Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47187 * 2 1 4 4 C 1.34779 * 120.00117 * 180.02562 * 3 2 1 5 5 O 1.21582 * 119.99622 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99810 * 179.97438 * 4 3 2 7 7 C 1.39941 * 119.99857 * 184.51625 * 6 4 3 8 8 C 1.39008 * 120.02521 * 325.26442 * 7 6 4 9 9 C 1.38188 * 120.08980 * 179.97438 * 8 7 6 10 10 C 1.38131 * 120.15404 * 359.95245 * 9 8 7 11 11 C 1.39068 * 120.05240 * 359.79044 * 10 9 8 12 12 N 1.39523 * 120.04607 * 180.25259 * 11 10 9 13 13 C 1.34774 * 119.99946 * 34.77266 * 12 11 10 14 14 O 1.21749 * 120.00158 * 355.48548 * 13 12 11 15 15 C 1.46153 * 120.00055 * 175.48751 * 13 12 11 16 16 H 1.08005 * 120.00416 * 359.97438 * 15 13 12 17 17 C 1.40127 * 120.00317 * 179.97438 * 15 13 12 18 18 N 1.30642 * 119.99520 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00120 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47144 * 60.00262 * 19 17 15 21 21 H 1.48506 * 109.46907 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47214 * 299.99554 * 19 17 15 23 23 C 1.38662 * 120.02815 * 145.23477 * 7 6 4 24 24 C 1.50697 * 120.07241 * 359.97438 * 23 7 6 25 25 H 1.09003 * 109.46346 * 299.99583 * 1 2 3 26 26 H 1.08999 * 109.47060 * 59.99218 * 1 2 3 27 27 H 1.08993 * 109.46745 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46701 * 240.00018 * 2 1 3 29 29 H 1.08996 * 109.47515 * 120.00561 * 2 1 3 30 30 H 0.97001 * 119.99852 * 359.97438 * 3 2 1 31 31 H 0.96997 * 120.00538 * 4.52079 * 6 4 3 32 32 H 1.07993 * 119.95210 * 359.96776 * 8 7 6 33 33 H 1.08006 * 119.91901 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.96948 * 180.02562 * 10 9 8 35 35 H 0.97006 * 120.00176 * 214.76496 * 12 11 10 36 36 H 0.97003 * 119.99507 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.46968 * 90.00503 * 24 23 7 38 38 H 1.08997 * 109.46993 * 210.00082 * 24 23 7 39 39 H 1.09001 * 109.47599 * 330.00121 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1335 0.7033 -0.0015 6 7 3.7927 2.8982 -0.0010 7 6 5.1650 3.1551 -0.0970 8 6 6.0775 2.2932 0.5002 9 6 7.4329 2.5453 0.4058 10 6 7.8861 3.6537 -0.2827 11 6 6.9789 4.5172 -0.8871 12 7 7.4371 5.6338 -1.5870 13 6 8.5910 5.5678 -2.2802 14 8 9.2750 4.5619 -2.2295 15 6 9.0213 6.7037 -3.0930 16 1 8.4144 7.5960 -3.1384 17 6 10.2213 6.6353 -3.8133 18 7 10.9556 5.5563 -3.7580 19 14 10.7708 8.0870 -4.8526 20 1 10.9405 9.2804 -3.9856 21 1 12.0628 7.7642 -5.5098 22 1 9.7459 8.3698 -5.8892 23 6 5.6156 4.2694 -0.7884 24 6 4.6289 5.2051 -1.4380 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8935 -0.5139 0.8899 30 1 1.3880 2.1185 -0.0004 31 1 3.1649 3.6346 0.0652 32 1 5.7266 1.4253 1.0387 33 1 8.1394 1.8740 0.8712 34 1 8.9461 3.8477 -0.3550 35 1 6.9251 6.4577 -1.5748 36 1 11.7865 5.5091 -4.2564 37 1 4.3474 5.9848 -0.7302 38 1 5.0845 5.6601 -2.3174 39 1 3.7412 4.6473 -1.7362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578290929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = -68.684144 kcal Electronic energy + Delta-G solvation = -22611.695107 eV Core-core repulsion = 19132.020435 eV Total energy + Delta-G solvation = -3479.674672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.82114 -40.61653 -38.85714 -36.49232 -35.93081 -35.11621 -34.58925 -32.78787 -31.41093 -29.80151 -28.29735 -27.45046 -24.70716 -23.54792 -22.45378 -22.24232 -21.24589 -19.83274 -19.21466 -18.58590 -17.59042 -16.95591 -16.90927 -16.39240 -16.26141 -15.80930 -15.63506 -15.35556 -15.07997 -14.74487 -14.53209 -14.27782 -14.15200 -13.44160 -13.26445 -13.18496 -12.97452 -12.74756 -12.69355 -12.66093 -12.48969 -12.37286 -12.19509 -12.07196 -11.56729 -11.22400 -10.95682 -10.62354 -10.15412 -9.85453 -9.05939 -8.64112 -8.34583 -6.92895 0.41692 0.53348 1.40433 1.43976 1.54200 1.56554 2.04524 2.22199 2.40546 2.88609 2.98568 3.24690 3.59253 3.98305 4.12927 4.14520 4.26441 4.28233 4.54591 4.59698 4.64446 4.69846 4.83058 4.87094 4.95431 5.09696 5.24570 5.26516 5.28274 5.35232 5.39745 5.46980 5.56124 5.69879 5.82786 5.92015 6.05123 6.18381 6.42889 6.79241 6.99215 7.37081 7.47667 8.38245 8.58786 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032974 B = 0.003141 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.940336 B = 8912.765081 C = 9303.791529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.128 3.872 3 N -0.725 5.725 4 C 0.695 3.305 5 O -0.618 6.618 6 N -0.664 5.664 7 C 0.179 3.821 8 C -0.158 4.158 9 C -0.095 4.095 10 C -0.167 4.167 11 C 0.176 3.824 12 N -0.685 5.685 13 C 0.529 3.471 14 O -0.607 6.607 15 C -0.564 4.564 16 H 0.095 0.905 17 C 0.028 3.972 18 N -0.815 5.815 19 Si 1.002 2.998 20 H -0.252 1.252 21 H -0.276 1.276 22 H -0.253 1.253 23 C -0.156 4.156 24 C -0.103 4.103 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.415 0.585 31 H 0.424 0.576 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.408 0.592 36 H 0.277 0.723 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.819 -1.370 7.082 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.004 3.996 3 N -0.382 5.382 4 C 0.396 3.604 5 O -0.497 6.497 6 N -0.313 5.313 7 C 0.083 3.917 8 C -0.180 4.180 9 C -0.115 4.115 10 C -0.189 4.189 11 C 0.077 3.923 12 N -0.330 5.330 13 C 0.335 3.665 14 O -0.492 6.492 15 C -0.600 4.600 16 H 0.113 0.887 17 C -0.188 4.188 18 N -0.444 5.444 19 Si 0.821 3.179 20 H -0.176 1.176 21 H -0.201 1.201 22 H -0.177 1.177 23 C -0.162 4.162 24 C -0.159 4.159 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.252 0.748 31 H 0.263 0.737 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.244 0.756 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.551 -3.005 6.993 22.856 hybrid contribution 0.269 1.116 -0.398 1.215 sum -21.282 -1.889 6.595 22.361 Atomic orbital electron populations 1.21952 0.91334 1.04317 1.03471 1.21300 0.96151 0.80778 1.01388 1.45052 1.03715 1.10504 1.78940 1.16181 0.83734 0.82757 0.77754 1.90926 1.55946 1.44518 1.58328 1.42218 1.05473 1.07307 1.76339 1.16904 0.82857 0.94938 0.97020 1.21124 0.92245 1.01329 1.03260 1.20978 0.95757 0.96292 0.98424 1.21295 0.99762 0.97908 0.99966 1.17712 0.91979 0.90196 0.92364 1.43572 1.25850 1.12788 1.50776 1.18773 0.79168 0.88876 0.79634 1.90597 1.55490 1.35133 1.68010 1.21360 1.08100 1.01206 1.29287 0.88663 1.27044 0.95310 0.99757 0.96728 1.70163 1.11265 1.29093 1.33895 0.85000 0.77915 0.76955 0.78033 1.17559 1.20110 1.17663 1.19558 0.92735 1.00033 1.03912 1.20651 0.96890 0.97988 1.00402 0.90784 0.91102 0.89632 0.93076 0.92493 0.74752 0.73743 0.84959 0.85099 0.87959 0.75626 0.91322 0.88631 0.92245 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.03 71.98 0.72 -0.29 16 2 C 0.13 1.87 6.39 86.38 0.55 2.43 16 3 N -0.72 -11.44 5.56 -478.53 -2.66 -14.10 16 4 C 0.70 18.00 8.41 179.05 1.51 19.50 16 5 O -0.62 -22.30 13.75 -3.98 -0.05 -22.36 16 6 N -0.66 -15.52 4.75 -317.23 -1.51 -17.02 16 7 C 0.18 5.87 6.28 38.13 0.24 6.11 16 8 C -0.16 -5.89 8.70 22.44 0.20 -5.69 16 9 C -0.10 -3.87 10.03 22.23 0.22 -3.65 16 10 C -0.17 -7.95 8.69 22.44 0.20 -7.76 16 11 C 0.18 7.71 6.28 38.28 0.24 7.95 16 12 N -0.69 -31.48 4.73 -307.61 -1.46 -32.94 16 13 C 0.53 30.56 7.58 86.30 0.65 31.22 16 14 O -0.61 -40.50 12.42 -4.51 -0.06 -40.55 16 15 C -0.56 -31.12 9.53 24.78 0.24 -30.89 16 16 H 0.10 4.59 7.85 -2.91 -0.02 4.57 16 17 C 0.03 1.52 5.50 85.33 0.47 1.99 16 18 N -0.82 -49.46 11.82 21.85 0.26 -49.20 16 19 Si 1.00 39.88 29.56 68.60 2.03 41.91 16 20 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 21 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 23 C -0.16 -5.36 5.92 -19.60 -0.12 -5.48 16 24 C -0.10 -2.48 8.94 71.23 0.64 -1.85 16 25 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.42 3.30 8.49 -92.71 -0.79 2.51 16 31 H 0.42 6.10 7.86 -92.71 -0.73 5.37 16 32 H 0.13 4.91 6.19 -2.91 -0.02 4.89 16 33 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.10 5.67 6.19 -2.91 -0.02 5.65 16 35 H 0.41 15.47 7.81 -92.70 -0.72 14.75 16 36 H 0.28 15.25 8.29 -92.71 -0.77 14.49 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.63 7.16 -2.39 -0.02 1.61 16 39 H 0.08 1.58 7.17 -2.39 -0.02 1.56 16 Total: -1.00 -84.43 330.13 1.18 -83.24 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -1.12 Total: 37.44 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 5.75 Total: 13.58 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -5.37 Total: -113.26 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -0.11 Total: -62.91 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -84.43 1.18 -83.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578290929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.557 kcal (2) G-P(sol) polarization free energy of solvation -84.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds