Wall clock time and date at job start Tue Mar 31 2020 06:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35667 * 117.00190 * 2 1 4 4 C 1.39496 * 120.01239 * 179.97438 * 3 2 1 5 5 N 1.31950 * 120.11125 * 180.02562 * 4 3 2 6 6 C 1.32197 * 120.14295 * 359.72919 * 5 4 3 7 7 C 1.39235 * 120.02339 * 0.52594 * 6 5 4 8 8 C 1.48127 * 120.05519 * 179.75377 * 7 6 5 9 9 O 1.21520 * 119.99823 * 22.08633 * 8 7 6 10 10 N 1.34778 * 119.99700 * 202.08115 * 8 7 6 11 11 C 1.46922 * 120.63337 * 359.60301 * 10 8 7 12 12 C 1.53193 * 108.89105 * 126.29582 * 11 10 8 13 13 C 1.53354 * 109.14869 * 54.58079 * 12 11 10 14 14 C 1.50707 * 109.40673 * 178.67916 * 13 12 11 15 15 H 1.07996 * 119.99701 * 120.11697 * 14 13 12 16 16 C 1.37880 * 119.99609 * 300.12062 * 14 13 12 17 17 N 1.31507 * 120.00359 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99475 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47158 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46896 * 119.99758 * 18 16 14 21 21 H 1.48500 * 109.47094 * 240.00133 * 18 16 14 22 22 C 1.53035 * 109.60552 * 298.71002 * 13 12 11 23 23 C 1.46932 * 120.62674 * 179.57867 * 10 8 7 24 24 N 1.32160 * 120.01094 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.47197 * 299.99959 * 1 2 3 26 26 H 1.09001 * 109.46868 * 59.99721 * 1 2 3 27 27 H 1.09003 * 109.47166 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.94567 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.98536 * 180.25754 * 6 5 4 30 30 H 1.08993 * 109.58803 * 246.15230 * 11 10 8 31 31 H 1.09001 * 109.58608 * 6.43927 * 11 10 8 32 32 H 1.09003 * 109.49739 * 174.65752 * 12 11 10 33 33 H 1.09000 * 109.50211 * 294.75547 * 12 11 10 34 34 H 1.09004 * 109.43217 * 58.75834 * 13 12 11 35 35 H 0.97004 * 119.99778 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.49935 * 301.42026 * 22 13 12 37 37 H 1.09005 * 109.52089 * 181.34263 * 22 13 12 38 38 H 1.08998 * 109.58533 * 353.42525 * 23 10 8 39 39 H 1.08998 * 109.58151 * 113.70132 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4380 1.2820 0.0005 5 7 4.0391 2.4567 0.0011 6 6 3.3239 3.5684 -0.0043 7 6 1.9331 3.5021 0.0005 8 6 1.1310 4.7474 -0.0001 9 8 1.6205 5.7852 -0.4001 10 7 -0.1417 4.7293 0.4430 11 6 -0.7502 3.4805 0.9215 12 6 -1.3134 3.7100 2.3275 13 6 -2.2707 4.9076 2.2966 14 6 -2.8533 5.1186 3.6704 15 1 -2.6957 6.0545 4.1858 16 6 -3.5874 4.1168 4.2692 17 7 -3.7796 2.9774 3.6414 18 14 -4.3088 4.3781 5.9723 19 1 -3.9509 5.7348 6.4587 20 1 -5.7868 4.2484 5.9090 21 1 -3.7617 3.3588 6.9034 22 6 -1.5085 6.1634 1.8676 23 6 -0.9469 5.9582 0.4572 24 7 1.3255 2.3173 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0255 0.3759 0.0014 29 1 3.8185 4.5285 -0.0081 30 1 -1.5556 3.1853 0.2490 31 1 0.0050 2.6951 0.9541 32 1 -1.8500 2.8194 2.6544 33 1 -0.4955 3.9164 3.0179 34 1 -3.0749 4.7108 1.5875 35 1 -4.2964 2.2728 4.0625 36 1 -0.6890 6.3467 2.5624 37 1 -2.1849 7.0183 1.8691 38 1 -0.3210 6.8083 0.1858 39 1 -1.7668 5.8660 -0.2550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582461434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:35 Heat of formation + Delta-G solvation = -27.850747 kcal Electronic energy + Delta-G solvation = -23797.677995 eV Core-core repulsion = 20319.773991 eV Total energy + Delta-G solvation = -3477.904003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.73541 -40.91741 -39.44972 -38.44431 -35.83873 -35.11396 -33.06689 -32.31350 -31.62100 -28.84661 -28.12687 -26.54677 -25.01538 -24.53285 -23.88594 -22.12230 -20.57324 -19.57551 -18.91391 -18.46091 -17.99721 -17.64965 -17.34911 -17.10387 -16.49904 -16.32480 -15.55640 -15.15031 -15.08845 -14.95353 -14.59125 -14.45153 -14.06112 -14.00540 -13.66354 -13.26081 -12.89994 -12.84486 -12.72894 -12.50067 -12.43849 -12.18104 -12.13381 -11.81410 -11.62660 -11.45980 -11.03617 -10.93433 -10.46111 -10.07947 -9.89949 -9.61604 -8.09451 -6.22266 -0.76623 -0.14456 1.38824 1.42259 1.47263 1.52140 1.76515 1.83540 2.42673 2.48775 2.70315 3.04967 3.17489 3.28322 3.53926 3.96827 4.13929 4.27991 4.30331 4.34743 4.39985 4.41603 4.48559 4.55281 4.75061 4.78074 4.90986 4.93041 5.08656 5.14638 5.20190 5.38594 5.47744 5.62249 5.80566 5.90310 5.95918 6.08342 6.28437 6.37492 6.46134 6.87087 6.89131 7.45316 8.94421 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.005016 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.990602 B = 5580.789631 C = 6598.900790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.293 6.293 3 C 0.263 3.737 4 C 0.085 3.915 5 N -0.411 5.411 6 C 0.067 3.933 7 C 0.061 3.939 8 C 0.567 3.433 9 O -0.562 6.562 10 N -0.580 5.580 11 C 0.089 3.911 12 C -0.112 4.112 13 C 0.044 3.956 14 C -0.534 4.534 15 H 0.048 0.952 16 C 0.018 3.982 17 N -0.911 5.911 18 Si 0.948 3.052 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.281 1.281 22 C -0.113 4.113 23 C 0.113 3.887 24 N -0.474 5.474 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.133 0.867 28 H 0.221 0.779 29 H 0.193 0.807 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.019 0.981 34 H 0.004 0.996 35 H 0.261 0.739 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.792 -6.580 -8.252 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.197 6.197 3 C 0.078 3.922 4 C -0.081 4.081 5 N -0.125 5.125 6 C -0.090 4.090 7 C -0.076 4.076 8 C 0.353 3.647 9 O -0.442 6.442 10 N -0.310 5.310 11 C -0.032 4.032 12 C -0.151 4.151 13 C 0.025 3.975 14 C -0.572 4.572 15 H 0.066 0.934 16 C -0.181 4.181 17 N -0.551 5.551 18 Si 0.774 3.226 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.152 4.152 23 C -0.008 4.008 24 N -0.208 5.208 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.237 0.763 29 H 0.209 0.791 30 H 0.078 0.922 31 H 0.150 0.850 32 H 0.097 0.903 33 H 0.038 0.962 34 H 0.022 0.978 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.012 -6.413 -8.433 15.281 hybrid contribution -1.285 0.259 1.141 1.739 sum 9.727 -6.153 -7.292 13.625 Atomic orbital electron populations 1.23263 0.75462 1.05598 1.02403 1.86287 1.24269 1.22176 1.86986 1.21478 0.91924 0.85567 0.93195 1.23848 0.89321 0.98568 0.96401 1.68722 1.37721 0.97838 1.08194 1.23676 0.89751 0.99407 0.96116 1.21723 0.93844 0.90965 1.01089 1.17951 0.81481 0.86984 0.78293 1.90740 1.71239 1.32168 1.50011 1.48189 1.11416 1.11623 1.59725 1.22862 0.99315 0.85945 0.95127 1.21854 0.97154 1.02330 0.93743 1.18692 0.92690 0.91283 0.94805 1.21574 1.32512 1.00209 1.02910 0.93402 1.25622 0.96469 0.95103 1.00867 1.69953 1.40799 1.05427 1.38911 0.85660 0.78187 0.78074 0.80643 1.19673 1.20553 1.20706 1.21856 0.99067 0.99641 0.94594 1.21767 0.94618 0.86552 0.97896 1.68062 1.38906 0.98636 1.15226 0.92939 0.92017 0.84936 0.76276 0.79051 0.92189 0.85050 0.90282 0.96238 0.97759 0.92925 0.93854 0.91192 0.89184 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.36 113.37 1.17 1.71 16 2 O -0.29 -6.10 10.49 -89.83 -0.94 -7.04 16 3 C 0.26 6.13 7.50 84.95 0.64 6.77 16 4 C 0.08 1.62 11.18 84.98 0.95 2.57 16 5 N -0.41 -9.32 10.48 -193.72 -2.03 -11.35 16 6 C 0.07 1.71 10.75 84.88 0.91 2.63 16 7 C 0.06 1.83 6.44 41.81 0.27 2.10 16 8 C 0.57 19.82 7.62 86.87 0.66 20.49 16 9 O -0.56 -21.27 15.96 -3.78 -0.06 -21.33 16 10 N -0.58 -21.12 2.97 -822.01 -2.44 -23.56 16 11 C 0.09 3.32 6.00 86.36 0.52 3.84 16 12 C -0.11 -5.08 5.17 30.78 0.16 -4.92 16 13 C 0.04 2.12 2.07 -11.41 -0.02 2.09 16 14 C -0.53 -28.73 8.56 25.60 0.22 -28.51 16 15 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 16 C 0.02 0.98 5.30 84.66 0.45 1.43 16 17 N -0.91 -49.93 11.31 21.45 0.24 -49.69 16 18 Si 0.95 42.61 29.54 68.60 2.03 44.63 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 C -0.11 -4.63 5.30 30.67 0.16 -4.46 16 23 C 0.11 4.06 6.43 86.36 0.56 4.61 16 24 N -0.47 -13.36 5.47 -297.49 -1.63 -14.99 16 25 H 0.05 1.23 7.44 -2.39 -0.02 1.21 16 26 H 0.06 1.22 8.11 -2.39 -0.02 1.20 16 27 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.22 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.19 4.43 7.80 -2.91 -0.02 4.41 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.13 4.53 3.26 -52.48 -0.17 4.36 16 32 H 0.08 3.98 6.05 -2.39 -0.01 3.97 16 33 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.00 0.22 8.14 -2.39 -0.02 0.21 16 35 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 38 H 0.09 3.08 7.00 -2.39 -0.02 3.06 16 39 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -62.41 320.99 2.71 -59.70 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.91 Total: 13.31 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 6.65 Total: 10.33 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -5.86 Total: -99.60 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -1.00 Total: -28.37 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -62.41 2.71 -59.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582461434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.846 kcal (2) G-P(sol) polarization free energy of solvation -62.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds