Wall clock time and date at job start Tue Mar 31 2020 07:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38263 * 120.06105 * 2 1 4 4 C 1.38037 * 119.82518 * 180.09930 * 3 2 1 5 5 C 1.38677 * 120.34559 * 0.04126 * 4 3 2 6 6 C 1.37835 * 119.85651 * 359.82152 * 5 4 3 7 7 C 1.38010 * 120.06643 * 180.02562 * 2 1 3 8 8 C 1.50619 * 121.84934 * 180.26035 * 6 5 4 9 9 N 1.46636 * 110.49503 * 342.41824 * 8 6 5 10 10 C 1.46896 * 111.00003 * 175.95378 * 9 8 6 11 11 C 1.53006 * 109.47501 * 66.04264 * 10 9 8 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 S 1.81000 * 109.46638 * 180.02562 * 12 11 10 14 14 C 1.76206 * 99.99929 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99720 * 359.97438 * 14 13 12 16 16 C 1.38796 * 119.99847 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00398 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99778 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47405 * 89.99756 * 18 16 14 20 20 H 1.48503 * 109.46936 * 210.00169 * 18 16 14 21 21 H 1.48506 * 109.47119 * 329.99794 * 18 16 14 22 22 C 1.47150 * 110.25590 * 52.52522 * 9 8 6 23 23 C 1.50717 * 118.48479 * 179.55716 * 5 4 3 24 24 H 1.09004 * 109.46798 * 269.96925 * 1 2 3 25 25 H 1.08992 * 109.47624 * 29.96933 * 1 2 3 26 26 H 1.09004 * 109.47204 * 149.97549 * 1 2 3 27 27 H 1.08001 * 120.08933 * 0.08861 * 3 2 1 28 28 H 1.07997 * 119.82486 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.81203 * 359.93961 * 7 2 1 30 30 H 1.09002 * 109.27063 * 222.15797 * 8 6 5 31 31 H 1.08996 * 109.27441 * 102.67923 * 8 6 5 32 32 H 1.09000 * 109.47017 * 306.04410 * 10 9 8 33 33 H 1.08996 * 109.47227 * 186.04730 * 10 9 8 34 34 H 1.09000 * 109.46866 * 60.00053 * 11 10 9 35 35 H 1.09001 * 109.46611 * 300.00170 * 11 10 9 36 36 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 37 37 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 38 38 H 0.96996 * 120.00393 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.63513 * 48.45413 * 22 9 8 40 40 H 1.09005 * 109.63052 * 169.04531 * 22 9 8 41 41 H 1.08996 * 109.39277 * 283.45346 * 23 5 4 42 42 H 1.08997 * 109.38976 * 43.15679 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1967 0.0000 4 6 3.5800 1.1910 -0.0021 5 6 4.2756 -0.0087 -0.0050 6 6 3.5858 -1.2019 -0.0022 7 6 2.1984 -1.1944 -0.0005 8 6 4.2956 -2.5304 0.0006 9 7 5.6923 -2.3671 -0.4150 10 6 6.4208 -3.6394 -0.3243 11 6 5.8506 -4.6274 -1.3441 12 6 6.6090 -5.9528 -1.2492 13 16 5.9350 -7.1212 -2.4561 14 6 6.9623 -8.5170 -2.1374 15 1 7.7271 -8.4621 -1.3769 16 6 6.7891 -9.6865 -2.8645 17 7 5.8572 -9.7532 -3.7917 18 14 7.8777 -11.1664 -2.5262 19 1 7.2486 -12.0155 -1.4829 20 1 8.0424 -11.9552 -3.7736 21 1 9.2076 -10.7048 -2.0531 22 6 6.3462 -1.3262 0.3939 23 6 5.7821 0.0341 -0.0174 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6621 2.1334 0.0014 28 1 4.1209 2.1257 -0.0025 29 1 1.6565 -2.1286 0.0000 30 1 3.7922 -3.2087 -0.6883 31 1 4.2662 -2.9519 1.0054 32 1 6.3115 -4.0499 0.6795 33 1 7.4767 -3.4694 -0.5343 34 1 5.9599 -4.2169 -2.3480 35 1 4.7947 -4.7975 -1.1340 36 1 6.4994 -6.3631 -0.2453 37 1 7.6651 -5.7831 -1.4590 38 1 5.7360 -10.5707 -4.2996 39 1 6.1436 -1.5022 1.4504 40 1 7.4214 -1.3457 0.2161 41 1 6.1289 0.2811 -1.0208 42 1 6.1283 0.7956 0.6812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595659260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:13 Heat of formation + Delta-G solvation = -14.328612 kcal Electronic energy + Delta-G solvation = -19933.346729 eV Core-core repulsion = 17002.322304 eV Total energy + Delta-G solvation = -2931.024425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11729 -38.69650 -35.48725 -34.60720 -33.60397 -32.74214 -30.99183 -27.97172 -27.79864 -27.13076 -24.93323 -23.34571 -22.91976 -22.11913 -20.12477 -19.55644 -17.38871 -16.97177 -16.89912 -16.65763 -16.12970 -15.90223 -15.68883 -15.43817 -15.14676 -14.74515 -14.46739 -14.17069 -13.86443 -13.71722 -13.54119 -13.27948 -13.21134 -13.09572 -12.92525 -12.77385 -12.65260 -12.50369 -12.27345 -12.04633 -11.75858 -11.67113 -11.46822 -11.25705 -11.14213 -10.31734 -9.75217 -9.31944 -9.22729 -8.67227 -8.37429 -6.14007 0.44686 0.47437 1.31061 1.39267 1.48596 1.73997 2.28133 2.77836 2.87684 2.96705 3.32581 3.71045 3.76726 3.96884 4.02012 4.10507 4.16119 4.21499 4.31248 4.37899 4.41454 4.47454 4.52102 4.57634 4.62020 4.71964 4.73409 4.81077 4.83850 4.88934 4.92573 5.00416 5.14315 5.16798 5.19099 5.28871 5.36299 5.39449 5.54898 5.66386 5.72860 6.05659 6.07060 6.17987 6.18975 7.04577 8.72110 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027945 B = 0.002656 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.722971 B =10541.008903 C =11320.038122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.128 4.128 4 C -0.122 4.122 5 C -0.090 4.090 6 C -0.090 4.090 7 C -0.133 4.133 8 C 0.092 3.908 9 N -0.542 5.542 10 C 0.070 3.930 11 C -0.082 4.082 12 C -0.086 4.086 13 S -0.201 6.201 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.014 3.986 17 N -0.908 5.908 18 Si 0.995 3.005 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.262 1.262 22 C 0.050 3.950 23 C -0.071 4.071 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.271 0.729 39 H 0.038 0.962 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 23.457 11.063 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.091 4.091 6 C -0.091 4.091 7 C -0.152 4.152 8 C -0.035 4.035 9 N -0.266 5.266 10 C -0.059 4.059 11 C -0.121 4.121 12 C -0.235 4.235 13 S 0.028 5.972 14 C -0.685 4.685 15 H 0.091 0.909 16 C -0.191 4.191 17 N -0.545 5.545 18 Si 0.817 3.183 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.186 1.186 22 C -0.078 4.078 23 C -0.108 4.108 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.141 0.859 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.551 23.619 9.674 26.120 hybrid contribution 1.305 -1.687 1.532 2.627 sum -4.246 21.932 11.207 24.992 Atomic orbital electron populations 1.20810 0.89636 1.03422 1.02954 1.20136 0.97334 0.92919 0.99595 1.21282 0.94349 0.98153 1.00795 1.21358 0.94583 0.97795 1.00276 1.19823 0.96597 0.92469 1.00162 1.19705 0.93853 0.94488 1.01027 1.21112 0.93333 0.98634 1.02110 1.20949 0.89076 0.94413 0.99090 1.62235 1.01770 1.07507 1.55066 1.22058 0.98505 0.88115 0.97208 1.21155 0.99020 0.91731 1.00236 1.23141 1.02034 0.97725 1.00638 1.84689 1.50977 1.10939 1.50637 1.23038 1.21295 0.99239 1.24918 0.90854 1.26091 0.97213 1.01752 0.94041 1.70158 1.32923 1.28895 1.22498 0.85003 0.78321 0.76874 0.78122 1.19263 1.19908 1.18643 1.22246 0.99535 0.91191 0.94805 1.20557 0.90136 0.97010 1.03116 0.90408 0.90335 0.91536 0.83983 0.83972 0.85937 0.90258 0.93626 0.94253 0.89404 0.91740 0.92225 0.91968 0.91660 0.91967 0.94366 0.88830 0.89973 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.02 71.24 0.71 -0.82 16 2 C -0.10 -1.91 5.87 -19.91 -0.12 -2.02 16 3 C -0.13 -2.20 9.71 22.23 0.22 -1.99 16 4 C -0.12 -2.18 9.66 22.33 0.22 -1.96 16 5 C -0.09 -1.91 5.77 -19.85 -0.11 -2.02 16 6 C -0.09 -2.17 5.79 -19.87 -0.12 -2.29 16 7 C -0.13 -3.00 9.31 22.33 0.21 -2.79 16 8 C 0.09 2.33 4.89 85.58 0.42 2.75 16 9 N -0.54 -13.44 4.68 -901.21 -4.22 -17.67 16 10 C 0.07 1.84 4.95 86.31 0.43 2.27 16 11 C -0.08 -2.76 5.13 30.60 0.16 -2.60 16 12 C -0.09 -3.50 5.67 71.98 0.41 -3.09 16 13 S -0.20 -10.93 21.44 -56.49 -1.21 -12.14 16 14 C -0.54 -31.43 9.50 67.95 0.65 -30.79 16 15 H 0.07 4.12 7.80 -2.91 -0.02 4.09 16 16 C 0.01 0.79 5.49 84.86 0.47 1.26 16 17 N -0.91 -55.58 13.22 21.65 0.29 -55.29 16 18 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 C 0.05 0.96 5.57 86.22 0.48 1.44 16 23 C -0.07 -1.23 5.94 29.82 0.18 -1.06 16 24 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.08 0.85 8.09 -2.39 -0.02 0.84 16 26 H 0.07 0.91 8.09 -2.38 -0.02 0.89 16 27 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 28 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 29 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.08 2.18 6.63 -2.39 -0.02 2.17 16 31 H 0.05 1.13 8.08 -2.39 -0.02 1.11 16 32 H 0.04 0.99 8.07 -2.39 -0.02 0.97 16 33 H 0.09 2.11 7.91 -2.39 -0.02 2.10 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.06 2.04 6.63 -2.39 -0.02 2.03 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.06 2.59 8.14 -2.40 -0.02 2.57 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.04 0.73 8.05 -2.39 -0.02 0.71 16 40 H 0.09 1.55 7.87 -2.38 -0.02 1.53 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -68.85 352.04 2.04 -66.80 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.97 Total: 15.68 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 4.19 Total: -43.71 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -3.94 Total: -72.96 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -10.93 SS G_CDS: -1.21 Total: -12.14 kcal Total: -68.85 2.04 -66.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595659260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.476 kcal (2) G-P(sol) polarization free energy of solvation -68.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds