Wall clock time and date at job start Tue Mar 31 2020 06:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35667 * 117.00190 * 2 1 4 4 C 1.39496 * 120.01239 * 179.97438 * 3 2 1 5 5 N 1.31950 * 120.11125 * 180.02562 * 4 3 2 6 6 C 1.32197 * 120.14295 * 359.72919 * 5 4 3 7 7 C 1.39235 * 120.02339 * 0.52594 * 6 5 4 8 8 C 1.48127 * 120.05519 * 179.75377 * 7 6 5 9 9 O 1.21520 * 119.99823 * 22.08633 * 8 7 6 10 10 N 1.34778 * 119.99700 * 202.08115 * 8 7 6 11 11 C 1.46922 * 120.63337 * 359.60301 * 10 8 7 12 12 C 1.53193 * 108.89105 * 126.29582 * 11 10 8 13 13 C 1.53354 * 109.14869 * 54.58079 * 12 11 10 14 14 C 1.50707 * 109.40673 * 178.67916 * 13 12 11 15 15 H 1.07996 * 119.99701 * 120.11697 * 14 13 12 16 16 C 1.37880 * 119.99609 * 300.12062 * 14 13 12 17 17 N 1.31507 * 120.00359 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99475 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47158 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46896 * 119.99758 * 18 16 14 21 21 H 1.48500 * 109.47094 * 240.00133 * 18 16 14 22 22 C 1.53035 * 109.60552 * 298.71002 * 13 12 11 23 23 C 1.46932 * 120.62674 * 179.57867 * 10 8 7 24 24 N 1.32160 * 120.01094 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.47197 * 299.99959 * 1 2 3 26 26 H 1.09001 * 109.46868 * 59.99721 * 1 2 3 27 27 H 1.09003 * 109.47166 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.94567 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.98536 * 180.25754 * 6 5 4 30 30 H 1.08993 * 109.58803 * 246.15230 * 11 10 8 31 31 H 1.09001 * 109.58608 * 6.43927 * 11 10 8 32 32 H 1.09003 * 109.49739 * 174.65752 * 12 11 10 33 33 H 1.09000 * 109.50211 * 294.75547 * 12 11 10 34 34 H 1.09004 * 109.43217 * 58.75834 * 13 12 11 35 35 H 0.97004 * 119.99778 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.49935 * 301.42026 * 22 13 12 37 37 H 1.09005 * 109.52089 * 181.34263 * 22 13 12 38 38 H 1.08998 * 109.58533 * 353.42525 * 23 10 8 39 39 H 1.08998 * 109.58151 * 113.70132 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4380 1.2820 0.0005 5 7 4.0391 2.4567 0.0011 6 6 3.3239 3.5684 -0.0043 7 6 1.9331 3.5021 0.0005 8 6 1.1310 4.7474 -0.0001 9 8 1.6205 5.7852 -0.4001 10 7 -0.1417 4.7293 0.4430 11 6 -0.7502 3.4805 0.9215 12 6 -1.3134 3.7100 2.3275 13 6 -2.2707 4.9076 2.2966 14 6 -2.8533 5.1186 3.6704 15 1 -2.6957 6.0545 4.1858 16 6 -3.5874 4.1168 4.2692 17 7 -3.7796 2.9774 3.6414 18 14 -4.3088 4.3781 5.9723 19 1 -3.9509 5.7348 6.4587 20 1 -5.7868 4.2484 5.9090 21 1 -3.7617 3.3588 6.9034 22 6 -1.5085 6.1634 1.8676 23 6 -0.9469 5.9582 0.4572 24 7 1.3255 2.3173 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0255 0.3759 0.0014 29 1 3.8185 4.5285 -0.0081 30 1 -1.5556 3.1853 0.2490 31 1 0.0050 2.6951 0.9541 32 1 -1.8500 2.8194 2.6544 33 1 -0.4955 3.9164 3.0179 34 1 -3.0749 4.7108 1.5875 35 1 -4.2964 2.2728 4.0625 36 1 -0.6890 6.3467 2.5624 37 1 -2.1849 7.0183 1.8691 38 1 -0.3210 6.8083 0.1858 39 1 -1.7668 5.8660 -0.2550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582461434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:35 Heat of formation + Delta-G solvation = -8.844729 kcal Electronic energy + Delta-G solvation = -23796.853832 eV Core-core repulsion = 20319.773991 eV Total energy + Delta-G solvation = -3477.079840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66099 -39.56492 -38.45103 -36.87743 -34.61883 -33.42800 -31.55947 -30.97441 -30.04694 -27.82421 -26.55105 -25.22293 -23.95858 -22.91782 -22.33128 -20.65945 -19.03401 -18.50260 -17.65361 -17.09696 -16.69565 -16.39557 -16.04853 -15.69818 -15.02573 -14.65424 -14.56671 -13.96138 -13.70177 -13.37491 -13.14934 -12.85594 -12.78552 -12.43130 -12.22988 -11.86325 -11.78531 -11.54560 -11.26830 -11.01179 -10.82242 -10.61536 -10.39525 -10.29585 -10.10989 -9.72701 -9.27352 -9.23051 -8.95901 -8.66620 -8.40181 -8.08075 -6.07411 -4.13110 0.29878 0.88086 2.66566 2.81174 3.11034 3.23984 3.32694 3.36841 3.57223 3.86105 4.07299 4.26751 4.37430 4.74434 4.96966 5.15389 5.21805 5.23111 5.26668 5.58597 5.65810 5.82581 5.86028 5.91280 6.07533 6.15334 6.39033 6.49265 6.61694 6.74871 6.84799 6.91082 6.98118 7.08928 7.23419 7.43909 7.61400 7.78319 7.86992 7.98807 8.29160 8.35952 8.90385 9.52049 10.98194 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.005016 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.990602 B = 5580.789631 C = 6598.900790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.298 6.298 3 C 0.269 3.731 4 C 0.060 3.940 5 N -0.406 5.406 6 C 0.060 3.940 7 C 0.086 3.914 8 C 0.565 3.435 9 O -0.544 6.544 10 N -0.572 5.572 11 C 0.074 3.926 12 C -0.124 4.124 13 C 0.047 3.953 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.123 4.123 23 C 0.109 3.891 24 N -0.458 5.458 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.181 0.819 29 H 0.184 0.816 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.034 0.966 34 H 0.028 0.972 35 H 0.259 0.741 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 -5.486 -7.962 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.202 6.202 3 C 0.085 3.915 4 C -0.105 4.105 5 N -0.120 5.120 6 C -0.098 4.098 7 C -0.053 4.053 8 C 0.349 3.651 9 O -0.423 6.423 10 N -0.301 5.301 11 C -0.048 4.048 12 C -0.162 4.162 13 C 0.028 3.972 14 C -0.549 4.549 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.161 4.161 23 C -0.013 4.013 24 N -0.191 5.191 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.198 0.802 29 H 0.201 0.799 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.831 -5.345 -8.137 13.836 hybrid contribution -0.958 0.023 1.070 1.437 sum 8.873 -5.321 -7.067 12.529 Atomic orbital electron populations 1.23143 0.76040 1.03915 1.03448 1.86266 1.23785 1.22978 1.87219 1.21210 0.91197 0.85835 0.93247 1.23171 0.89683 0.97759 0.99855 1.68596 1.38031 0.97667 1.07668 1.23554 0.90499 0.98517 0.97203 1.22071 0.93532 0.91639 0.98053 1.17658 0.81901 0.86244 0.79269 1.90764 1.71030 1.31124 1.49357 1.48174 1.10870 1.11896 1.59177 1.23040 0.98885 0.85203 0.97637 1.22095 0.98307 1.04106 0.91732 1.18721 0.92744 0.89164 0.96544 1.21251 1.31813 1.00341 1.01506 0.92644 1.24949 0.96076 0.95248 0.97665 1.69846 1.40547 1.04996 1.37726 0.86569 0.78869 0.78237 0.84536 1.19812 1.21016 1.21082 1.22009 0.99684 1.01028 0.93384 1.21837 0.94131 0.86032 0.99299 1.68363 1.37920 0.98242 1.14599 0.91071 0.91842 0.87897 0.80225 0.79919 0.92117 0.86691 0.87859 0.94691 0.95425 0.93074 0.92878 0.91874 0.90065 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.36 101.05 1.05 1.36 16 2 O -0.30 -3.46 10.49 -18.70 -0.20 -3.66 16 3 C 0.27 3.43 7.50 -16.94 -0.13 3.30 16 4 C 0.06 0.68 11.18 -17.03 -0.19 0.49 16 5 N -0.41 -5.14 10.48 -12.58 -0.13 -5.27 16 6 C 0.06 0.82 10.75 -17.02 -0.18 0.63 16 7 C 0.09 1.33 6.44 -82.87 -0.53 0.80 16 8 C 0.56 10.00 7.62 -12.20 -0.09 9.91 16 9 O -0.54 -10.45 15.96 5.35 0.09 -10.36 16 10 N -0.57 -10.43 2.97 -173.78 -0.52 -10.95 16 11 C 0.07 1.36 6.00 -3.71 -0.02 1.34 16 12 C -0.12 -2.73 5.17 -26.45 -0.14 -2.87 16 13 C 0.05 1.10 2.07 -91.57 -0.19 0.91 16 14 C -0.51 -13.47 8.56 -34.44 -0.29 -13.77 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -24.07 11.31 55.43 0.63 -23.45 16 18 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.12 -2.48 5.30 -26.62 -0.14 -2.62 16 23 C 0.11 1.95 6.43 -3.71 -0.02 1.93 16 24 N -0.46 -6.71 5.47 -9.69 -0.05 -6.76 16 25 H 0.07 0.85 7.44 -51.93 -0.39 0.47 16 26 H 0.06 0.67 8.11 -51.93 -0.42 0.24 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.18 2.23 7.80 -52.49 -0.41 1.83 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.12 1.99 3.26 -77.30 -0.25 1.73 16 32 H 0.10 2.52 6.05 -51.93 -0.31 2.20 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -29.10 320.99 -6.42 -35.52 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.07 Total: 1.51 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.98 Total: 2.94 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.07 Total: -46.43 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.11 Total: -14.02 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.10 -6.42 -35.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582461434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.678 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds