Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47286 * 2 1 4 4 C 1.37090 * 120.00513 * 274.40029 * 3 2 1 5 5 H 1.07998 * 119.99920 * 146.55919 * 4 3 2 6 6 C 1.38957 * 119.99984 * 326.56881 * 4 3 2 7 7 N 1.31410 * 119.99512 * 336.98067 * 6 4 3 8 8 Si 1.86803 * 120.00019 * 156.98537 * 6 4 3 9 9 H 1.48491 * 109.47326 * 59.99394 * 8 6 4 10 10 H 1.48496 * 109.47018 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46964 * 299.99704 * 8 6 4 12 12 C 1.34784 * 119.99692 * 94.40408 * 3 2 1 13 13 O 1.21284 * 120.00041 * 180.02562 * 12 3 2 14 14 C 1.50706 * 119.99703 * 0.27221 * 12 3 2 15 15 C 1.53777 * 113.61614 * 278.86254 * 14 12 3 16 16 C 1.53950 * 87.01802 * 220.05220 * 15 14 12 17 17 C 1.50698 * 113.66605 * 139.93571 * 16 15 14 18 18 C 1.38249 * 119.97630 * 322.16527 * 17 16 15 19 19 C 1.38195 * 120.02679 * 179.72843 * 18 17 16 20 20 C 1.38458 * 119.97612 * 0.56538 * 19 18 17 21 21 F 1.35095 * 120.02839 * 179.68361 * 20 19 18 22 22 C 1.38460 * 119.94531 * 359.70918 * 20 19 18 23 23 C 1.38197 * 119.97742 * 359.97438 * 22 20 19 24 24 C 1.53772 * 87.11388 * 25.36265 * 16 15 14 25 25 H 1.08992 * 109.47004 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46776 * 299.99932 * 1 2 3 27 27 H 1.09007 * 109.47057 * 59.99222 * 1 2 3 28 28 H 1.09005 * 109.46589 * 240.00754 * 2 1 3 29 29 H 1.08993 * 109.47237 * 120.00766 * 2 1 3 30 30 H 0.97007 * 119.99109 * 180.02562 * 7 6 4 31 31 H 1.09002 * 112.84764 * 50.06187 * 14 12 3 32 32 H 1.09004 * 113.61473 * 334.57050 * 15 14 12 33 33 H 1.09002 * 113.61618 * 105.46861 * 15 14 12 34 34 H 1.09001 * 113.53797 * 270.81014 * 16 15 14 35 35 H 1.08000 * 119.97952 * 359.97438 * 18 17 16 36 36 H 1.08001 * 120.01159 * 180.24836 * 19 18 17 37 37 H 1.08002 * 120.00963 * 179.97438 * 22 20 19 38 38 H 1.07998 * 119.98985 * 180.02562 * 23 22 20 39 39 H 1.09003 * 113.62022 * 220.09025 * 24 16 15 40 40 H 1.09000 * 113.61634 * 89.19064 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1611 2.0579 -1.1837 5 1 1.9863 3.1230 -1.2212 6 6 2.5303 1.3734 -2.3352 7 7 3.1686 0.2284 -2.2426 8 14 2.1196 2.0809 -4.0146 9 1 2.7664 3.4092 -4.1638 10 1 2.6176 1.1655 -5.0725 11 1 0.6477 2.2299 -4.1424 12 6 2.3275 1.9866 1.1639 13 8 2.7314 3.1303 1.1640 14 6 2.1766 1.2406 2.4646 15 6 0.7346 1.2183 2.9982 16 6 1.3355 1.4275 4.4001 17 6 0.5475 2.3819 5.2597 18 6 -0.0332 3.5021 4.6946 19 6 -0.7608 4.3751 5.4810 20 6 -0.8983 4.1338 6.8374 21 9 -1.6040 4.9899 7.6082 22 6 -0.3116 3.0146 7.4033 23 6 0.4101 2.1395 6.6138 24 6 2.5404 2.0791 3.7013 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.4267 -0.2492 -3.0466 31 1 2.6511 0.2594 2.4473 32 1 0.1284 2.0561 2.6535 33 1 0.2379 0.2560 2.8741 34 1 1.5788 0.4968 4.9127 35 1 0.0785 3.6928 3.6375 36 1 -1.2177 5.2479 5.0385 37 1 -0.4178 2.8256 8.4613 38 1 0.8675 1.2663 7.0550 39 1 3.4996 1.8107 4.1440 40 1 2.4289 3.1526 3.5492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590032849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -50.986579 kcal Electronic energy + Delta-G solvation = -23017.784566 eV Core-core repulsion = 19518.957356 eV Total energy + Delta-G solvation = -3498.827210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.88041 -41.48779 -39.96926 -38.09225 -36.78449 -33.91533 -32.09610 -31.72476 -31.11950 -28.01197 -26.57037 -26.03724 -24.12344 -23.83763 -23.15095 -20.91950 -19.79130 -18.80471 -18.55915 -17.99009 -17.22558 -17.05105 -16.58005 -16.55878 -16.03312 -15.84611 -15.37597 -15.02135 -14.48380 -14.41154 -14.36073 -14.11367 -13.93454 -13.58354 -13.44440 -13.31356 -12.99779 -12.82186 -12.64068 -12.56789 -12.26090 -12.17530 -12.05120 -11.83446 -11.61474 -11.44532 -11.22522 -10.87035 -10.16419 -10.03278 -9.44284 -9.41024 -8.30201 -6.01058 0.16236 0.30799 1.37511 1.40586 1.50262 2.08618 2.31056 2.59903 3.03629 3.14473 3.31438 3.61933 3.73081 3.85289 3.88625 3.98931 4.02429 4.17317 4.31263 4.36551 4.42053 4.53120 4.72009 4.75306 4.83508 4.89374 4.94963 5.01276 5.06719 5.08012 5.11471 5.19192 5.21724 5.32559 5.39556 5.47299 5.48692 5.67835 5.75230 5.96789 6.23377 6.59280 7.22869 7.56128 8.15359 8.68911 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028871 B = 0.003516 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.594850 B = 7961.819059 C = 8249.433864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.088 3.912 3 N -0.451 5.451 4 C -0.344 4.344 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.885 5.885 8 Si 0.975 3.025 9 H -0.279 1.279 10 H -0.270 1.270 11 H -0.266 1.266 12 C 0.450 3.550 13 O -0.636 6.636 14 C -0.129 4.129 15 C -0.108 4.108 16 C -0.053 4.053 17 C -0.080 4.080 18 C -0.099 4.099 19 C -0.161 4.161 20 C 0.072 3.928 21 F -0.150 7.150 22 C -0.150 4.150 23 C -0.080 4.080 24 C -0.108 4.108 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.273 0.727 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.081 0.919 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.774 -3.855 16.305 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.035 4.035 3 N -0.169 5.169 4 C -0.472 4.472 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.523 5.523 8 Si 0.799 3.201 9 H -0.205 1.205 10 H -0.195 1.195 11 H -0.191 1.191 12 C 0.241 3.759 13 O -0.524 6.524 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.070 4.070 17 C -0.080 4.080 18 C -0.117 4.117 19 C -0.180 4.180 20 C 0.053 3.947 21 F -0.129 7.129 22 C -0.168 4.168 23 C -0.097 4.097 24 C -0.146 4.146 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.100 0.900 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.532 -3.442 16.168 18.166 hybrid contribution -0.047 1.015 -1.306 1.655 sum -7.579 -2.427 14.862 16.858 Atomic orbital electron populations 1.22098 0.95672 1.02118 1.01202 1.21773 0.94255 0.83544 1.03904 1.43798 1.55507 1.13140 1.04445 1.19308 1.47518 0.93695 0.86672 0.92341 1.25956 0.94202 0.96882 1.02650 1.69933 1.34237 1.17333 1.30835 0.85287 0.79110 0.78103 0.77635 1.20492 1.19480 1.19102 1.21213 0.80095 0.87787 0.86850 1.90452 1.52317 1.21494 1.88132 1.22667 1.00725 1.00420 0.91176 1.23024 0.93755 1.03122 0.94667 1.21553 0.94023 0.98377 0.93095 1.19943 0.97819 0.95437 0.94797 1.20991 0.96475 0.94248 0.99955 1.21232 1.02312 1.01897 0.92558 1.17939 0.96891 0.90840 0.89064 1.91461 1.76791 1.69527 1.75139 1.21418 0.99445 0.93705 1.02275 1.21250 0.96864 0.99729 0.91886 1.22841 0.98856 0.99144 0.93727 0.89968 0.92234 0.94942 0.89353 0.90716 0.91698 0.86211 0.91513 0.88319 0.84520 0.86518 0.84579 0.82422 0.81613 0.90003 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 10.21 71.98 0.73 -4.52 16 2 C 0.09 3.68 5.59 86.38 0.48 4.17 16 3 N -0.45 -22.93 2.55 -635.53 -1.62 -24.56 16 4 C -0.34 -19.72 8.96 84.04 0.75 -18.96 16 5 H 0.06 3.63 7.70 -2.91 -0.02 3.61 16 6 C 0.01 0.30 5.00 84.93 0.42 0.72 16 7 N -0.89 -47.52 11.23 21.67 0.24 -47.27 16 8 Si 0.97 42.63 29.61 68.60 2.03 44.66 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 C 0.45 22.03 7.15 87.66 0.63 22.65 16 13 O -0.64 -36.92 15.73 -3.04 -0.05 -36.97 16 14 C -0.13 -4.36 2.88 -11.01 -0.03 -4.39 16 15 C -0.11 -2.88 5.47 31.18 0.17 -2.71 16 16 C -0.05 -1.13 3.98 -10.96 -0.04 -1.18 16 17 C -0.08 -1.74 5.29 -19.86 -0.11 -1.85 16 18 C -0.10 -2.53 8.59 22.26 0.19 -2.34 16 19 C -0.16 -3.89 10.03 22.31 0.22 -3.67 16 20 C 0.07 1.62 7.30 22.38 0.16 1.78 16 21 F -0.15 -3.58 17.27 44.97 0.78 -2.80 16 22 C -0.15 -2.67 10.03 22.31 0.22 -2.45 16 23 C -0.08 -1.34 9.71 22.26 0.22 -1.12 16 24 C -0.11 -3.22 6.86 31.12 0.21 -3.00 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 1.86 5.86 -2.39 -0.01 1.85 16 27 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.09 4.19 5.28 -2.38 -0.01 4.18 16 29 H 0.07 2.65 6.08 -2.39 -0.01 2.64 16 30 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16 31 H 0.12 3.60 7.02 -2.39 -0.02 3.59 16 32 H 0.07 2.05 6.29 -2.38 -0.01 2.04 16 33 H 0.10 2.15 7.52 -2.39 -0.02 2.13 16 34 H 0.14 2.01 8.09 -2.39 -0.02 1.99 16 35 H 0.12 3.41 6.68 -2.91 -0.02 3.39 16 36 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 37 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.17 1.65 8.05 -2.91 -0.02 1.62 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.06 2.33 7.02 -2.39 -0.02 2.32 16 Total: -1.00 -70.34 329.19 6.68 -63.66 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.05 Total: 20.14 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 4.24 Total: -16.86 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.38 Total: -71.83 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -0.05 Total: -36.97 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -70.34 6.68 -63.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590032849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.675 kcal (2) G-P(sol) polarization free energy of solvation -70.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds