Wall clock time and date at job start Tue Mar 31 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00257 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 175.14052 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21590 * 120.00303 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99745 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47009 * 179.97438 * 15 14 12 17 17 C 1.35644 * 120.70093 * 259.72037 * 16 15 14 18 18 N 1.33785 * 120.41311 * 179.69586 * 17 16 15 19 19 C 1.30405 * 122.02628 * 0.61871 * 18 17 16 20 20 N 1.35660 * 121.41733 * 359.67465 * 19 18 17 21 21 H 0.97000 * 120.31019 * 179.97438 * 20 19 18 22 22 C 1.38027 * 119.37694 * 0.02562 * 20 19 18 23 23 N 1.31482 * 120.91994 * 179.97438 * 22 20 19 24 24 C 1.53000 * 117.49749 * 129.25937 * 9 7 2 25 25 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 26 26 H 0.96997 * 120.00397 * 4.99464 * 1 2 3 27 27 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 28 28 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 29 29 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 30 30 H 0.96991 * 120.00475 * 0.02562 * 14 12 11 31 31 H 1.08997 * 109.46910 * 300.00341 * 15 14 12 32 32 H 1.09000 * 109.46842 * 59.99932 * 15 14 12 33 33 H 1.08002 * 119.79408 * 0.02562 * 17 16 15 34 34 H 1.08003 * 119.29049 * 179.68664 * 19 18 17 35 35 H 0.97007 * 119.99507 * 0.02983 * 23 22 20 36 36 H 1.08997 * 117.50142 * 359.97438 * 24 9 7 37 37 H 1.09000 * 117.49511 * 145.02011 * 24 9 7 38 38 H 1.08996 * 117.49909 * 214.98045 * 25 9 7 39 39 H 1.09006 * 117.50020 * 359.97109 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0296 -3.9814 4.0153 14 7 3.2456 -4.0320 4.1593 15 6 3.1885 -4.5908 5.5123 16 6 4.5886 -4.7990 6.0293 17 6 5.1590 -6.0295 6.0076 18 7 6.4046 -6.2066 6.4625 19 6 7.1093 -5.2235 6.9497 20 7 6.6137 -3.9623 7.0142 21 1 7.1519 -3.2430 7.3801 22 6 5.3362 -3.7125 6.5552 23 7 4.8256 -2.5019 6.6037 24 6 1.5730 -3.5795 -0.9303 25 6 0.2452 -2.8210 -1.0000 26 1 -0.4850 0.8368 -0.0731 27 1 0.3751 -2.1632 2.0411 28 1 0.3015 -3.8512 1.4812 29 1 3.0164 -3.0733 1.8316 30 1 4.1039 -3.8565 3.7429 31 1 2.6573 -3.9010 6.1682 32 1 2.6643 -5.5462 5.4890 33 1 4.6061 -6.8705 5.6158 34 1 8.1090 -5.4174 7.3094 35 1 5.3484 -1.7691 6.9653 36 1 2.3245 -3.3491 -1.6853 37 1 1.5428 -4.6172 -0.5978 38 1 -0.6578 -3.3599 -0.7135 39 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576295943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:07 Heat of formation + Delta-G solvation = 32.266842 kcal Electronic energy + Delta-G solvation = -22475.472312 eV Core-core repulsion = 19032.467954 eV Total energy + Delta-G solvation = -3443.004358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.94084 -40.78816 -38.54749 -36.47297 -36.32544 -34.90727 -33.98699 -33.77883 -31.22117 -28.45275 -27.50731 -26.42760 -24.99780 -23.37453 -22.90414 -21.73174 -21.20995 -19.59669 -19.13994 -18.97639 -18.11063 -17.73719 -17.09388 -16.69711 -16.35132 -15.96630 -15.67485 -15.57205 -15.32953 -14.98548 -14.49660 -14.28590 -14.06528 -13.51488 -13.39437 -13.07548 -12.91535 -12.80973 -12.73357 -12.37779 -11.99480 -11.65176 -11.39993 -11.18669 -11.10194 -10.93288 -10.56943 -10.42309 -10.20680 -9.99833 -9.51507 -8.78620 -8.07913 -6.21668 -0.24502 0.96646 1.40479 1.43879 1.51463 1.87603 1.93707 2.32986 2.42508 2.70724 3.20209 3.35395 3.43289 3.51197 3.70279 3.82360 4.10466 4.27920 4.35176 4.59025 4.65557 4.69790 4.77280 4.80668 5.02231 5.03193 5.06439 5.15055 5.31481 5.31957 5.58195 5.60985 5.66706 5.76631 5.80920 6.16024 6.21126 6.38874 6.85512 6.94200 7.27764 7.30629 7.47506 7.74418 8.99247 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018464 B = 0.003632 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.134930 B = 7706.851174 C = 8485.786947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.002 3.998 10 C 0.200 3.800 11 N -0.717 5.717 12 C 0.697 3.303 13 O -0.647 6.647 14 N -0.722 5.722 15 C 0.217 3.783 16 C -0.226 4.226 17 C 0.174 3.826 18 N -0.580 5.580 19 C 0.400 3.600 20 N -0.651 5.651 21 H 0.431 0.569 22 C 0.419 3.581 23 N -0.780 5.780 24 C -0.175 4.175 25 C -0.152 4.152 26 H 0.258 0.742 27 H 0.019 0.981 28 H 0.036 0.964 29 H 0.404 0.596 30 H 0.402 0.598 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.177 0.823 34 H 0.256 0.744 35 H 0.336 0.664 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.636 -11.428 13.807 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.002 3.998 10 C 0.075 3.925 11 N -0.370 5.370 12 C 0.397 3.603 13 O -0.530 6.530 14 N -0.377 5.377 15 C 0.093 3.907 16 C -0.235 4.235 17 C 0.035 3.965 18 N -0.302 5.302 19 C 0.114 3.886 20 N -0.279 5.279 21 H 0.272 0.728 22 C 0.148 3.852 23 N -0.414 5.414 24 C -0.212 4.212 25 C -0.190 4.190 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.239 0.761 30 H 0.236 0.764 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.194 0.806 34 H 0.271 0.729 35 H 0.152 0.848 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.690 -11.926 13.936 25.483 hybrid contribution 1.241 2.765 0.128 3.033 sum 18.931 -9.162 14.064 25.301 Atomic orbital electron populations 1.70113 1.07205 1.27225 1.49947 1.25700 0.95496 1.02039 0.94473 0.85692 0.78764 0.79887 0.78120 1.19908 1.21902 1.19204 1.20653 0.92856 0.89637 1.50915 0.91996 1.19055 1.00332 0.93954 0.86492 1.20390 0.84211 0.95923 0.91935 1.44909 1.10483 1.67006 1.14618 1.16185 0.84432 0.78424 0.81292 1.90827 1.29870 1.62520 1.69813 1.44903 1.06419 1.69327 1.17020 1.19366 0.92200 0.98030 0.81154 1.19932 0.98315 0.92875 1.12400 1.22554 0.89942 0.95656 0.88396 1.68385 1.08403 1.31884 1.21533 1.26175 0.99418 0.78148 0.84843 1.44911 1.15006 1.12923 1.55098 0.72799 1.20024 0.82023 0.93216 0.89958 1.70777 1.38407 0.99668 1.32512 1.22987 0.98842 0.95922 1.03491 1.22384 0.92131 1.01774 1.02755 0.93255 0.96286 0.94554 0.76058 0.76369 0.93448 0.90668 0.80589 0.72851 0.84764 0.89638 0.89366 0.91237 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.82 12.65 21.45 0.27 -52.54 16 2 C 0.02 1.29 5.43 84.65 0.46 1.75 16 3 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.50 -26.53 8.59 25.60 0.22 -26.31 16 8 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.00 0.12 1.47 -52.93 -0.08 0.04 16 10 C 0.20 9.76 5.50 86.38 0.48 10.24 16 11 N -0.72 -29.94 5.48 -478.52 -2.62 -32.56 16 12 C 0.70 28.94 8.57 179.05 1.53 30.47 16 13 O -0.65 -32.34 16.34 -4.00 -0.07 -32.41 16 14 N -0.72 -22.72 5.55 -482.29 -2.68 -25.40 16 15 C 0.22 6.10 5.53 85.63 0.47 6.57 16 16 C -0.23 -4.64 5.30 -19.54 -0.10 -4.74 16 17 C 0.17 2.72 10.80 83.79 0.91 3.62 16 18 N -0.58 -7.05 10.36 -199.43 -2.07 -9.11 16 19 C 0.40 1.98 12.40 180.09 2.23 4.22 16 20 N -0.65 -5.17 5.43 -195.28 -1.06 -6.24 16 21 H 0.43 0.69 8.90 -92.71 -0.83 -0.14 16 22 C 0.42 8.04 7.83 134.38 1.05 9.09 16 23 N -0.78 -19.56 13.45 -54.62 -0.73 -20.29 16 24 C -0.18 -7.21 9.96 30.62 0.30 -6.90 16 25 C -0.15 -7.18 9.14 30.62 0.28 -6.90 16 26 H 0.26 14.50 8.32 -92.71 -0.77 13.73 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 1.75 8.09 -2.38 -0.02 1.73 16 29 H 0.40 15.21 8.35 -92.71 -0.77 14.43 16 30 H 0.40 10.90 8.48 -92.71 -0.79 10.11 16 31 H 0.05 1.63 7.93 -2.39 -0.02 1.62 16 32 H 0.08 1.99 8.01 -2.39 -0.02 1.97 16 33 H 0.18 2.24 8.03 -2.91 -0.02 2.22 16 34 H 0.26 -1.71 8.06 -2.91 -0.02 -1.73 16 35 H 0.34 7.00 8.89 -92.70 -0.82 6.18 16 36 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 37 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.07 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -78.73 342.21 -1.26 -79.99 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -2.08 Total: 31.74 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 7.76 Total: 21.14 kcal Atomic # 7 Polarization: -137.25 SS G_CDS: -8.89 Total: -146.15 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.07 Total: -32.41 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -78.73 -1.26 -79.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576295943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.255 kcal (2) G-P(sol) polarization free energy of solvation -78.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds