Wall clock time and date at job start Tue Mar 31 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50702 * 119.99588 * 2 1 4 4 N 1.46507 * 109.46955 * 125.00465 * 3 2 1 5 5 C 1.46493 * 120.00066 * 89.99397 * 4 3 2 6 6 C 1.50706 * 109.47128 * 90.00240 * 5 4 3 7 7 H 1.08000 * 119.99302 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72498 * 6 5 4 9 9 N 1.31515 * 119.99684 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99418 * 10 8 6 12 12 H 1.48493 * 109.47010 * 209.99942 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99638 * 10 8 6 14 14 C 1.38363 * 119.99526 * 269.99845 * 4 3 2 15 15 C 1.39928 * 119.99022 * 184.72527 * 14 4 3 16 16 N 1.31428 * 120.01476 * 179.71005 * 15 14 4 17 17 C 1.33326 * 120.00622 * 0.56181 * 16 15 14 18 18 C 1.47698 * 120.00193 * 179.73162 * 17 16 15 19 19 O 1.21485 * 119.99557 * 179.97438 * 18 17 16 20 20 O 1.34729 * 120.00434 * 359.97438 * 18 17 16 21 21 C 1.45196 * 116.99976 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.46993 * 179.97438 * 21 20 18 23 23 C 1.39451 * 119.98900 * 359.71244 * 17 16 15 24 24 N 1.32039 * 119.98739 * 359.97438 * 23 17 16 25 25 H 1.07992 * 119.99699 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99950 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00277 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47392 * 5.00084 * 3 2 1 29 29 H 1.09002 * 109.46848 * 244.99821 * 3 2 1 30 30 H 1.09001 * 109.47786 * 330.00513 * 5 4 3 31 31 H 1.08998 * 109.47558 * 210.00376 * 5 4 3 32 32 H 0.97004 * 120.00247 * 180.02562 * 9 8 6 33 33 H 1.07995 * 119.99319 * 0.02562 * 15 14 4 34 34 H 1.09002 * 109.47394 * 299.99706 * 21 20 18 35 35 H 1.08997 * 109.47498 * 60.00496 * 21 20 18 36 36 H 1.08997 * 109.47599 * 300.00207 * 22 21 20 37 37 H 1.09006 * 109.46913 * 60.00411 * 22 21 20 38 38 H 1.08997 * 109.46984 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.01099 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9939 1.3319 1.1314 5 6 4.3590 0.8257 0.9694 6 6 5.2616 1.9481 0.5259 7 1 4.8585 2.9392 0.3790 8 6 6.6029 1.7108 0.3126 9 7 7.0948 0.5050 0.4967 10 14 7.7219 3.1021 -0.2365 11 1 8.2864 3.7834 0.9562 12 1 8.8271 2.5521 -1.0618 13 1 6.9416 4.0769 -1.0403 14 6 2.5831 1.8353 2.3530 15 6 3.4985 1.9527 3.4047 16 7 3.1102 2.4361 4.5635 17 6 1.8411 2.8044 4.7408 18 6 1.4034 3.3421 6.0449 19 8 0.2472 3.6781 6.2062 20 8 2.2864 3.4600 7.0557 21 6 1.7863 3.9967 8.3087 22 6 2.9247 4.0546 9.3293 23 6 0.9272 2.6822 3.6946 24 7 1.3192 2.2023 2.5286 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 4.3667 0.0352 0.2190 31 1 4.7142 0.4278 1.9199 32 1 8.0385 0.3381 0.3470 33 1 4.5256 1.6507 3.2626 34 1 1.3946 5.0004 8.1435 35 1 0.9915 3.3543 8.6877 36 1 3.3161 3.0508 9.4945 37 1 3.7198 4.6969 8.9506 38 1 2.5491 4.4571 10.2700 39 1 -0.1010 2.9800 3.8379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575810564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:53 Heat of formation + Delta-G solvation = -25.381103 kcal Electronic energy + Delta-G solvation = -22604.306905 eV Core-core repulsion = 19126.509994 eV Total energy + Delta-G solvation = -3477.796911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.26205 -41.08300 -38.56852 -37.62077 -35.42772 -35.01724 -34.21088 -32.66228 -31.59867 -29.54030 -27.59230 -26.11509 -24.99655 -24.44547 -23.25734 -22.17042 -20.72756 -19.45085 -18.77248 -18.61341 -18.12388 -17.80963 -17.61874 -16.61759 -16.18985 -15.97659 -15.79032 -15.37557 -15.08184 -14.91962 -14.56954 -14.22461 -14.08731 -13.58341 -13.43314 -13.13801 -12.96124 -12.85408 -12.65365 -12.58160 -12.47343 -12.40929 -12.13914 -12.06455 -11.86698 -11.76990 -11.49548 -10.98425 -10.65016 -10.41940 -10.08735 -8.78079 -8.19728 -6.39487 -0.47452 0.13999 1.26926 1.38199 1.41298 1.44718 1.52547 1.58864 2.07507 2.39793 2.78894 3.07077 3.13330 3.32981 3.43383 3.91255 4.01236 4.04452 4.10523 4.12654 4.23330 4.36897 4.48604 4.58161 4.79204 4.83515 4.85693 4.94413 5.04100 5.11097 5.13537 5.20954 5.39363 5.58187 5.72678 5.79293 5.84891 5.96441 6.22141 6.39225 6.61954 6.74584 6.88377 7.32532 8.81139 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.004660 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.496034 B = 6007.189960 C = 7833.488270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.186 4.186 3 C 0.148 3.852 4 N -0.553 5.553 5 C 0.258 3.742 6 C -0.549 4.549 7 H 0.055 0.945 8 C 0.026 3.974 9 N -0.917 5.917 10 Si 0.956 3.044 11 H -0.277 1.277 12 H -0.280 1.280 13 H -0.270 1.270 14 C 0.390 3.610 15 C -0.006 4.006 16 N -0.370 5.370 17 C -0.091 4.091 18 C 0.546 3.454 19 O -0.527 6.527 20 O -0.351 6.351 21 C 0.051 3.949 22 C -0.147 4.147 23 C 0.189 3.811 24 N -0.518 5.518 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.269 0.731 33 H 0.169 0.831 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.003 3.162 7.949 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.205 4.205 3 C 0.026 3.974 4 N -0.256 5.256 5 C 0.138 3.862 6 C -0.588 4.588 7 H 0.073 0.927 8 C -0.175 4.175 9 N -0.556 5.556 10 Si 0.781 3.219 11 H -0.203 1.203 12 H -0.205 1.205 13 H -0.195 1.195 14 C 0.146 3.854 15 C -0.182 4.182 16 N -0.086 5.086 17 C -0.228 4.228 18 C 0.391 3.609 19 O -0.417 6.417 20 O -0.267 6.267 21 C -0.023 4.023 22 C -0.204 4.204 23 C 0.025 3.975 24 N -0.241 5.241 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.186 0.814 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -11.099 3.096 7.831 13.932 hybrid contribution 0.973 0.429 -0.332 1.114 sum -10.126 3.525 7.499 13.085 Atomic orbital electron populations 1.23964 0.94963 1.02812 0.97523 1.23179 0.96828 0.97915 1.02575 1.20675 0.91703 0.96650 0.88397 1.47243 1.13617 1.58192 1.06585 1.19237 0.75394 0.94153 0.97440 1.21628 0.93732 0.96137 1.47273 0.92688 1.25592 0.99179 0.97761 0.94949 1.69993 1.14867 1.21738 1.48968 0.85585 0.78511 0.79403 0.78393 1.20270 1.20513 1.19479 1.19828 0.90032 0.87623 0.87917 1.23328 1.01583 1.04812 0.88488 1.68139 1.15701 1.02772 1.21950 1.20602 0.92593 1.14642 0.94991 1.20314 0.82966 0.74075 0.83531 1.90790 1.19255 1.48459 1.83162 1.86698 1.41830 1.75708 1.22439 1.23401 0.98956 0.99284 0.80622 1.21828 0.97459 1.03537 0.97535 1.23722 1.00945 0.87357 0.85433 1.68297 1.14090 1.18233 1.23492 0.86986 0.87580 0.88176 0.89335 0.89784 0.94710 0.95296 0.92156 0.81351 0.90715 0.90606 0.91706 0.91817 0.87491 0.78171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 14.32 67.77 0.97 -2.67 16 2 C -0.19 -5.33 9.85 25.64 0.25 -5.08 16 3 C 0.15 4.85 5.83 85.63 0.50 5.35 16 4 N -0.55 -21.55 2.54 -712.08 -1.81 -23.36 16 5 C 0.26 11.74 4.79 85.64 0.41 12.15 16 6 C -0.55 -27.49 9.34 25.60 0.24 -27.25 16 7 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 8 C 0.03 1.34 5.46 84.65 0.46 1.81 16 9 N -0.92 -49.22 13.29 21.45 0.28 -48.93 16 10 Si 0.96 41.10 29.54 68.60 2.03 43.13 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 14 C 0.39 14.99 7.36 133.36 0.98 15.97 16 15 C -0.01 -0.23 10.34 85.16 0.88 0.65 16 16 N -0.37 -14.37 10.26 -183.83 -1.89 -16.26 16 17 C -0.09 -3.16 6.74 41.71 0.28 -2.88 16 18 C 0.55 17.82 7.94 70.32 0.56 18.38 16 19 O -0.53 -17.23 16.12 19.88 0.32 -16.91 16 20 O -0.35 -10.75 10.05 -56.39 -0.57 -11.32 16 21 C 0.05 1.09 6.20 71.98 0.45 1.54 16 22 C -0.15 -2.35 10.29 71.98 0.74 -1.61 16 23 C 0.19 5.96 10.76 84.95 0.91 6.87 16 24 N -0.52 -17.81 9.30 -191.70 -1.78 -19.59 16 25 H 0.11 2.20 8.06 -2.91 -0.02 2.18 16 26 H 0.11 2.33 7.84 -2.91 -0.02 2.31 16 27 H 0.10 2.99 8.06 -2.91 -0.02 2.96 16 28 H 0.09 2.76 7.10 -2.39 -0.02 2.74 16 29 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 30 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 31 H 0.03 1.40 6.38 -2.39 -0.02 1.38 16 32 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 33 H 0.17 7.23 6.22 -2.91 -0.02 7.21 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.20 5.05 7.63 -2.91 -0.02 5.03 16 Total: -1.00 -58.05 345.89 5.27 -52.77 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 1.05 Total: 17.25 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 7.64 Total: 23.21 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -5.19 Total: -108.14 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.25 Total: -28.23 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -58.05 5.27 -52.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575810564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.393 kcal (2) G-P(sol) polarization free energy of solvation -58.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds