Wall clock time and date at job start Tue Mar 31 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38263 * 120.06105 * 2 1 4 4 C 1.38037 * 119.82518 * 180.09930 * 3 2 1 5 5 C 1.38677 * 120.34559 * 0.04126 * 4 3 2 6 6 C 1.37835 * 119.85651 * 359.82152 * 5 4 3 7 7 C 1.38010 * 120.06643 * 180.02562 * 2 1 3 8 8 C 1.50619 * 121.84934 * 180.26035 * 6 5 4 9 9 N 1.46636 * 110.49503 * 342.41824 * 8 6 5 10 10 C 1.46896 * 111.00003 * 175.95378 * 9 8 6 11 11 C 1.53006 * 109.47501 * 66.04264 * 10 9 8 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 S 1.81000 * 109.46638 * 180.02562 * 12 11 10 14 14 C 1.76206 * 99.99929 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99720 * 359.97438 * 14 13 12 16 16 C 1.38796 * 119.99847 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00398 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99778 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47405 * 89.99756 * 18 16 14 20 20 H 1.48503 * 109.46936 * 210.00169 * 18 16 14 21 21 H 1.48506 * 109.47119 * 329.99794 * 18 16 14 22 22 C 1.47150 * 110.25590 * 52.52522 * 9 8 6 23 23 C 1.50717 * 118.48479 * 179.55716 * 5 4 3 24 24 H 1.09004 * 109.46798 * 269.96925 * 1 2 3 25 25 H 1.08992 * 109.47624 * 29.96933 * 1 2 3 26 26 H 1.09004 * 109.47204 * 149.97549 * 1 2 3 27 27 H 1.08001 * 120.08933 * 0.08861 * 3 2 1 28 28 H 1.07997 * 119.82486 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.81203 * 359.93961 * 7 2 1 30 30 H 1.09002 * 109.27063 * 222.15797 * 8 6 5 31 31 H 1.08996 * 109.27441 * 102.67923 * 8 6 5 32 32 H 1.09000 * 109.47017 * 306.04410 * 10 9 8 33 33 H 1.08996 * 109.47227 * 186.04730 * 10 9 8 34 34 H 1.09000 * 109.46866 * 60.00053 * 11 10 9 35 35 H 1.09001 * 109.46611 * 300.00170 * 11 10 9 36 36 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 37 37 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 38 38 H 0.96996 * 120.00393 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.63513 * 48.45413 * 22 9 8 40 40 H 1.09005 * 109.63052 * 169.04531 * 22 9 8 41 41 H 1.08996 * 109.39277 * 283.45346 * 23 5 4 42 42 H 1.08997 * 109.38976 * 43.15679 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1967 0.0000 4 6 3.5800 1.1910 -0.0021 5 6 4.2756 -0.0087 -0.0050 6 6 3.5858 -1.2019 -0.0022 7 6 2.1984 -1.1944 -0.0005 8 6 4.2956 -2.5304 0.0006 9 7 5.6923 -2.3671 -0.4150 10 6 6.4208 -3.6394 -0.3243 11 6 5.8506 -4.6274 -1.3441 12 6 6.6090 -5.9528 -1.2492 13 16 5.9350 -7.1212 -2.4561 14 6 6.9623 -8.5170 -2.1374 15 1 7.7271 -8.4621 -1.3769 16 6 6.7891 -9.6865 -2.8645 17 7 5.8572 -9.7532 -3.7917 18 14 7.8777 -11.1664 -2.5262 19 1 7.2486 -12.0155 -1.4829 20 1 8.0424 -11.9552 -3.7736 21 1 9.2076 -10.7048 -2.0531 22 6 6.3462 -1.3262 0.3939 23 6 5.7821 0.0341 -0.0174 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6621 2.1334 0.0014 28 1 4.1209 2.1257 -0.0025 29 1 1.6565 -2.1286 0.0000 30 1 3.7922 -3.2087 -0.6883 31 1 4.2662 -2.9519 1.0054 32 1 6.3115 -4.0499 0.6795 33 1 7.4767 -3.4694 -0.5343 34 1 5.9599 -4.2169 -2.3480 35 1 4.7947 -4.7975 -1.1340 36 1 6.4994 -6.3631 -0.2453 37 1 7.6651 -5.7831 -1.4590 38 1 5.7360 -10.5707 -4.2996 39 1 6.1436 -1.5022 1.4504 40 1 7.4214 -1.3457 0.2161 41 1 6.1289 0.2811 -1.0208 42 1 6.1283 0.7956 0.6812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595659260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:14 Heat of formation + Delta-G solvation = 2.549060 kcal Electronic energy + Delta-G solvation = -19932.614858 eV Core-core repulsion = 17002.322304 eV Total energy + Delta-G solvation = -2930.292554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29702 -37.77473 -34.45256 -32.60707 -32.39945 -31.88823 -30.10443 -27.04732 -26.30122 -25.48837 -23.84196 -22.48371 -22.14605 -20.81044 -19.29497 -17.45289 -16.47994 -16.03696 -15.74808 -14.85767 -14.78601 -14.72964 -14.62679 -14.49573 -13.92188 -13.72085 -13.27352 -13.06650 -12.99726 -12.68202 -12.55517 -12.22471 -12.06353 -11.88628 -11.55626 -11.30900 -11.29875 -11.05504 -10.89888 -10.83695 -10.65440 -10.56041 -10.27157 -9.50663 -9.04284 -8.92247 -8.50609 -8.31670 -8.27101 -6.50535 -6.21024 -3.91048 1.23232 1.26271 3.22354 3.23181 3.30027 3.53758 3.58307 3.89315 4.24334 4.54040 4.55460 4.73686 4.84266 4.90564 5.08369 5.14709 5.15574 5.25192 5.29247 5.36233 5.37271 5.38790 5.42412 5.45749 5.58786 5.63157 5.66418 5.72927 5.76585 5.87731 5.92512 5.93937 6.06937 6.08410 6.30500 6.37937 6.44229 6.51701 6.61656 6.77386 6.89873 7.01418 7.10728 7.62144 8.38352 9.25186 10.87186 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027945 B = 0.002656 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.722971 B =10541.008903 C =11320.038122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.124 4.124 4 C -0.119 4.119 5 C -0.075 4.075 6 C -0.068 4.068 7 C -0.116 4.116 8 C 0.089 3.911 9 N -0.531 5.531 10 C 0.059 3.941 11 C -0.094 4.094 12 C -0.112 4.112 13 S -0.133 6.133 14 C -0.516 4.516 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.051 3.949 23 C -0.075 4.075 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.267 0.733 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 22.108 9.858 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.137 4.137 5 C -0.075 4.075 6 C -0.069 4.069 7 C -0.134 4.134 8 C -0.038 4.038 9 N -0.255 5.255 10 C -0.069 4.069 11 C -0.133 4.133 12 C -0.262 4.262 13 S 0.096 5.904 14 C -0.664 4.664 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.744 3.256 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.077 4.077 23 C -0.112 4.112 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.376 22.253 8.464 24.647 hybrid contribution 1.623 -1.384 1.890 2.850 sum -4.753 20.869 10.354 23.776 Atomic orbital electron populations 1.20773 0.91261 1.02779 1.02159 1.19802 0.95972 0.93101 1.00243 1.20926 0.94124 0.97384 1.01774 1.21045 0.94188 0.97329 1.01105 1.19553 0.95627 0.92335 0.99964 1.19615 0.93362 0.94396 0.99491 1.20946 0.93287 0.97852 1.01321 1.21039 0.89109 0.94030 0.99670 1.62276 1.01619 1.07616 1.54016 1.22244 0.98157 0.88283 0.98263 1.21285 0.99562 0.92833 0.99633 1.23230 1.01886 0.98112 1.02932 1.84644 1.49531 1.08913 1.47341 1.22692 1.20937 0.98209 1.24558 0.91000 1.25014 0.95792 0.98448 0.94572 1.70021 1.31232 1.27791 1.21503 0.86173 0.80255 0.81247 0.77885 1.20302 1.20755 1.19701 1.22147 0.98931 0.91562 0.95088 1.20531 0.91094 0.96999 1.02581 0.91362 0.91686 0.91444 0.86341 0.86279 0.85968 0.88676 0.93502 0.94833 0.90532 0.90675 0.91737 0.92377 0.92116 0.92324 0.94540 0.90168 0.89805 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.02 36.01 0.36 -0.49 16 2 C -0.09 -0.92 5.87 -104.70 -0.62 -1.53 16 3 C -0.12 -1.19 9.71 -39.65 -0.38 -1.58 16 4 C -0.12 -1.18 9.66 -39.49 -0.38 -1.56 16 5 C -0.07 -0.84 5.77 -104.60 -0.60 -1.44 16 6 C -0.07 -0.83 5.79 -104.63 -0.61 -1.43 16 7 C -0.12 -1.29 9.31 -39.48 -0.37 -1.66 16 8 C 0.09 1.11 4.89 -5.16 -0.03 1.09 16 9 N -0.53 -6.80 4.68 -236.20 -1.11 -7.91 16 10 C 0.06 0.81 4.95 -3.82 -0.02 0.79 16 11 C -0.09 -1.57 5.13 -26.73 -0.14 -1.71 16 12 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 13 S -0.13 -3.51 21.44 -107.50 -2.30 -5.81 16 14 C -0.52 -14.92 9.50 30.94 0.29 -14.63 16 15 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 16 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 17 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 18 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.05 0.54 5.57 -3.74 -0.02 0.52 16 23 C -0.07 -0.72 5.94 -27.93 -0.17 -0.89 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 26 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.10 1.24 6.63 -51.93 -0.34 0.90 16 31 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.03 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.08 1.00 7.91 -51.93 -0.41 0.58 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.08 6.63 -51.93 -0.34 0.73 16 36 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 37 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.04 0.38 8.05 -51.93 -0.42 -0.04 16 40 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -31.71 352.04 -11.91 -43.61 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.95 Total: -1.71 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -2.56 Total: -24.66 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: -0.37 Total: -33.39 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.71 -11.91 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595659260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.161 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds