14 12.2914 2.3712 3.0047 22 1 13.7750 2.4301 3.0309 23 1 11.7548 2.8425 4.3068 24 1 11.8552 0.9718 2.7670 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.9716 0.3272 -0.0013 30 1 3.9561 3.0078 0.8889 31 1 3.9554 3.0074 -0.8911 32 1 5.9866 1.5845 -0.8907 33 1 5.9867 1.5853 0.8892 34 1 8.3095 2.6240 -0.0648 35 1 7.0813 5.7711 -1.0458 36 1 8.3197 7.8873 -0.8886 37 1 10.4523 7.9998 0.3302 38 1 11.3724 6.0107 1.4036 39 1 12.1592 4.6363 0.1203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574889836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:07 Heat of formation + Delta-G solvation = -54.952608 kcal Electronic energy + Delta-G solvation = -22197.152002 eV Core-core repulsion = 18718.072774 eV Total energy + Delta-G solvation = -3479.079228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.14253 -39.59492 -37.52010 -35.41425 -34.63496 -33.99549 -33.81296 -31.10627 -29.37837 -28.50946 -26.77864 -25.15092 -23.68541 -21.49294 -21.13456 -20.85861 -19.55621 -18.72370 -18.01391 -16.87444 -16.46501 -16.08567 -15.89776 -15.23636 -14.76971 -14.56393 -14.34335 -14.17916 -13.92990 -13.64113 -13.29181 -12.82710 -12.68470 -12.49783 -12.25888 -12.01846 -11.87426 -11.59251 -11.37612 -11.05176 -10.72385 -10.47937 -10.40853 -10.33515 -9.73023 -9.49414 -9.38123 -9.09558 -9.00010 -8.89277 -7.64454 -7.42088 -6.99433 -4.51341 2.49030 2.53880 2.77355 3.08336 3.08407 3.19625 3.28057 3.29542 3.78317 3.93344 4.19191 4.51370 4.72257 4.91463 5.06146 5.19696 5.27206 5.42379 5.50580 5.52401 5.89484 5.98107 6.19020 6.19279 6.30330 6.33892 6.47111 6.69121 6.80234 6.92930 7.12034 7.35553 7.49583 7.68979 7.73415 7.81119 7.89280 7.99372 8.19672 8.30329 8.45011 8.64168 8.74248 8.92237 9.96617 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.003291 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.827860 B = 8506.550165 C = 9789.704273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.754 5.754 3 C 0.701 3.299 4 O -0.586 6.586 5 N -0.746 5.746 6 C 0.154 3.846 7 C -0.151 4.151 8 C 0.501 3.499 9 O -0.537 6.537 10 N -0.635 5.635 11 C 0.004 3.996 12 C -0.072 4.072 13 C -0.240 4.240 14 C -0.091 4.091 15 C -0.209 4.209 16 C 0.091 3.909 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.040 3.960 20 N -0.794 5.794 21 Si 1.064 2.936 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.276 1.276 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.397 0.603 29 H 0.395 0.605 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.402 0.598 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.554 -12.862 -1.385 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.410 5.410 3 C 0.400 3.600 4 O -0.463 6.463 5 N -0.402 5.402 6 C 0.030 3.970 7 C -0.192 4.192 8 C 0.287 3.713 9 O -0.415 6.415 10 N -0.277 5.277 11 C -0.089 4.089 12 C -0.092 4.092 13 C -0.260 4.260 14 C -0.110 4.110 15 C -0.228 4.228 16 C 0.087 3.913 17 C -0.554 4.554 18 H 0.092 0.908 19 C -0.182 4.182 20 N -0.417 5.417 21 Si 0.888 3.112 22 H -0.199 1.199 23 H -0.200 1.200 24 H -0.202 1.202 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.229 0.771 29 H 0.228 0.772 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.238 0.762 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.154 -11.595 -0.645 16.102 hybrid contribution -0.651 -0.727 -0.763 1.239 sum -11.805 -12.322 -1.408 17.122 Atomic orbital electron populations 1.21378 0.78221 1.01808 1.02344 1.44920 1.07753 1.07112 1.81212 1.15949 0.81777 0.84267 0.78004 1.90963 1.67810 1.30293 1.57259 1.45126 1.04713 1.09950 1.80414 1.20895 0.88155 0.83827 1.04115 1.21767 0.95166 0.97423 1.04814 1.20225 0.82750 0.90560 0.77778 1.90693 1.68021 1.33081 1.49664 1.42815 1.05146 1.09343 1.70407 1.17590 0.98408 0.85677 1.07248 1.20712 0.98489 0.92223 0.97786 1.20279 0.98406 0.97025 1.10312 1.20411 0.95513 0.97025 0.98084 1.20757 1.02815 0.92327 1.06938 1.17488 0.91128 0.93361 0.89347 1.20310 0.95063 1.03613 1.36435 0.90796 1.26970 0.93537 0.97749 0.99952 1.70467 1.39455 1.20303 1.11517 0.83641 0.76928 0.75478 0.75162 1.19857 1.20040 1.20203 0.92407 0.90764 0.92382 0.77063 0.77179 0.90537 0.90601 0.88588 0.88366 0.76236 0.87081 0.88963 0.89159 0.87362 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.76 10.70 59.85 0.64 1.40 16 2 N -0.75 -6.18 5.72 -72.07 -0.41 -6.60 16 3 C 0.70 8.81 8.57 -86.92 -0.74 8.07 16 4 O -0.59 -10.36 16.34 5.29 0.09 -10.28 16 5 N -0.75 -7.70 5.56 -65.22 -0.36 -8.06 16 6 C 0.15 2.05 4.96 -4.04 -0.02 2.03 16 7 C -0.15 -1.78 5.82 -27.88 -0.16 -1.95 16 8 C 0.50 8.97 7.67 -10.98 -0.08 8.89 16 9 O -0.54 -11.73 13.40 5.56 0.07 -11.66 16 10 N -0.63 -12.33 4.90 -9.48 -0.05 -12.38 16 11 C 0.00 0.10 6.33 -83.17 -0.53 -0.42 16 12 C -0.07 -1.72 8.69 -39.44 -0.34 -2.06 16 13 C -0.24 -5.58 10.04 -39.36 -0.39 -5.97 16 14 C -0.09 -2.14 9.97 -39.99 -0.40 -2.53 16 15 C -0.21 -5.23 7.87 -39.28 -0.31 -5.54 16 16 C 0.09 2.30 5.32 -106.65 -0.57 1.73 16 17 C -0.53 -12.83 8.35 -37.86 -0.32 -13.15 16 18 H 0.07 1.70 7.39 -52.49 -0.39 1.31 16 19 C 0.04 0.96 4.95 -17.33 -0.09 0.87 16 20 N -0.79 -20.02 12.32 55.55 0.68 -19.33 16 21 Si 1.06 20.26 30.00 -169.99 -5.10 15.16 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.28 -4.89 7.11 56.52 0.40 -4.48 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.40 1.85 8.84 -40.82 -0.36 1.49 16 29 H 0.39 2.57 8.49 -40.82 -0.35 2.22 16 30 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.40 6.86 7.95 -40.82 -0.32 6.54 16 35 H 0.11 2.63 6.20 -52.49 -0.33 2.30 16 36 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 37 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.11 2.78 6.45 -52.49 -0.34 2.44 16 39 H 0.30 7.80 6.62 -40.82 -0.27 7.53 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -33.29 333.76 -8.31 -41.60 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -4.95 Total: 15.15 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -3.31 Total: -8.64 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.14 Total: -46.37 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.16 Total: -21.93 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.10 Total: 15.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.29 -8.31 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574889836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.353 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds