Wall clock time and date at job start Tue Mar 31 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50702 * 119.99588 * 2 1 4 4 N 1.46507 * 109.46955 * 125.00465 * 3 2 1 5 5 C 1.46493 * 120.00066 * 89.99397 * 4 3 2 6 6 C 1.50706 * 109.47128 * 90.00240 * 5 4 3 7 7 H 1.08000 * 119.99302 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72498 * 6 5 4 9 9 N 1.31515 * 119.99684 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99418 * 10 8 6 12 12 H 1.48493 * 109.47010 * 209.99942 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99638 * 10 8 6 14 14 C 1.38363 * 119.99526 * 269.99845 * 4 3 2 15 15 C 1.39928 * 119.99022 * 184.72527 * 14 4 3 16 16 N 1.31428 * 120.01476 * 179.71005 * 15 14 4 17 17 C 1.33326 * 120.00622 * 0.56181 * 16 15 14 18 18 C 1.47698 * 120.00193 * 179.73162 * 17 16 15 19 19 O 1.21485 * 119.99557 * 179.97438 * 18 17 16 20 20 O 1.34729 * 120.00434 * 359.97438 * 18 17 16 21 21 C 1.45196 * 116.99976 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.46993 * 179.97438 * 21 20 18 23 23 C 1.39451 * 119.98900 * 359.71244 * 17 16 15 24 24 N 1.32039 * 119.98739 * 359.97438 * 23 17 16 25 25 H 1.07992 * 119.99699 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99950 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00277 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47392 * 5.00084 * 3 2 1 29 29 H 1.09002 * 109.46848 * 244.99821 * 3 2 1 30 30 H 1.09001 * 109.47786 * 330.00513 * 5 4 3 31 31 H 1.08998 * 109.47558 * 210.00376 * 5 4 3 32 32 H 0.97004 * 120.00247 * 180.02562 * 9 8 6 33 33 H 1.07995 * 119.99319 * 0.02562 * 15 14 4 34 34 H 1.09002 * 109.47394 * 299.99706 * 21 20 18 35 35 H 1.08997 * 109.47498 * 60.00496 * 21 20 18 36 36 H 1.08997 * 109.47599 * 300.00207 * 22 21 20 37 37 H 1.09006 * 109.46913 * 60.00411 * 22 21 20 38 38 H 1.08997 * 109.46984 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.01099 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9939 1.3319 1.1314 5 6 4.3590 0.8257 0.9694 6 6 5.2616 1.9481 0.5259 7 1 4.8585 2.9392 0.3790 8 6 6.6029 1.7108 0.3126 9 7 7.0948 0.5050 0.4967 10 14 7.7219 3.1021 -0.2365 11 1 8.2864 3.7834 0.9562 12 1 8.8271 2.5521 -1.0618 13 1 6.9416 4.0769 -1.0403 14 6 2.5831 1.8353 2.3530 15 6 3.4985 1.9527 3.4047 16 7 3.1102 2.4361 4.5635 17 6 1.8411 2.8044 4.7408 18 6 1.4034 3.3421 6.0449 19 8 0.2472 3.6781 6.2062 20 8 2.2864 3.4600 7.0557 21 6 1.7863 3.9967 8.3087 22 6 2.9247 4.0546 9.3293 23 6 0.9272 2.6822 3.6946 24 7 1.3192 2.2023 2.5286 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 4.3667 0.0352 0.2190 31 1 4.7142 0.4278 1.9199 32 1 8.0385 0.3381 0.3470 33 1 4.5256 1.6507 3.2626 34 1 1.3946 5.0004 8.1435 35 1 0.9915 3.3543 8.6877 36 1 3.3161 3.0508 9.4945 37 1 3.7198 4.6969 8.9506 38 1 2.5491 4.4571 10.2700 39 1 -0.1010 2.9800 3.8379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575810564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:53 Heat of formation + Delta-G solvation = -11.506892 kcal Electronic energy + Delta-G solvation = -22603.705274 eV Core-core repulsion = 19126.509994 eV Total energy + Delta-G solvation = -3477.195280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84503 -39.77825 -37.12404 -36.36902 -33.83655 -33.65074 -32.56691 -31.71789 -30.19731 -27.85917 -26.22919 -24.56938 -23.54394 -23.20146 -21.95443 -20.82541 -19.52229 -18.11038 -17.30618 -16.86148 -16.56035 -16.52903 -16.44260 -14.94316 -14.76397 -14.58479 -14.43421 -14.07570 -13.71647 -13.69048 -13.26025 -12.90464 -12.70880 -12.56285 -11.95472 -11.78872 -11.59223 -11.52657 -11.34608 -11.12898 -10.92862 -10.82008 -10.78994 -10.54492 -10.46865 -10.29629 -10.10205 -9.38160 -9.25798 -8.73956 -8.63397 -7.23213 -6.29489 -4.40362 0.93757 1.60942 2.43245 2.75318 2.76525 3.18147 3.25631 3.27720 3.52182 4.21327 4.26434 4.50446 4.68581 4.88436 4.90216 4.94063 5.03472 5.18242 5.20503 5.21447 5.40515 5.50319 5.65979 5.71832 5.76536 5.92244 5.98973 6.04114 6.18100 6.41680 6.51078 6.76011 6.82993 6.93684 6.98950 7.26321 7.62012 7.68266 7.84706 7.86996 8.04881 8.30720 8.67304 9.28602 10.75461 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.004660 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.496034 B = 6007.189960 C = 7833.488270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.146 3.854 4 N -0.548 5.548 5 C 0.241 3.759 6 C -0.546 4.546 7 H 0.063 0.937 8 C 0.069 3.931 9 N -0.888 5.888 10 Si 0.900 3.100 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.396 3.604 15 C 0.011 3.989 16 N -0.361 5.361 17 C -0.086 4.086 18 C 0.543 3.457 19 O -0.522 6.522 20 O -0.337 6.337 21 C 0.060 3.940 22 C -0.152 4.152 23 C 0.181 3.819 24 N -0.525 5.525 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.268 0.732 33 H 0.185 0.815 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.475 2.263 7.310 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.182 4.182 3 C 0.023 3.977 4 N -0.251 5.251 5 C 0.123 3.877 6 C -0.584 4.584 7 H 0.082 0.918 8 C -0.135 4.135 9 N -0.525 5.525 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.152 3.848 15 C -0.166 4.166 16 N -0.076 5.076 17 C -0.222 4.222 18 C 0.388 3.612 19 O -0.412 6.412 20 O -0.252 6.252 21 C -0.014 4.014 22 C -0.209 4.209 23 C 0.017 3.983 24 N -0.248 5.248 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.202 0.798 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.565 2.195 7.197 12.170 hybrid contribution 0.625 0.668 -0.262 0.951 sum -8.940 2.864 6.936 11.672 Atomic orbital electron populations 1.23747 0.95761 1.01445 1.00878 1.23351 0.96174 0.99109 0.99528 1.20590 0.92109 0.95320 0.89675 1.47380 1.14171 1.57828 1.05690 1.19674 0.74048 0.95200 0.98819 1.21431 0.93151 0.95961 1.47853 0.91840 1.24924 0.97896 0.95942 0.94754 1.69909 1.14559 1.20251 1.47828 0.86452 0.80110 0.81827 0.78894 1.20241 1.20970 1.19773 1.19844 0.89529 0.87305 0.88137 1.23566 1.01909 1.03349 0.87790 1.68200 1.14609 1.02719 1.22027 1.20259 0.92957 1.15051 0.93925 1.20510 0.82966 0.74187 0.83502 1.90800 1.19194 1.48170 1.83010 1.86710 1.41518 1.75706 1.21312 1.23009 0.97569 0.98967 0.81865 1.21788 0.98382 1.03564 0.97146 1.23261 0.99954 0.88719 0.86363 1.68237 1.15081 1.18472 1.23007 0.89021 0.88435 0.87546 0.89950 0.89121 0.93533 0.93892 0.92236 0.79774 0.91407 0.91426 0.91396 0.91368 0.90510 0.81181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 14.32 29.01 0.42 -1.92 16 2 C -0.16 -2.40 9.85 -36.03 -0.35 -2.75 16 3 C 0.15 2.41 5.83 -5.19 -0.03 2.38 16 4 N -0.55 -10.53 2.54 -176.42 -0.45 -10.97 16 5 C 0.24 5.31 4.79 -5.19 -0.02 5.29 16 6 C -0.55 -13.38 9.34 -34.44 -0.32 -13.70 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -23.41 13.29 55.43 0.74 -22.68 16 10 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 14 C 0.40 7.61 7.36 -155.02 -1.14 6.47 16 15 C 0.01 0.22 10.34 -17.09 -0.18 0.05 16 16 N -0.36 -6.98 10.26 -9.46 -0.10 -7.07 16 17 C -0.09 -1.53 6.74 -82.90 -0.56 -2.09 16 18 C 0.54 9.24 7.94 34.59 0.27 9.51 16 19 O -0.52 -9.08 16.12 -19.25 -0.31 -9.39 16 20 O -0.34 -5.35 10.05 -40.57 -0.41 -5.75 16 21 C 0.06 0.70 6.20 37.16 0.23 0.93 16 22 C -0.15 -1.37 10.29 37.16 0.38 -0.99 16 23 C 0.18 3.01 10.76 -17.01 -0.18 2.83 16 24 N -0.52 -9.37 9.30 -11.94 -0.11 -9.48 16 25 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 26 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.08 1.32 7.10 -51.93 -0.37 0.96 16 29 H 0.09 1.49 8.07 -51.93 -0.42 1.08 16 30 H 0.05 1.07 8.07 -51.93 -0.42 0.65 16 31 H 0.04 0.99 6.38 -51.93 -0.33 0.66 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.19 3.75 6.22 -52.49 -0.33 3.42 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.17 2.41 7.63 -52.48 -0.40 2.01 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -27.49 345.89 -7.21 -34.70 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.18 Total: 2.85 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -1.59 Total: 7.65 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.08 Total: -50.20 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.72 Total: -15.14 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.49 -7.21 -34.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575810564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.193 kcal (2) G-P(sol) polarization free energy of solvation -27.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds