Wall clock time and date at job start Tue Mar 31 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00257 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 175.14052 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21590 * 120.00303 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99745 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47009 * 179.97438 * 15 14 12 17 17 C 1.35644 * 120.70093 * 259.72037 * 16 15 14 18 18 N 1.33785 * 120.41311 * 179.69586 * 17 16 15 19 19 C 1.30405 * 122.02628 * 0.61871 * 18 17 16 20 20 N 1.35660 * 121.41733 * 359.67465 * 19 18 17 21 21 H 0.97000 * 120.31019 * 179.97438 * 20 19 18 22 22 C 1.38027 * 119.37694 * 0.02562 * 20 19 18 23 23 N 1.31482 * 120.91994 * 179.97438 * 22 20 19 24 24 C 1.53000 * 117.49749 * 129.25937 * 9 7 2 25 25 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 26 26 H 0.96997 * 120.00397 * 4.99464 * 1 2 3 27 27 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 28 28 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 29 29 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 30 30 H 0.96991 * 120.00475 * 0.02562 * 14 12 11 31 31 H 1.08997 * 109.46910 * 300.00341 * 15 14 12 32 32 H 1.09000 * 109.46842 * 59.99932 * 15 14 12 33 33 H 1.08002 * 119.79408 * 0.02562 * 17 16 15 34 34 H 1.08003 * 119.29049 * 179.68664 * 19 18 17 35 35 H 0.97007 * 119.99507 * 0.02983 * 23 22 20 36 36 H 1.08997 * 117.50142 * 359.97438 * 24 9 7 37 37 H 1.09000 * 117.49511 * 145.02011 * 24 9 7 38 38 H 1.08996 * 117.49909 * 214.98045 * 25 9 7 39 39 H 1.09006 * 117.50020 * 359.97109 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0296 -3.9814 4.0153 14 7 3.2456 -4.0320 4.1593 15 6 3.1885 -4.5908 5.5123 16 6 4.5886 -4.7990 6.0293 17 6 5.1590 -6.0295 6.0076 18 7 6.4046 -6.2066 6.4625 19 6 7.1093 -5.2235 6.9497 20 7 6.6137 -3.9623 7.0142 21 1 7.1519 -3.2430 7.3801 22 6 5.3362 -3.7125 6.5552 23 7 4.8256 -2.5019 6.6037 24 6 1.5730 -3.5795 -0.9303 25 6 0.2452 -2.8210 -1.0000 26 1 -0.4850 0.8368 -0.0731 27 1 0.3751 -2.1632 2.0411 28 1 0.3015 -3.8512 1.4812 29 1 3.0164 -3.0733 1.8316 30 1 4.1039 -3.8565 3.7429 31 1 2.6573 -3.9010 6.1682 32 1 2.6643 -5.5462 5.4890 33 1 4.6061 -6.8705 5.6158 34 1 8.1090 -5.4174 7.3094 35 1 5.3484 -1.7691 6.9653 36 1 2.3245 -3.3491 -1.6853 37 1 1.5428 -4.6172 -0.5978 38 1 -0.6578 -3.3599 -0.7135 39 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576295943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:07 Heat of formation + Delta-G solvation = 58.344295 kcal Electronic energy + Delta-G solvation = -22474.341509 eV Core-core repulsion = 19032.467954 eV Total energy + Delta-G solvation = -3441.873554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28283 -39.18222 -36.73358 -35.68883 -35.32645 -33.16679 -32.78100 -31.88740 -30.36340 -27.09614 -25.80282 -24.90014 -24.13255 -22.59230 -21.09788 -20.13433 -19.29601 -18.77945 -18.43925 -17.66642 -17.06976 -16.26028 -15.63431 -15.16356 -15.03441 -14.75525 -14.53621 -14.14423 -13.87444 -13.41311 -13.30254 -12.63062 -12.58296 -12.25149 -12.06820 -11.63170 -11.47029 -10.94769 -10.88997 -10.86456 -10.48649 -10.45674 -10.16893 -9.85201 -9.60563 -9.37081 -8.96825 -8.65304 -8.41538 -8.16112 -8.02964 -7.84510 -6.01004 -4.10187 0.36444 1.64228 2.40872 3.13973 3.29321 3.37503 3.39083 3.63877 3.79833 3.97258 4.18970 4.40315 4.51767 4.64504 5.01817 5.10388 5.27276 5.44114 5.47294 5.61459 5.87450 5.96935 6.11658 6.16038 6.42852 6.56543 6.66025 6.68689 6.77872 6.93289 6.95838 7.19182 7.45409 7.50912 7.51695 7.56194 7.74336 7.87358 7.97783 8.41310 8.80570 8.90914 9.35873 9.56400 11.06289 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018464 B = 0.003632 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.134930 B = 7706.851174 C = 8485.786947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.498 4.498 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.183 3.817 11 N -0.722 5.722 12 C 0.700 3.300 13 O -0.606 6.606 14 N -0.743 5.743 15 C 0.211 3.789 16 C -0.186 4.186 17 C 0.142 3.858 18 N -0.553 5.553 19 C 0.376 3.624 20 N -0.667 5.667 21 H 0.414 0.586 22 C 0.415 3.585 23 N -0.728 5.728 24 C -0.211 4.211 25 C -0.142 4.142 26 H 0.261 0.739 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.395 0.605 30 H 0.391 0.609 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.166 0.834 34 H 0.200 0.800 35 H 0.331 0.669 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.067 -10.076 13.255 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.024 3.976 10 C 0.059 3.941 11 N -0.374 5.374 12 C 0.400 3.600 13 O -0.486 6.486 14 N -0.398 5.398 15 C 0.086 3.914 16 C -0.195 4.195 17 C 0.004 3.996 18 N -0.274 5.274 19 C 0.088 3.912 20 N -0.296 5.296 21 H 0.251 0.749 22 C 0.143 3.857 23 N -0.359 5.359 24 C -0.248 4.248 25 C -0.180 4.180 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.228 0.772 30 H 0.223 0.777 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.183 0.817 34 H 0.216 0.784 35 H 0.148 0.852 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.997 -10.576 13.357 22.049 hybrid contribution 2.197 2.472 0.205 3.313 sum 16.193 -8.104 13.562 22.623 Atomic orbital electron populations 1.69987 1.05838 1.26772 1.48442 1.24973 0.94804 0.98878 0.94389 0.86633 0.79943 0.83719 0.77936 1.20778 1.21195 1.19924 1.20332 0.92534 0.88652 1.52038 0.92364 1.19052 0.99261 0.93204 0.86048 1.20822 0.83371 0.97626 0.92239 1.45121 1.11075 1.66842 1.14381 1.15999 0.83835 0.78668 0.81474 1.90861 1.27900 1.60823 1.68979 1.44977 1.07446 1.70817 1.16605 1.19448 0.89859 0.99067 0.83039 1.20307 0.99183 0.91600 1.08377 1.22342 0.89671 0.96326 0.91242 1.68257 1.08830 1.30696 1.19644 1.25031 0.98346 0.79539 0.88298 1.44967 1.16426 1.11694 1.56514 0.74895 1.20169 0.80677 0.94003 0.90838 1.70767 1.36809 0.98461 1.29832 1.23005 1.00648 0.95655 1.05527 1.22459 0.90806 1.01306 1.03465 0.92930 0.91822 0.94463 0.77162 0.77679 0.90242 0.91165 0.81670 0.78401 0.85242 0.90537 0.91717 0.91802 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.84 12.65 55.43 0.70 -24.14 16 2 C 0.07 2.00 5.43 -17.82 -0.10 1.90 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.50 -13.16 8.59 -34.44 -0.30 -13.46 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.03 0.61 1.47 -155.66 -0.23 0.38 16 10 C 0.18 4.36 5.50 -4.04 -0.02 4.34 16 11 N -0.72 -14.98 5.48 -65.22 -0.36 -15.33 16 12 C 0.70 14.30 8.57 -86.91 -0.74 13.55 16 13 O -0.61 -14.64 16.34 5.29 0.09 -14.56 16 14 N -0.74 -11.66 5.55 -66.41 -0.37 -12.03 16 15 C 0.21 2.92 5.53 -5.19 -0.03 2.89 16 16 C -0.19 -2.01 5.30 -104.12 -0.55 -2.56 16 17 C 0.14 1.27 10.80 -17.63 -0.19 1.08 16 18 N -0.55 -4.37 10.36 -14.39 -0.15 -4.52 16 19 C 0.38 1.79 12.40 -89.89 -1.11 0.68 16 20 N -0.67 -3.72 5.43 -13.08 -0.07 -3.79 16 21 H 0.41 1.04 8.90 -40.82 -0.36 0.68 16 22 C 0.42 4.24 7.83 -155.64 -1.22 3.02 16 23 N -0.73 -9.09 13.45 31.38 0.42 -8.67 16 24 C -0.21 -4.53 9.96 -26.69 -0.27 -4.79 16 25 C -0.14 -3.35 9.14 -26.70 -0.24 -3.59 16 26 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 27 H 0.06 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 29 H 0.40 7.55 8.35 -40.82 -0.34 7.21 16 30 H 0.39 5.44 8.48 -40.82 -0.35 5.10 16 31 H 0.08 1.30 7.93 -51.93 -0.41 0.88 16 32 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 33 H 0.17 1.24 8.03 -52.49 -0.42 0.82 16 34 H 0.20 -0.01 8.06 -52.48 -0.42 -0.44 16 35 H 0.33 3.44 8.89 -40.82 -0.36 3.08 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -34.99 342.21 -9.77 -44.75 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.16 Total: 13.57 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -5.00 Total: 3.45 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: 0.18 Total: -68.49 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.09 Total: -14.56 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.99 -9.77 -44.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576295943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.098 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds