Wall clock time and date at job start Tue Mar 31 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99862 * 2 1 4 4 O 1.21589 * 119.99875 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99859 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47169 * 179.97438 * 6 5 3 8 8 C 1.50693 * 109.47130 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00369 * 0.02562 * 8 7 6 10 10 N 1.34786 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.39120 * 119.99860 * 184.37270 * 10 8 7 12 12 C 1.38647 * 120.28887 * 325.34680 * 11 10 8 13 13 C 1.38223 * 120.03661 * 180.26219 * 12 11 10 14 14 C 1.38864 * 120.61570 * 359.73851 * 13 12 11 15 15 C 1.36475 * 120.57506 * 0.02562 * 14 13 12 16 16 C 1.40732 * 119.94463 * 359.97438 * 15 14 13 17 17 C 1.41067 * 120.30097 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00158 * 154.83018 * 17 16 15 19 19 C 1.39960 * 120.00035 * 334.81866 * 17 16 15 20 20 N 1.30850 * 120.00172 * 334.82627 * 19 17 16 21 21 Si 1.86797 * 119.99964 * 154.81633 * 19 17 16 22 22 H 1.48493 * 109.47433 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47399 * 300.00688 * 21 19 17 24 24 H 1.48501 * 109.46727 * 60.00450 * 21 19 17 25 25 H 1.08999 * 109.47450 * 59.99852 * 1 2 3 26 26 H 1.09008 * 109.46767 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47408 * 299.99515 * 1 2 3 28 28 H 0.97000 * 120.00470 * 180.02562 * 2 1 3 29 29 H 0.97000 * 120.00359 * 0.02562 * 5 3 2 30 30 H 1.09001 * 109.47336 * 60.00529 * 6 5 3 31 31 H 1.09001 * 109.47388 * 299.99541 * 6 5 3 32 32 H 1.09004 * 109.46955 * 59.99960 * 7 6 5 33 33 H 1.08999 * 109.47357 * 300.00351 * 7 6 5 34 34 H 0.96996 * 119.99503 * 4.37567 * 10 8 7 35 35 H 1.08002 * 119.97971 * 359.97438 * 12 11 10 36 36 H 1.07995 * 119.69606 * 179.76870 * 13 12 11 37 37 H 1.07997 * 119.71651 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.02277 * 180.02562 * 15 14 13 39 39 H 0.97005 * 119.99936 * 354.62807 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2202 0.0005 5 7 3.4865 1.1672 -0.0005 6 6 4.2190 2.4360 -0.0011 7 6 5.7233 2.1565 -0.0010 8 6 6.4767 3.4616 -0.0022 9 8 5.8703 4.5119 -0.0026 10 7 7.8246 3.4617 -0.0018 11 6 8.5200 4.6631 0.0890 12 6 8.0169 5.8091 -0.5075 13 6 8.7149 6.9989 -0.4187 14 6 9.9192 7.0625 0.2696 15 6 10.4352 5.9509 0.8702 16 6 9.7444 4.7271 0.7948 17 6 10.2711 3.5733 1.4124 18 1 9.6112 2.7734 1.7142 19 6 11.6488 3.4651 1.6337 20 7 12.4868 4.1302 0.8803 21 14 12.2914 2.3712 3.0047 22 1 13.7750 2.4301 3.0309 23 1 11.7548 2.8425 4.3068 24 1 11.8552 0.9718 2.7670 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.9716 0.3272 -0.0013 30 1 3.9561 3.0078 0.8889 31 1 3.9554 3.0074 -0.8911 32 1 5.9866 1.5845 -0.8907 33 1 5.9867 1.5853 0.8892 34 1 8.3095 2.6240 -0.0648 35 1 7.0813 5.7711 -1.0458 36 1 8.3197 7.8873 -0.8886 37 1 10.4523 7.9998 0.3302 38 1 11.3724 6.0107 1.4036 39 1 12.1592 4.6363 0.1203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574889836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:06 Heat of formation + Delta-G solvation = -80.044717 kcal Electronic energy + Delta-G solvation = -22198.240077 eV Core-core repulsion = 18718.072774 eV Total energy + Delta-G solvation = -3480.167303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38836 -40.89833 -39.24563 -36.43496 -35.76879 -35.57671 -35.50378 -32.24545 -31.23272 -30.16095 -27.62035 -26.92138 -24.90141 -23.19228 -22.54526 -22.08580 -21.05796 -19.89081 -19.63187 -18.16936 -17.99083 -17.16468 -17.06743 -16.59912 -16.38003 -15.84360 -15.63625 -15.41295 -15.23274 -14.98439 -14.63321 -14.33712 -14.09773 -13.88064 -13.81321 -13.28220 -13.02765 -12.92694 -12.68468 -12.47625 -12.43069 -12.14260 -11.94397 -11.52957 -11.47633 -11.07733 -10.81929 -10.59218 -10.46444 -9.81810 -9.54511 -9.28304 -8.80582 -6.39846 0.76872 0.92384 1.55782 1.60537 1.67755 1.77518 1.83426 2.10450 2.35856 2.48454 2.71821 3.38073 3.55140 3.65065 4.01980 4.07367 4.39755 4.40375 4.46709 4.51212 4.66356 4.70162 4.83544 4.88639 4.96758 4.99281 5.09536 5.31328 5.38227 5.48307 5.50301 5.69123 5.79503 5.93546 5.99706 6.03856 6.13946 6.35810 6.63559 6.88262 6.93669 7.10783 7.38120 7.56404 8.07314 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.003291 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.827860 B = 8506.550165 C = 9789.704273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.735 5.735 3 C 0.692 3.308 4 O -0.645 6.645 5 N -0.727 5.727 6 C 0.163 3.837 7 C -0.129 4.129 8 C 0.497 3.503 9 O -0.580 6.580 10 N -0.634 5.634 11 C 0.003 3.997 12 C -0.090 4.090 13 C -0.245 4.245 14 C -0.097 4.097 15 C -0.229 4.229 16 C 0.064 3.936 17 C -0.541 4.541 18 H 0.086 0.914 19 C 0.006 3.994 20 N -0.816 5.816 21 Si 1.115 2.885 22 H -0.278 1.278 23 H -0.271 1.271 24 H -0.248 1.248 25 H 0.044 0.956 26 H 0.117 0.883 27 H 0.043 0.957 28 H 0.418 0.582 29 H 0.418 0.582 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.415 0.585 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.920 -16.000 -0.971 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.391 5.391 3 C 0.391 3.609 4 O -0.526 6.526 5 N -0.385 5.385 6 C 0.038 3.962 7 C -0.169 4.169 8 C 0.286 3.714 9 O -0.460 6.460 10 N -0.277 5.277 11 C -0.092 4.092 12 C -0.110 4.110 13 C -0.264 4.264 14 C -0.116 4.116 15 C -0.249 4.249 16 C 0.059 3.941 17 C -0.568 4.568 18 H 0.104 0.896 19 C -0.211 4.211 20 N -0.439 5.439 21 Si 0.933 3.067 22 H -0.203 1.203 23 H -0.197 1.197 24 H -0.171 1.171 25 H 0.063 0.937 26 H 0.135 0.865 27 H 0.062 0.938 28 H 0.254 0.746 29 H 0.256 0.744 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.252 0.748 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.520 -14.840 -0.251 18.788 hybrid contribution -0.644 0.282 -0.943 1.176 sum -12.164 -14.558 -1.194 19.009 Atomic orbital electron populations 1.21545 0.77394 1.04195 1.01056 1.44793 1.08253 1.06638 1.79455 1.16280 0.82257 0.84594 0.77785 1.90928 1.69072 1.32761 1.59869 1.44762 1.04072 1.09960 1.79670 1.20556 0.89449 0.84686 1.01545 1.21677 0.92675 0.94245 1.08284 1.21262 0.82097 0.92268 0.75762 1.90679 1.68661 1.35480 1.51220 1.42840 1.05794 1.08482 1.70622 1.17762 0.98148 0.87269 1.06026 1.20885 0.98690 0.92946 0.98478 1.20596 0.98207 0.97735 1.09896 1.20650 0.95719 0.97598 0.97618 1.20798 1.02792 0.93313 1.08024 1.17829 0.92068 0.93948 0.90210 1.20535 0.95729 1.03783 1.36802 0.89615 1.28355 0.93760 0.97971 1.00999 1.70576 1.39739 1.21617 1.11927 0.83012 0.76071 0.75276 0.72363 1.20336 1.19654 1.17150 0.93716 0.86467 0.93777 0.74578 0.74427 0.93565 0.93142 0.84561 0.85056 0.74787 0.87266 0.86802 0.86812 0.88725 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.27 10.70 127.77 1.37 2.63 16 2 N -0.73 -10.29 5.72 -500.20 -2.86 -13.15 16 3 C 0.69 16.59 8.57 179.06 1.53 18.12 16 4 O -0.64 -23.21 16.34 -3.99 -0.07 -23.28 16 5 N -0.73 -13.36 5.56 -478.52 -2.66 -16.02 16 6 C 0.16 4.16 4.96 86.38 0.43 4.59 16 7 C -0.13 -2.66 5.82 29.85 0.17 -2.48 16 8 C 0.50 17.27 7.67 87.65 0.67 17.94 16 9 O -0.58 -25.63 13.40 -3.03 -0.04 -25.67 16 10 N -0.63 -23.95 4.90 -302.28 -1.48 -25.43 16 11 C 0.00 0.12 6.33 38.88 0.25 0.37 16 12 C -0.09 -4.33 8.69 22.36 0.19 -4.14 16 13 C -0.24 -11.37 10.04 22.42 0.22 -11.14 16 14 C -0.10 -4.57 9.97 22.01 0.22 -4.35 16 15 C -0.23 -11.76 7.87 22.47 0.18 -11.59 16 16 C 0.06 3.25 5.32 -21.18 -0.11 3.13 16 17 C -0.54 -26.15 8.35 23.38 0.20 -25.95 16 18 H 0.09 3.82 7.39 -2.91 -0.02 3.80 16 19 C 0.01 0.29 4.95 85.26 0.42 0.71 16 20 N -0.82 -41.60 12.32 21.83 0.27 -41.33 16 21 Si 1.12 39.46 30.00 68.60 2.06 41.52 16 22 H -0.28 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 24 H -0.25 -7.60 7.11 99.48 0.71 -6.89 16 25 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.42 2.35 8.84 -92.71 -0.82 1.53 16 29 H 0.42 3.74 8.49 -92.71 -0.79 2.96 16 30 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 31 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 32 H 0.14 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.41 13.34 7.95 -92.71 -0.74 12.60 16 35 H 0.11 5.26 6.20 -2.91 -0.02 5.25 16 36 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 38 H 0.09 5.02 6.45 -2.91 -0.02 5.00 16 39 H 0.29 15.26 6.62 -92.70 -0.61 14.64 16 Total: -1.00 -76.68 333.76 -0.12 -76.79 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -1.08 Total: 38.72 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 5.74 Total: -12.15 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -6.73 Total: -95.93 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.11 Total: -48.95 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.06 Total: 41.52 kcal Total: -76.68 -0.12 -76.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574889836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.253 kcal (2) G-P(sol) polarization free energy of solvation -76.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds