Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47286 * 2 1 4 4 C 1.37090 * 120.00513 * 274.40029 * 3 2 1 5 5 H 1.07998 * 119.99920 * 146.55919 * 4 3 2 6 6 C 1.38957 * 119.99984 * 326.56881 * 4 3 2 7 7 N 1.31410 * 119.99512 * 336.98067 * 6 4 3 8 8 Si 1.86803 * 120.00019 * 156.98537 * 6 4 3 9 9 H 1.48491 * 109.47326 * 59.99394 * 8 6 4 10 10 H 1.48496 * 109.47018 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46964 * 299.99704 * 8 6 4 12 12 C 1.34784 * 119.99692 * 94.40408 * 3 2 1 13 13 O 1.21284 * 120.00041 * 180.02562 * 12 3 2 14 14 C 1.50706 * 119.99703 * 0.27221 * 12 3 2 15 15 C 1.53777 * 113.61614 * 278.86254 * 14 12 3 16 16 C 1.53950 * 87.01802 * 220.05220 * 15 14 12 17 17 C 1.50698 * 113.66605 * 139.93571 * 16 15 14 18 18 C 1.38249 * 119.97630 * 322.16527 * 17 16 15 19 19 C 1.38195 * 120.02679 * 179.72843 * 18 17 16 20 20 C 1.38458 * 119.97612 * 0.56538 * 19 18 17 21 21 F 1.35095 * 120.02839 * 179.68361 * 20 19 18 22 22 C 1.38460 * 119.94531 * 359.70918 * 20 19 18 23 23 C 1.38197 * 119.97742 * 359.97438 * 22 20 19 24 24 C 1.53772 * 87.11388 * 25.36265 * 16 15 14 25 25 H 1.08992 * 109.47004 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46776 * 299.99932 * 1 2 3 27 27 H 1.09007 * 109.47057 * 59.99222 * 1 2 3 28 28 H 1.09005 * 109.46589 * 240.00754 * 2 1 3 29 29 H 1.08993 * 109.47237 * 120.00766 * 2 1 3 30 30 H 0.97007 * 119.99109 * 180.02562 * 7 6 4 31 31 H 1.09002 * 112.84764 * 50.06187 * 14 12 3 32 32 H 1.09004 * 113.61473 * 334.57050 * 15 14 12 33 33 H 1.09002 * 113.61618 * 105.46861 * 15 14 12 34 34 H 1.09001 * 113.53797 * 270.81014 * 16 15 14 35 35 H 1.08000 * 119.97952 * 359.97438 * 18 17 16 36 36 H 1.08001 * 120.01159 * 180.24836 * 19 18 17 37 37 H 1.08002 * 120.00963 * 179.97438 * 22 20 19 38 38 H 1.07998 * 119.98985 * 180.02562 * 23 22 20 39 39 H 1.09003 * 113.62022 * 220.09025 * 24 16 15 40 40 H 1.09000 * 113.61634 * 89.19064 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1611 2.0579 -1.1837 5 1 1.9863 3.1230 -1.2212 6 6 2.5303 1.3734 -2.3352 7 7 3.1686 0.2284 -2.2426 8 14 2.1196 2.0809 -4.0146 9 1 2.7664 3.4092 -4.1638 10 1 2.6176 1.1655 -5.0725 11 1 0.6477 2.2299 -4.1424 12 6 2.3275 1.9866 1.1639 13 8 2.7314 3.1303 1.1640 14 6 2.1766 1.2406 2.4646 15 6 0.7346 1.2183 2.9982 16 6 1.3355 1.4275 4.4001 17 6 0.5475 2.3819 5.2597 18 6 -0.0332 3.5021 4.6946 19 6 -0.7608 4.3751 5.4810 20 6 -0.8983 4.1338 6.8374 21 9 -1.6040 4.9899 7.6082 22 6 -0.3116 3.0146 7.4033 23 6 0.4101 2.1395 6.6138 24 6 2.5404 2.0791 3.7013 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.4267 -0.2492 -3.0466 31 1 2.6511 0.2594 2.4473 32 1 0.1284 2.0561 2.6535 33 1 0.2379 0.2560 2.8741 34 1 1.5788 0.4968 4.9127 35 1 0.0785 3.6928 3.6375 36 1 -1.2177 5.2479 5.0385 37 1 -0.4178 2.8256 8.4613 38 1 0.8675 1.2663 7.0550 39 1 3.4996 1.8107 4.1440 40 1 2.4289 3.1526 3.5492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590032849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -35.366676 kcal Electronic energy + Delta-G solvation = -23017.107236 eV Core-core repulsion = 19518.957356 eV Total energy + Delta-G solvation = -3498.149880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.94862 -40.23491 -38.62677 -36.74323 -34.88618 -31.97475 -31.22182 -30.69529 -29.42562 -26.42462 -25.38247 -24.48831 -23.18811 -22.31564 -21.87936 -19.64739 -18.35872 -17.71903 -16.84846 -16.44835 -16.17760 -15.65008 -15.44938 -15.10623 -14.73595 -14.35631 -14.00232 -13.63781 -13.47109 -13.16842 -12.94676 -12.76835 -12.70817 -12.14457 -12.05045 -11.80418 -11.62594 -11.31849 -11.18194 -11.04033 -10.94965 -10.58941 -10.44370 -10.35218 -10.21728 -10.15152 -9.85560 -9.16938 -8.96135 -8.50685 -8.29515 -7.45342 -6.30077 -3.92568 1.07653 1.17125 3.19005 3.25510 3.29281 3.49662 3.89154 4.16217 4.20054 4.57901 4.67515 4.80584 4.88846 4.93843 4.99391 5.11583 5.22046 5.24258 5.29963 5.35676 5.76574 5.86168 5.88384 5.95376 6.00585 6.04872 6.07121 6.09455 6.22522 6.26887 6.29170 6.35324 6.40366 6.54787 6.60478 6.80274 6.84963 6.95625 7.33018 7.62457 8.26506 8.54221 9.21435 9.46063 10.05876 10.71407 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028871 B = 0.003516 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.594850 B = 7961.819059 C = 8249.433864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 N -0.437 5.437 4 C -0.308 4.308 5 H 0.091 0.909 6 C 0.036 3.964 7 N -0.869 5.869 8 Si 0.915 3.085 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.465 3.535 13 O -0.584 6.584 14 C -0.128 4.128 15 C -0.113 4.113 16 C -0.080 4.080 17 C -0.070 4.070 18 C -0.083 4.083 19 C -0.150 4.150 20 C 0.084 3.916 21 F -0.145 7.145 22 C -0.155 4.155 23 C -0.091 4.091 24 C -0.104 4.104 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.114 0.886 29 H 0.048 0.952 30 H 0.267 0.733 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 -1.487 14.417 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.034 4.034 3 N -0.156 5.156 4 C -0.436 4.436 5 H 0.108 0.892 6 C -0.168 4.168 7 N -0.508 5.508 8 Si 0.742 3.258 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.253 3.747 13 O -0.468 6.468 14 C -0.149 4.149 15 C -0.151 4.151 16 C -0.098 4.098 17 C -0.070 4.070 18 C -0.101 4.101 19 C -0.169 4.169 20 C 0.065 3.935 21 F -0.124 7.124 22 C -0.174 4.174 23 C -0.109 4.109 24 C -0.141 4.141 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.086 0.914 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.773 -1.039 14.277 15.836 hybrid contribution -0.319 0.235 -0.730 0.830 sum -7.092 -0.804 13.547 15.312 Atomic orbital electron populations 1.22194 0.98163 1.00052 1.01696 1.21670 0.92204 0.85623 1.03948 1.43510 1.55322 1.11935 1.04812 1.19398 1.45334 0.94414 0.84415 0.89152 1.25284 0.94977 0.96570 0.99953 1.69864 1.34454 1.16720 1.29721 0.86172 0.79056 0.79016 0.81546 1.19782 1.21016 1.19969 1.20076 0.81584 0.88022 0.84997 1.90499 1.50273 1.19010 1.87042 1.22590 0.97673 1.00262 0.94396 1.23052 0.95885 1.02540 0.93629 1.21649 0.96643 0.97436 0.94076 1.19899 0.97524 0.95777 0.93789 1.21057 0.95287 0.93089 1.00685 1.21160 1.02004 1.01640 0.92057 1.17723 0.96405 0.90137 0.89193 1.91475 1.76579 1.69195 1.75145 1.21082 1.00636 0.94771 1.00885 1.20919 0.97927 0.99038 0.93008 1.22865 0.96407 1.00945 0.93913 0.93456 0.93596 0.92547 0.86832 0.93358 0.92238 0.88083 0.89621 0.90807 0.88337 0.84471 0.84852 0.85073 0.85131 0.91445 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 10.21 37.16 0.38 -2.54 16 2 C 0.09 1.90 5.59 -4.04 -0.02 1.87 16 3 N -0.44 -10.82 2.55 -114.81 -0.29 -11.11 16 4 C -0.31 -8.45 8.96 -14.93 -0.13 -8.58 16 5 H 0.09 2.61 7.70 -52.49 -0.40 2.21 16 6 C 0.04 0.94 5.00 -17.47 -0.09 0.85 16 7 N -0.87 -23.15 11.23 55.50 0.62 -22.52 16 8 Si 0.92 20.47 29.61 -169.99 -5.03 15.44 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.47 11.01 7.15 -10.98 -0.08 10.93 16 13 O -0.58 -15.96 15.73 5.55 0.09 -15.88 16 14 C -0.13 -2.22 2.88 -90.96 -0.26 -2.49 16 15 C -0.11 -1.62 5.47 -25.83 -0.14 -1.76 16 16 C -0.08 -0.99 3.98 -90.88 -0.36 -1.35 16 17 C -0.07 -0.84 5.29 -104.62 -0.55 -1.40 16 18 C -0.08 -1.06 8.59 -39.59 -0.34 -1.40 16 19 C -0.15 -1.81 10.03 -39.52 -0.40 -2.20 16 20 C 0.08 1.01 7.30 -39.42 -0.29 0.73 16 21 F -0.15 -1.81 17.27 2.25 0.04 -1.77 16 22 C -0.15 -1.64 10.03 -39.51 -0.40 -2.03 16 23 C -0.09 -0.95 9.71 -39.59 -0.38 -1.33 16 24 C -0.10 -1.59 6.86 -25.92 -0.18 -1.77 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.76 5.86 -51.93 -0.30 0.45 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.11 2.70 5.28 -51.93 -0.27 2.42 16 29 H 0.05 0.91 6.08 -51.93 -0.32 0.59 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.10 1.65 7.02 -51.93 -0.36 1.29 16 32 H 0.09 1.31 6.29 -51.93 -0.33 0.99 16 33 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 34 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.14 1.86 6.68 -52.49 -0.35 1.51 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 1.05 8.05 -52.49 -0.42 0.63 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.66 7.02 -51.93 -0.36 1.30 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -30.42 329.19 -8.05 -38.46 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.19 Total: 4.89 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.24 Total: -12.47 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.33 Total: -33.64 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.09 Total: -15.88 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.42 -8.05 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590032849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.097 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds