Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99795 * 2 1 4 4 N 1.46498 * 109.47497 * 124.99837 * 3 2 1 5 5 C 1.46499 * 119.99828 * 270.00059 * 4 3 2 6 6 C 1.50694 * 109.47205 * 269.99688 * 5 4 3 7 7 H 1.07999 * 119.99984 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00039 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00322 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99972 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47159 * 90.00104 * 10 8 6 12 12 H 1.48501 * 109.47303 * 210.00253 * 10 8 6 13 13 H 1.48505 * 109.47360 * 329.99936 * 10 8 6 14 14 C 1.38572 * 119.99811 * 89.99669 * 4 3 2 15 15 C 1.39839 * 120.50162 * 5.00274 * 14 4 3 16 16 C 1.38304 * 118.44315 * 179.72426 * 15 14 4 17 17 N 1.32327 * 119.26741 * 0.25226 * 16 15 14 18 18 C 1.32428 * 120.96286 * 0.02562 * 17 16 15 19 19 C 1.48467 * 119.15072 * 179.97438 * 18 17 16 20 20 O 1.21386 * 119.99779 * 179.97438 * 19 18 17 21 21 O 1.34637 * 120.00166 * 359.97438 * 19 18 17 22 22 C 1.45199 * 117.00160 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.46912 * 180.02562 * 22 21 19 24 24 N 1.32487 * 121.69686 * 0.02562 * 18 17 16 25 25 H 1.07999 * 119.99724 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00386 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00653 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47086 * 4.99934 * 3 2 1 29 29 H 1.09002 * 109.46908 * 245.00150 * 3 2 1 30 30 H 1.08999 * 109.47243 * 30.00115 * 5 4 3 31 31 H 1.09005 * 109.46559 * 149.99695 * 5 4 3 32 32 H 0.96988 * 120.00268 * 180.02562 * 9 8 6 33 33 H 1.08002 * 120.78210 * 0.02562 * 15 14 4 34 34 H 1.07996 * 120.36534 * 180.23096 * 16 15 14 35 35 H 1.09001 * 109.46764 * 299.99992 * 22 21 19 36 36 H 1.09001 * 109.46973 * 59.99919 * 22 21 19 37 37 H 1.09002 * 109.46713 * 180.02562 * 23 22 21 38 38 H 1.09001 * 109.47251 * 299.99511 * 23 22 21 39 39 H 1.08997 * 109.47092 * 60.00261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5587 1.8652 2.4248 6 6 2.8440 3.3438 2.4803 7 1 3.3031 3.8372 1.6364 8 6 2.5191 4.0668 3.6085 9 7 1.9605 3.4659 4.6364 10 14 2.8734 5.8995 3.6775 11 1 1.7008 6.6502 3.1612 12 1 3.1379 6.3000 5.0829 13 1 4.0634 6.2055 2.8434 14 6 4.2850 0.8533 0.9782 15 6 4.7442 0.4389 -0.2760 16 6 6.0424 -0.0263 -0.3815 17 7 6.8038 -0.0699 0.6999 18 6 6.3400 0.3240 1.8761 19 6 7.2291 0.2573 3.0633 20 8 6.8200 0.6149 4.1487 21 8 8.4891 -0.1998 2.9359 22 6 9.3018 -0.2366 4.1386 23 6 10.6911 -0.7799 3.7989 24 7 5.1028 0.7751 2.0209 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.4887 1.6968 2.5459 31 1 3.0989 1.3605 3.2259 32 1 1.7316 3.9745 5.4298 33 1 4.1018 0.4857 -1.1429 34 1 6.4302 -0.3507 -1.3358 35 1 9.3952 0.7706 4.5448 36 1 8.8287 -0.8838 4.8771 37 1 11.3010 -0.8079 4.7018 38 1 10.5980 -1.7870 3.3924 39 1 11.1639 -0.1323 3.0606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596237411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = -17.304492 kcal Electronic energy + Delta-G solvation = -22865.660713 eV Core-core repulsion = 19388.214030 eV Total energy + Delta-G solvation = -3477.446683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.24305 -41.16063 -38.57404 -37.78498 -35.21501 -34.78872 -33.72465 -32.85451 -32.09924 -29.51981 -27.40870 -26.61239 -25.42071 -23.97581 -23.09089 -22.29974 -20.86226 -19.37286 -18.79634 -18.61088 -17.95052 -17.79880 -17.33401 -16.65819 -16.42912 -16.17838 -15.68948 -15.45454 -15.18067 -14.74846 -14.58564 -14.38710 -14.09272 -13.62963 -13.32318 -13.19228 -12.96481 -12.81684 -12.60912 -12.57241 -12.52893 -12.28999 -12.13712 -11.97391 -11.60340 -11.57280 -11.54897 -10.95152 -10.64623 -10.33624 -10.17870 -8.86267 -8.18570 -6.36786 -0.57687 0.44216 1.06621 1.24851 1.31101 1.33444 1.36275 1.45564 2.22382 2.39008 2.91487 3.03244 3.07778 3.45628 3.73381 3.99072 3.99483 4.06929 4.10012 4.19566 4.23299 4.33233 4.48093 4.59220 4.76526 4.83299 4.92593 4.94503 5.02958 5.04622 5.19802 5.32933 5.38392 5.58841 5.68759 5.74019 5.89191 6.04746 6.25449 6.42885 6.56139 6.74675 7.20219 7.33138 8.84274 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.005576 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.941938 B = 5020.542404 C = 6862.565706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.184 4.184 3 C 0.145 3.855 4 N -0.577 5.577 5 C 0.272 3.728 6 C -0.537 4.537 7 H 0.051 0.949 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.962 3.038 11 H -0.261 1.261 12 H -0.284 1.284 13 H -0.276 1.276 14 C 0.418 3.582 15 C -0.260 4.260 16 C 0.170 3.830 17 N -0.528 5.528 18 C 0.313 3.687 19 C 0.538 3.462 20 O -0.507 6.507 21 O -0.330 6.330 22 C 0.046 3.954 23 C -0.139 4.139 24 N -0.558 5.558 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.017 0.983 31 H 0.007 0.993 32 H 0.266 0.734 33 H 0.186 0.814 34 H 0.226 0.774 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.716 -9.366 -12.306 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.203 4.203 3 C 0.024 3.976 4 N -0.285 5.285 5 C 0.151 3.849 6 C -0.576 4.576 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.209 1.209 13 H -0.200 1.200 14 C 0.175 3.825 15 C -0.288 4.288 16 C 0.009 3.991 17 N -0.252 5.252 18 C 0.043 3.957 19 C 0.378 3.622 20 O -0.392 6.392 21 O -0.244 6.244 22 C -0.027 4.027 23 C -0.196 4.196 24 N -0.285 5.285 25 H 0.134 0.866 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.035 0.965 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.203 0.797 34 H 0.242 0.758 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.918 -9.184 -10.934 16.835 hybrid contribution -0.756 1.147 0.415 1.435 sum 8.162 -8.037 -10.519 15.552 Atomic orbital electron populations 1.24048 0.95534 1.02896 0.98135 1.23312 0.96729 0.98270 1.01974 1.20853 0.91792 0.96317 0.88673 1.47096 1.07476 1.60373 1.13556 1.18738 0.93654 0.92590 0.79939 1.21644 1.40492 0.94367 1.01125 0.93069 1.25778 0.94777 1.03338 0.94910 1.70048 1.42888 1.37908 1.05711 0.85505 0.78806 0.79710 0.77318 1.18585 1.20914 1.20049 1.18946 0.86247 0.88092 0.89261 1.22824 1.00461 1.08340 0.97215 1.23745 0.88428 0.89315 0.97586 1.68373 1.38327 1.19821 0.98712 1.20880 0.88010 0.95759 0.91092 1.20281 0.81420 0.74230 0.86296 1.90870 1.75718 1.44278 1.28345 1.86625 1.21967 1.75526 1.40324 1.23530 0.92074 1.02612 0.84458 1.21808 0.91318 1.02244 1.04248 1.67546 1.04937 1.20456 1.35594 0.86636 0.88210 0.87074 0.90061 0.87064 0.96535 0.97457 0.92545 0.79688 0.75794 0.91357 0.91015 0.87580 0.90879 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 14.32 67.78 0.97 -3.01 16 2 C -0.18 -4.83 9.85 25.65 0.25 -4.58 16 3 C 0.15 4.41 5.71 85.63 0.49 4.90 16 4 N -0.58 -24.17 2.54 -711.99 -1.81 -25.98 16 5 C 0.27 14.72 5.24 85.63 0.45 15.17 16 6 C -0.54 -31.10 9.39 25.60 0.24 -30.86 16 7 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 8 C 0.01 0.66 5.46 84.65 0.46 1.12 16 9 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 10 Si 0.96 45.98 29.54 68.60 2.03 48.01 16 11 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 C 0.42 16.85 7.39 133.28 0.98 17.83 16 15 C -0.26 -7.16 9.34 22.67 0.21 -6.95 16 16 C 0.17 4.22 11.29 84.63 0.96 5.18 16 17 N -0.53 -17.72 10.15 -189.41 -1.92 -19.64 16 18 C 0.31 13.07 7.59 137.66 1.05 14.12 16 19 C 0.54 22.34 7.99 70.55 0.56 22.90 16 20 O -0.51 -24.58 16.65 20.21 0.34 -24.24 16 21 O -0.33 -10.93 10.02 -55.45 -0.56 -11.48 16 22 C 0.05 1.17 6.19 71.98 0.45 1.62 16 23 C -0.14 -2.23 10.29 71.98 0.74 -1.49 16 24 N -0.56 -26.50 8.92 -186.71 -1.67 -28.17 16 25 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 26 H 0.10 2.35 7.84 -2.91 -0.02 2.32 16 27 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 28 H 0.08 2.63 7.72 -2.39 -0.02 2.61 16 29 H 0.11 2.54 6.04 -2.39 -0.01 2.52 16 30 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 31 H 0.01 0.46 7.33 -2.38 -0.02 0.44 16 32 H 0.27 15.49 8.31 -92.72 -0.77 14.72 16 33 H 0.19 3.45 6.16 -2.91 -0.02 3.43 16 34 H 0.23 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -79.56 346.63 5.55 -74.01 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.05 Total: 8.57 kcal Atomic # 6 Polarization: 28.13 SS G_CDS: 7.81 Total: 35.94 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -5.11 Total: -130.80 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.22 Total: -35.73 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -79.56 5.55 -74.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596237411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.703 kcal (2) G-P(sol) polarization free energy of solvation -79.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds