Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47187 * 2 1 4 4 C 1.34779 * 120.00117 * 180.02562 * 3 2 1 5 5 O 1.21582 * 119.99622 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99810 * 179.97438 * 4 3 2 7 7 C 1.39941 * 119.99857 * 184.51625 * 6 4 3 8 8 C 1.39008 * 120.02521 * 325.26442 * 7 6 4 9 9 C 1.38188 * 120.08980 * 179.97438 * 8 7 6 10 10 C 1.38131 * 120.15404 * 359.95245 * 9 8 7 11 11 C 1.39068 * 120.05240 * 359.79044 * 10 9 8 12 12 N 1.39523 * 120.04607 * 180.25259 * 11 10 9 13 13 C 1.34774 * 119.99946 * 34.77266 * 12 11 10 14 14 O 1.21749 * 120.00158 * 355.48548 * 13 12 11 15 15 C 1.46153 * 120.00055 * 175.48751 * 13 12 11 16 16 H 1.08005 * 120.00416 * 359.97438 * 15 13 12 17 17 C 1.40127 * 120.00317 * 179.97438 * 15 13 12 18 18 N 1.30642 * 119.99520 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00120 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47144 * 60.00262 * 19 17 15 21 21 H 1.48506 * 109.46907 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47214 * 299.99554 * 19 17 15 23 23 C 1.38662 * 120.02815 * 145.23477 * 7 6 4 24 24 C 1.50697 * 120.07241 * 359.97438 * 23 7 6 25 25 H 1.09003 * 109.46346 * 299.99583 * 1 2 3 26 26 H 1.08999 * 109.47060 * 59.99218 * 1 2 3 27 27 H 1.08993 * 109.46745 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46701 * 240.00018 * 2 1 3 29 29 H 1.08996 * 109.47515 * 120.00561 * 2 1 3 30 30 H 0.97001 * 119.99852 * 359.97438 * 3 2 1 31 31 H 0.96997 * 120.00538 * 4.52079 * 6 4 3 32 32 H 1.07993 * 119.95210 * 359.96776 * 8 7 6 33 33 H 1.08006 * 119.91901 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.96948 * 180.02562 * 10 9 8 35 35 H 0.97006 * 120.00176 * 214.76496 * 12 11 10 36 36 H 0.97003 * 119.99507 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.46968 * 90.00503 * 24 23 7 38 38 H 1.08997 * 109.46993 * 210.00082 * 24 23 7 39 39 H 1.09001 * 109.47599 * 330.00121 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1335 0.7033 -0.0015 6 7 3.7927 2.8982 -0.0010 7 6 5.1650 3.1551 -0.0970 8 6 6.0775 2.2932 0.5002 9 6 7.4329 2.5453 0.4058 10 6 7.8861 3.6537 -0.2827 11 6 6.9789 4.5172 -0.8871 12 7 7.4371 5.6338 -1.5870 13 6 8.5910 5.5678 -2.2802 14 8 9.2750 4.5619 -2.2295 15 6 9.0213 6.7037 -3.0930 16 1 8.4144 7.5960 -3.1384 17 6 10.2213 6.6353 -3.8133 18 7 10.9556 5.5563 -3.7580 19 14 10.7708 8.0870 -4.8526 20 1 10.9405 9.2804 -3.9856 21 1 12.0628 7.7642 -5.5098 22 1 9.7459 8.3698 -5.8892 23 6 5.6156 4.2694 -0.7884 24 6 4.6289 5.2051 -1.4380 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8935 -0.5139 0.8899 30 1 1.3880 2.1185 -0.0004 31 1 3.1649 3.6346 0.0652 32 1 5.7266 1.4253 1.0387 33 1 8.1394 1.8740 0.8712 34 1 8.9461 3.8477 -0.3550 35 1 6.9251 6.4577 -1.5748 36 1 11.7865 5.5091 -4.2564 37 1 4.3474 5.9848 -0.7302 38 1 5.0845 5.6601 -2.3174 39 1 3.7412 4.6473 -1.7362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578290929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = -41.581223 kcal Electronic energy + Delta-G solvation = -22610.519836 eV Core-core repulsion = 19132.020435 eV Total energy + Delta-G solvation = -3478.499401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56478 -39.06779 -37.13147 -35.46594 -34.53841 -33.41775 -32.55587 -31.42933 -30.44794 -28.26617 -26.60922 -25.85829 -23.65478 -22.31698 -21.12123 -20.79740 -19.60799 -18.56002 -17.45608 -17.15366 -15.91723 -15.75454 -15.53614 -14.97737 -14.83013 -14.49017 -14.28764 -13.97363 -13.80870 -13.41587 -12.86655 -12.75570 -12.60976 -12.42422 -12.13789 -12.04113 -11.87525 -11.55532 -11.34037 -11.09011 -11.04612 -10.72493 -10.60433 -10.36703 -10.16535 -9.81410 -9.27447 -9.09271 -8.79282 -7.81900 -7.56007 -6.94026 -6.32068 -4.79994 1.90786 2.12388 2.58256 3.09546 3.14718 3.16569 3.21059 3.99658 4.10418 4.32556 4.57031 4.67029 4.72721 4.79019 5.01849 5.33824 5.42464 5.48863 5.61808 5.63675 5.67242 5.75883 5.85986 5.93017 6.11376 6.15807 6.28457 6.34496 6.41653 6.66917 6.87113 7.04913 7.18208 7.29338 7.31145 7.56113 7.76362 7.89790 8.09991 8.22010 8.53638 8.86819 9.25531 10.41809 10.59535 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032974 B = 0.003141 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.940336 B = 8912.765081 C = 9303.791529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 N -0.748 5.748 4 C 0.701 3.299 5 O -0.570 6.570 6 N -0.680 5.680 7 C 0.169 3.831 8 C -0.157 4.157 9 C -0.092 4.092 10 C -0.138 4.138 11 C 0.206 3.794 12 N -0.697 5.697 13 C 0.544 3.456 14 O -0.558 6.558 15 C -0.539 4.539 16 H 0.071 0.929 17 C 0.086 3.914 18 N -0.759 5.759 19 Si 0.913 3.087 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.170 4.170 24 C -0.104 4.104 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.395 0.605 31 H 0.401 0.599 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.144 0.856 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.270 -3.077 7.386 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.405 5.405 4 C 0.401 3.599 5 O -0.446 6.446 6 N -0.327 5.327 7 C 0.075 3.925 8 C -0.179 4.179 9 C -0.112 4.112 10 C -0.160 4.160 11 C 0.106 3.894 12 N -0.340 5.340 13 C 0.351 3.649 14 O -0.439 6.439 15 C -0.575 4.575 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.387 5.387 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.192 1.192 23 C -0.176 4.176 24 C -0.161 4.161 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.229 0.771 31 H 0.236 0.764 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.225 0.775 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.861 -4.755 7.258 19.857 hybrid contribution -0.681 1.773 -0.597 1.991 sum -18.541 -2.981 6.661 19.926 Atomic orbital electron populations 1.22011 0.94490 1.03239 1.02464 1.21156 0.93719 0.81736 1.02541 1.45178 1.05200 1.09174 1.80914 1.15939 0.82620 0.83320 0.78014 1.90947 1.54299 1.43112 1.56233 1.42450 1.06865 1.06522 1.76851 1.16896 0.81052 0.95980 0.98554 1.20997 0.92504 1.01062 1.03295 1.20885 0.94664 0.96929 0.98694 1.21517 1.01384 0.95751 0.97304 1.17493 0.90368 0.90179 0.91337 1.44070 1.26998 1.11631 1.51327 1.18365 0.78236 0.89139 0.79209 1.90627 1.53558 1.33428 1.66309 1.20794 1.07129 1.00516 1.29099 0.91112 1.25741 0.95680 0.96394 0.95670 1.69980 1.10435 1.25957 1.32330 0.86347 0.78325 0.81551 0.80087 1.19140 1.20420 1.19186 1.19286 0.93625 0.99511 1.05151 1.20535 0.97412 0.97758 1.00419 0.92028 0.91969 0.90682 0.91510 0.91557 0.77143 0.76382 0.85226 0.86408 0.83883 0.77492 0.91683 0.92103 0.91064 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 10.03 37.16 0.37 -0.44 16 2 C 0.13 1.11 6.39 -4.04 -0.03 1.08 16 3 N -0.75 -6.98 5.56 -65.22 -0.36 -7.34 16 4 C 0.70 9.81 8.41 -86.92 -0.73 9.08 16 5 O -0.57 -10.49 13.75 5.29 0.07 -10.41 16 6 N -0.68 -8.92 4.75 -14.24 -0.07 -8.99 16 7 C 0.17 2.91 6.28 -83.71 -0.53 2.38 16 8 C -0.16 -2.92 8.70 -39.31 -0.34 -3.27 16 9 C -0.09 -1.80 10.03 -39.64 -0.40 -2.19 16 10 C -0.14 -3.08 8.69 -39.31 -0.34 -3.42 16 11 C 0.21 4.40 6.28 -83.80 -0.53 3.88 16 12 N -0.70 -15.63 4.73 -11.22 -0.05 -15.69 16 13 C 0.54 15.09 7.58 -13.09 -0.10 14.99 16 14 O -0.56 -17.47 12.42 5.14 0.06 -17.40 16 15 C -0.54 -14.67 9.53 -35.70 -0.34 -15.01 16 16 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 17 C 0.09 2.33 5.50 -17.35 -0.10 2.24 16 18 N -0.76 -22.14 11.82 55.55 0.66 -21.48 16 19 Si 0.91 19.51 29.56 -169.99 -5.02 14.48 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.17 -3.02 5.92 -104.22 -0.62 -3.64 16 24 C -0.10 -1.44 8.94 36.00 0.32 -1.11 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.40 2.39 8.49 -40.82 -0.35 2.04 16 31 H 0.40 3.77 7.86 -40.82 -0.32 3.45 16 32 H 0.13 2.41 6.19 -52.49 -0.33 2.09 16 33 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 34 H 0.14 3.59 6.19 -52.49 -0.32 3.27 16 35 H 0.39 7.48 7.81 -40.82 -0.32 7.17 16 36 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.07 7.16 -51.93 -0.37 0.70 16 39 H 0.06 0.67 7.17 -51.93 -0.37 0.30 16 LS Contribution 330.13 15.07 4.98 4.98 Total: -1.00 -36.01 330.13 -7.97 -43.99 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -4.89 Total: 13.31 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -3.35 Total: 4.57 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.17 Total: -53.51 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: 0.14 Total: -27.82 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.01 -7.97 -43.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578290929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.404 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds