Wall clock time and date at job start Tue Mar 31 2020 07:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38254 * 120.00089 * 2 1 4 4 C 1.38216 * 120.00084 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.99828 * 359.97438 * 4 3 2 6 6 C 1.38209 * 119.99719 * 359.95930 * 5 4 3 7 7 C 1.38217 * 120.00026 * 179.72498 * 2 1 3 8 8 C 1.50699 * 120.00019 * 359.97438 * 7 2 1 9 9 N 1.46894 * 115.55472 * 270.82184 * 8 7 2 10 10 C 1.46907 * 110.99873 * 294.73756 * 9 8 7 11 11 C 1.53000 * 109.46933 * 179.29435 * 10 9 8 12 12 C 1.53002 * 109.46803 * 179.97438 * 11 10 9 13 13 S 1.80994 * 109.47209 * 179.97438 * 12 11 10 14 14 C 1.76200 * 100.00315 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00242 * 179.97438 * 14 13 12 17 17 N 1.31626 * 119.99979 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99928 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47044 * 90.00395 * 18 16 14 20 20 H 1.48501 * 109.46711 * 210.00218 * 18 16 14 21 21 H 1.48501 * 109.47121 * 330.00242 * 18 16 14 22 22 C 1.53001 * 117.49701 * 125.14575 * 8 7 2 23 23 C 1.53001 * 117.49428 * 56.49041 * 8 7 2 24 24 H 1.09004 * 109.46945 * 89.63674 * 1 2 3 25 25 H 1.09002 * 109.47041 * 329.63856 * 1 2 3 26 26 H 1.08994 * 109.47134 * 209.63898 * 1 2 3 27 27 H 1.08004 * 120.00267 * 359.97438 * 3 2 1 28 28 H 1.08007 * 120.00000 * 179.97438 * 4 3 2 29 29 H 1.08004 * 119.99647 * 179.97438 * 5 4 3 30 30 H 1.08005 * 119.99116 * 180.02562 * 6 5 4 31 31 H 1.00907 * 111.00328 * 58.68434 * 9 8 7 32 32 H 1.09004 * 109.46798 * 299.29398 * 10 9 8 33 33 H 1.08995 * 109.46953 * 59.29222 * 10 9 8 34 34 H 1.09000 * 109.46868 * 299.99517 * 11 10 9 35 35 H 1.08995 * 109.47475 * 60.00106 * 11 10 9 36 36 H 1.08995 * 109.47665 * 300.00483 * 12 11 10 37 37 H 1.09002 * 109.47079 * 60.00076 * 12 11 10 38 38 H 0.96998 * 120.00067 * 179.97438 * 17 16 14 39 39 H 1.08995 * 117.49848 * 0.02562 * 22 8 7 40 40 H 1.09001 * 117.49706 * 145.02155 * 22 8 7 41 41 H 1.09004 * 117.49660 * 214.97919 * 23 8 7 42 42 H 1.08994 * 117.50372 * 359.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5805 -1.1970 0.0009 7 6 2.1980 -1.1970 0.0057 8 6 1.4446 -2.5021 0.0126 9 7 1.1118 -3.0347 1.3405 10 6 2.3271 -3.3968 2.0822 11 6 1.9417 -3.9298 3.4636 12 6 3.2074 -4.3075 4.2358 13 16 2.7517 -4.9373 5.8702 14 6 4.3516 -5.2854 6.5211 15 1 5.2309 -5.0938 5.9240 16 6 4.4820 -5.8049 7.8016 17 7 3.4104 -6.0379 8.5295 18 14 6.1783 -6.1732 8.4919 19 1 6.6982 -4.9726 9.1944 20 1 6.0883 -7.3059 9.4480 21 1 7.0967 -6.5339 7.3821 22 6 1.7675 -3.5100 -1.0922 23 6 0.4421 -2.7448 -1.1174 24 1 -0.3633 0.0065 -1.0277 25 1 -0.3633 0.8867 0.5194 26 1 -0.3633 -0.8932 0.5082 27 1 1.6583 2.1327 -0.0004 28 1 4.1204 2.1327 -0.0010 29 1 5.3517 -0.0001 -0.0014 30 1 4.1206 -2.1323 0.0013 31 1 0.5513 -2.3784 1.8634 32 1 2.8711 -4.1664 1.5345 33 1 2.9592 -2.5162 2.1959 34 1 1.3977 -3.1601 4.0111 35 1 1.3095 -4.8104 3.3499 36 1 3.7512 -5.0771 3.6880 37 1 3.8400 -3.4271 4.3495 38 1 3.5014 -6.4013 9.4243 39 1 2.5253 -3.2293 -1.8237 40 1 1.7328 -4.5684 -0.8338 41 1 -0.4642 -3.3001 -0.8755 42 1 0.3272 -1.9605 -1.8655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592139894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:26 Heat of formation + Delta-G solvation = 29.320567 kcal Electronic energy + Delta-G solvation = -20214.382346 eV Core-core repulsion = 17285.250691 eV Total energy + Delta-G solvation = -2929.131654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29112 -37.58856 -34.89541 -32.88712 -32.41297 -31.11485 -30.69199 -27.18142 -25.76858 -24.91532 -23.19818 -22.61134 -21.56709 -20.92186 -19.68551 -17.45142 -17.02204 -15.90475 -15.61237 -15.27128 -15.05756 -14.78885 -14.62373 -14.32527 -13.97164 -13.66344 -13.29626 -13.05889 -12.88811 -12.55166 -12.32675 -12.10950 -11.85687 -11.56710 -11.40290 -11.34419 -11.25213 -11.05624 -10.80482 -10.76630 -10.58602 -10.34350 -10.02806 -9.48580 -9.03797 -8.99161 -8.84552 -8.49503 -8.27231 -6.49939 -6.20607 -3.90504 1.14195 1.21166 3.22762 3.23525 3.30361 3.48968 3.56676 3.63275 4.02494 4.24933 4.37733 4.66550 4.73960 4.82127 4.91506 5.06946 5.15300 5.18887 5.25257 5.32138 5.37213 5.42581 5.45986 5.51284 5.54477 5.61215 5.66647 5.75577 5.79779 5.88703 5.95394 5.98957 6.06149 6.15772 6.29128 6.33633 6.37349 6.46339 6.63164 6.76652 6.82832 7.04619 7.32915 7.62653 8.38861 9.25641 10.87641 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.003031 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.879315 B = 9234.940535 C = 9792.666649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.072 4.072 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.099 4.099 7 C -0.079 4.079 8 C 0.072 3.928 9 N -0.643 5.643 10 C 0.064 3.936 11 C -0.095 4.095 12 C -0.111 4.111 13 S -0.133 6.133 14 C -0.516 4.516 15 H 0.072 0.928 16 C 0.071 3.929 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.156 4.156 23 C -0.152 4.152 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.343 0.657 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.267 0.733 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 12.552 -21.038 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.117 4.117 7 C -0.081 4.081 8 C -0.019 4.019 9 N -0.273 5.273 10 C -0.066 4.066 11 C -0.134 4.134 12 C -0.260 4.260 13 S 0.096 5.904 14 C -0.664 4.664 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.506 5.506 18 Si 0.744 3.256 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.194 4.194 23 C -0.190 4.190 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.298 11.670 -20.580 24.245 hybrid contribution 2.810 0.872 0.273 2.955 sum -2.488 12.543 -20.308 23.998 Atomic orbital electron populations 1.20867 0.91100 1.02970 1.02329 1.19786 0.96174 0.92357 0.98957 1.21025 0.94289 0.97393 1.01540 1.21147 0.94344 0.98046 0.99923 1.21147 0.99948 0.92492 1.00929 1.21054 0.93584 0.98227 0.98879 1.19574 0.93448 0.93597 1.01459 1.19924 1.02291 0.91661 0.88072 1.60573 1.19597 1.44981 1.02110 1.22021 0.90979 0.99299 0.94264 1.21248 0.97482 1.01633 0.93066 1.23203 0.99281 1.02310 1.01196 1.84619 1.14657 1.82471 1.08679 1.22695 0.91647 1.49231 1.02842 0.91013 1.25011 0.97915 0.94950 0.95919 1.70023 1.28297 1.42004 1.10233 0.86174 0.82541 0.78094 0.78768 1.20294 1.20747 1.19685 1.23094 0.98903 0.98010 0.99382 1.23125 0.94323 1.02599 0.98953 0.91147 0.91753 0.90903 0.86148 0.86182 0.86078 0.86089 0.83784 0.91100 0.94926 0.91908 0.90780 0.92145 0.92402 0.92332 0.88942 0.87929 0.87890 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 8.57 36.00 0.31 -0.64 16 2 C -0.07 -0.74 5.85 -104.63 -0.61 -1.35 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 4 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 5 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 6 C -0.10 -1.11 8.51 -39.59 -0.34 -1.44 16 7 C -0.08 -0.87 4.69 -104.63 -0.49 -1.36 16 8 C 0.07 0.77 0.79 -132.76 -0.11 0.66 16 9 N -0.64 -7.88 6.61 -101.14 -0.67 -8.55 16 10 C 0.06 0.91 5.42 -3.82 -0.02 0.89 16 11 C -0.10 -1.61 5.47 -26.73 -0.15 -1.76 16 12 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 13 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 14 C -0.52 -15.06 9.50 30.94 0.29 -14.76 16 15 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 16 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 17 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 18 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.16 -1.54 9.98 -26.69 -0.27 -1.81 16 23 C -0.15 -1.38 8.54 -26.69 -0.23 -1.61 16 24 H 0.07 0.50 7.71 -51.93 -0.40 0.10 16 25 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.07 0.62 5.98 -51.93 -0.31 0.31 16 27 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 28 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.34 4.08 8.16 -39.29 -0.32 3.76 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.03 0.48 6.84 -51.93 -0.35 0.12 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 37 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.76 7.48 -51.93 -0.39 0.37 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -31.45 358.16 -11.35 -42.80 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.81 Total: 3.13 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -2.67 Total: -28.13 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.07 Total: -34.13 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.45 -11.35 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592139894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.119 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds