Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99795 * 2 1 4 4 N 1.46498 * 109.47497 * 124.99837 * 3 2 1 5 5 C 1.46499 * 119.99828 * 270.00059 * 4 3 2 6 6 C 1.50694 * 109.47205 * 269.99688 * 5 4 3 7 7 H 1.07999 * 119.99984 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00039 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00322 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99972 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47159 * 90.00104 * 10 8 6 12 12 H 1.48501 * 109.47303 * 210.00253 * 10 8 6 13 13 H 1.48505 * 109.47360 * 329.99936 * 10 8 6 14 14 C 1.38572 * 119.99811 * 89.99669 * 4 3 2 15 15 C 1.39839 * 120.50162 * 5.00274 * 14 4 3 16 16 C 1.38304 * 118.44315 * 179.72426 * 15 14 4 17 17 N 1.32327 * 119.26741 * 0.25226 * 16 15 14 18 18 C 1.32428 * 120.96286 * 0.02562 * 17 16 15 19 19 C 1.48467 * 119.15072 * 179.97438 * 18 17 16 20 20 O 1.21386 * 119.99779 * 179.97438 * 19 18 17 21 21 O 1.34637 * 120.00166 * 359.97438 * 19 18 17 22 22 C 1.45199 * 117.00160 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.46912 * 180.02562 * 22 21 19 24 24 N 1.32487 * 121.69686 * 0.02562 * 18 17 16 25 25 H 1.07999 * 119.99724 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00386 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00653 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47086 * 4.99934 * 3 2 1 29 29 H 1.09002 * 109.46908 * 245.00150 * 3 2 1 30 30 H 1.08999 * 109.47243 * 30.00115 * 5 4 3 31 31 H 1.09005 * 109.46559 * 149.99695 * 5 4 3 32 32 H 0.96988 * 120.00268 * 180.02562 * 9 8 6 33 33 H 1.08002 * 120.78210 * 0.02562 * 15 14 4 34 34 H 1.07996 * 120.36534 * 180.23096 * 16 15 14 35 35 H 1.09001 * 109.46764 * 299.99992 * 22 21 19 36 36 H 1.09001 * 109.46973 * 59.99919 * 22 21 19 37 37 H 1.09002 * 109.46713 * 180.02562 * 23 22 21 38 38 H 1.09001 * 109.47251 * 299.99511 * 23 22 21 39 39 H 1.08997 * 109.47092 * 60.00261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5587 1.8652 2.4248 6 6 2.8440 3.3438 2.4803 7 1 3.3031 3.8372 1.6364 8 6 2.5191 4.0668 3.6085 9 7 1.9605 3.4659 4.6364 10 14 2.8734 5.8995 3.6775 11 1 1.7008 6.6502 3.1612 12 1 3.1379 6.3000 5.0829 13 1 4.0634 6.2055 2.8434 14 6 4.2850 0.8533 0.9782 15 6 4.7442 0.4389 -0.2760 16 6 6.0424 -0.0263 -0.3815 17 7 6.8038 -0.0699 0.6999 18 6 6.3400 0.3240 1.8761 19 6 7.2291 0.2573 3.0633 20 8 6.8200 0.6149 4.1487 21 8 8.4891 -0.1998 2.9359 22 6 9.3018 -0.2366 4.1386 23 6 10.6911 -0.7799 3.7989 24 7 5.1028 0.7751 2.0209 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.4887 1.6968 2.5459 31 1 3.0989 1.3605 3.2259 32 1 1.7316 3.9745 5.4298 33 1 4.1018 0.4857 -1.1429 34 1 6.4302 -0.3507 -1.3358 35 1 9.3952 0.7706 4.5448 36 1 8.8287 -0.8838 4.8771 37 1 11.3010 -0.8079 4.7018 38 1 10.5980 -1.7870 3.3924 39 1 11.1639 -0.1323 3.0606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596237411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = 3.211096 kcal Electronic energy + Delta-G solvation = -22864.771090 eV Core-core repulsion = 19388.214030 eV Total energy + Delta-G solvation = -3476.557060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80544 -39.72895 -37.13239 -36.34679 -33.80002 -32.88289 -32.36162 -31.73215 -30.69044 -27.76447 -25.89563 -25.29699 -23.64916 -22.91232 -21.54047 -20.89660 -19.72185 -17.90909 -17.35238 -16.69141 -16.47109 -16.29193 -15.98248 -15.20511 -14.84699 -14.72316 -14.29473 -14.10561 -13.91993 -13.42913 -13.24803 -12.85661 -12.79354 -12.41061 -11.88187 -11.75438 -11.58342 -11.35869 -11.28987 -10.94500 -10.76832 -10.66020 -10.59585 -10.41362 -10.19466 -10.11877 -9.74698 -9.41418 -9.23997 -8.72259 -8.44055 -7.27677 -6.04804 -4.11208 0.85884 1.78568 2.29914 2.50313 2.73382 3.28639 3.36192 3.39523 3.67288 4.30894 4.33035 4.42799 4.75784 4.93018 4.97487 4.99979 5.15340 5.27098 5.28759 5.30897 5.36818 5.40004 5.57509 5.70194 5.74635 5.86429 5.91469 5.94104 6.09575 6.39555 6.49160 6.72391 6.82078 6.91626 7.31028 7.45296 7.73244 7.86439 8.01876 8.05595 8.18809 8.62690 8.91952 9.53384 11.02196 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.005576 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.941938 B = 5020.542404 C = 6862.565706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.170 4.170 3 C 0.147 3.853 4 N -0.563 5.563 5 C 0.248 3.752 6 C -0.530 4.530 7 H 0.056 0.944 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.447 3.553 15 C -0.287 4.287 16 C 0.164 3.836 17 N -0.535 5.535 18 C 0.337 3.663 19 C 0.536 3.464 20 O -0.462 6.462 21 O -0.335 6.335 22 C 0.059 3.941 23 C -0.149 4.149 24 N -0.502 5.502 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.264 0.736 33 H 0.144 0.856 34 H 0.166 0.834 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.654 -9.006 -9.374 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.189 4.189 3 C 0.023 3.977 4 N -0.269 5.269 5 C 0.129 3.871 6 C -0.569 4.569 7 H 0.074 0.926 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.202 3.798 15 C -0.317 4.317 16 C 0.002 3.998 17 N -0.259 5.259 18 C 0.066 3.934 19 C 0.375 3.625 20 O -0.344 6.344 21 O -0.251 6.251 22 C -0.015 4.015 23 C -0.206 4.206 24 N -0.228 5.228 25 H 0.114 0.886 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.183 0.817 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.823 -8.794 -7.938 14.196 hybrid contribution -0.498 1.142 -0.425 1.316 sum 7.324 -7.652 -8.362 13.495 Atomic orbital electron populations 1.23830 0.95772 1.01887 1.00141 1.23395 0.96376 0.98949 1.00224 1.20639 0.92199 0.95687 0.89168 1.47280 1.06225 1.59202 1.14215 1.19475 0.95595 0.93944 0.78037 1.21361 1.41125 0.93075 1.01307 0.92613 1.24891 0.94944 0.98646 0.95240 1.69920 1.41670 1.36125 1.05090 0.86522 0.78539 0.85066 0.77440 1.20638 1.20999 1.20000 1.18455 0.86665 0.86912 0.87802 1.22409 0.99730 1.11310 0.98276 1.22742 0.89172 0.91189 0.96687 1.68290 1.37958 1.20813 0.98847 1.20824 0.88348 0.94347 0.89913 1.20063 0.80592 0.75120 0.86767 1.90908 1.74696 1.41974 1.26792 1.86622 1.23366 1.76617 1.38515 1.23086 0.90744 1.02301 0.85353 1.21777 0.93820 1.02280 1.02755 1.67685 1.03378 1.18695 1.33073 0.88637 0.88201 0.87675 0.88831 0.90362 0.94867 0.92759 0.92641 0.83877 0.81695 0.91043 0.91092 0.90358 0.91443 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 14.32 29.01 0.42 -1.83 16 2 C -0.17 -2.37 9.85 -36.02 -0.35 -2.72 16 3 C 0.15 2.31 5.71 -5.19 -0.03 2.28 16 4 N -0.56 -11.63 2.54 -176.39 -0.45 -12.08 16 5 C 0.25 6.38 5.24 -5.20 -0.03 6.35 16 6 C -0.53 -14.82 9.39 -34.44 -0.32 -15.15 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 9 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 10 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 14 C 0.45 9.04 7.39 -154.88 -1.14 7.89 16 15 C -0.29 -4.43 9.34 -38.96 -0.36 -4.79 16 16 C 0.16 2.36 11.29 -17.31 -0.20 2.17 16 17 N -0.54 -9.44 10.15 -11.22 -0.11 -9.56 16 18 C 0.34 6.92 7.59 -157.11 -1.19 5.72 16 19 C 0.54 10.70 7.99 34.95 0.28 10.98 16 20 O -0.46 -10.51 16.65 -19.18 -0.32 -10.83 16 21 O -0.34 -5.51 10.02 -40.32 -0.40 -5.92 16 22 C 0.06 0.74 6.19 37.16 0.23 0.97 16 23 C -0.15 -1.33 10.29 37.16 0.38 -0.95 16 24 N -0.50 -11.51 8.92 -10.37 -0.09 -11.60 16 25 H 0.10 1.04 8.06 -52.49 -0.42 0.62 16 26 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 27 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.09 1.52 7.72 -51.93 -0.40 1.12 16 29 H 0.08 1.02 6.04 -51.93 -0.31 0.70 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.05 1.58 7.33 -51.93 -0.38 1.20 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.14 1.72 6.16 -52.49 -0.32 1.40 16 34 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -33.86 346.63 -8.04 -41.90 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.18 Total: -1.06 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -2.42 Total: 12.70 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.08 Total: -59.02 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.72 Total: -16.75 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.86 -8.04 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596237411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.111 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds