Wall clock time and date at job start Tue Mar 31 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34749 * 117.00234 * 2 1 4 4 O 1.21508 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.47418 * 120.00151 * 180.02562 * 3 2 1 6 6 C 1.40171 * 120.87477 * 179.97438 * 5 3 2 7 7 N 1.31943 * 119.00190 * 179.97438 * 6 5 3 8 8 C 1.32679 * 120.90660 * 359.97438 * 7 6 5 9 9 N 1.37905 * 119.03150 * 180.02562 * 8 7 6 10 10 C 1.46849 * 110.99731 * 235.78835 * 9 8 7 11 11 C 1.53038 * 109.52473 * 185.83875 * 10 9 8 12 12 C 1.53114 * 109.27898 * 300.82527 * 11 10 9 13 13 C 1.53110 * 109.16448 * 57.65107 * 12 11 10 14 14 H 1.09005 * 109.53804 * 62.30470 * 13 12 11 15 15 C 1.50703 * 109.50514 * 182.40557 * 13 12 11 16 16 H 1.07997 * 119.99998 * 34.99397 * 15 13 12 17 17 C 1.37879 * 119.99844 * 214.99080 * 15 13 12 18 18 N 1.31517 * 119.99813 * 185.79955 * 17 15 13 19 19 Si 1.86799 * 120.00098 * 5.80139 * 17 15 13 20 20 H 1.48498 * 109.47408 * 84.78039 * 19 17 15 21 21 H 1.48501 * 109.46928 * 204.77815 * 19 17 15 22 22 H 1.48500 * 109.47285 * 324.77786 * 19 17 15 23 23 C 1.46842 * 111.00297 * 359.97438 * 9 8 7 24 24 N 1.32672 * 121.92897 * 0.02562 * 8 7 6 25 25 C 1.31947 * 120.90691 * 359.97438 * 24 8 7 26 26 H 1.09005 * 109.46936 * 300.00495 * 1 2 3 27 27 H 1.09001 * 109.47028 * 60.00346 * 1 2 3 28 28 H 1.08999 * 109.47323 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.49227 * 359.70345 * 6 5 3 30 30 H 1.09003 * 109.46486 * 305.85680 * 10 9 8 31 31 H 1.09004 * 109.46349 * 65.82235 * 10 9 8 32 32 H 1.09002 * 109.50215 * 180.87525 * 11 10 9 33 33 H 1.09005 * 109.53292 * 60.78412 * 11 10 9 34 34 H 1.09003 * 109.52215 * 297.74394 * 12 11 10 35 35 H 1.09001 * 109.52169 * 177.55733 * 12 11 10 36 36 H 0.96999 * 119.99985 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.46677 * 294.17464 * 23 9 8 38 38 H 1.08997 * 109.46418 * 54.16119 * 23 9 8 39 39 H 1.07999 * 120.49856 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5359 1.2777 -0.0006 6 6 4.1913 2.5168 -0.0011 7 7 5.5105 2.5427 -0.0011 8 6 6.2142 1.4179 -0.0001 9 7 7.5914 1.4902 0.0004 10 6 8.1577 0.7472 -1.1326 11 6 9.6837 0.7264 -1.0191 12 6 10.2098 2.1643 -1.0134 13 6 9.5679 2.9297 0.1469 14 1 9.8553 2.4680 1.0916 15 6 10.0352 4.3623 0.1244 16 1 10.2135 4.8574 -0.8187 17 6 10.2352 5.0409 1.3078 18 7 10.5320 6.3220 1.2892 19 14 10.0845 4.1407 2.9377 20 1 11.3745 3.4791 3.2589 21 1 9.7454 5.1109 4.0095 22 1 9.0137 3.1164 2.8403 23 6 8.0452 2.8867 -0.0009 24 7 5.6318 0.2259 0.0005 25 6 4.3171 0.1139 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.6249 3.4363 -0.0059 30 1 7.7788 -0.2748 -1.1226 31 1 7.8694 1.2320 -2.0653 32 1 10.1044 0.1882 -1.8685 33 1 9.9736 0.2291 -0.0935 34 1 9.9544 2.6494 -1.9555 35 1 11.2927 2.1554 -0.8891 36 1 10.6730 6.7993 2.1218 37 1 7.7576 3.3612 -0.9391 38 1 7.5848 3.4190 0.8314 39 1 3.8500 -0.8598 0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:09 Heat of formation + Delta-G solvation = -22.155773 kcal Electronic energy + Delta-G solvation = -23015.780926 eV Core-core repulsion = 19538.123876 eV Total energy + Delta-G solvation = -3477.657050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44794 -40.30275 -38.39780 -36.66860 -34.19300 -33.94029 -32.55371 -30.98943 -30.41854 -27.97263 -25.54104 -25.32483 -24.31588 -22.87226 -21.71321 -21.18899 -19.07806 -18.32242 -17.86128 -17.47408 -16.75334 -16.66642 -16.63210 -15.31988 -14.94847 -14.32240 -14.25920 -14.09169 -13.74223 -13.67310 -13.52452 -13.10154 -12.94078 -12.53029 -12.42297 -12.35148 -11.76058 -11.25236 -11.09656 -11.08744 -10.99688 -10.79795 -10.62220 -10.50709 -10.19710 -9.88772 -9.67234 -9.40796 -9.18527 -9.12308 -8.55856 -8.23848 -6.13020 -4.14029 0.30521 1.07071 2.31650 2.39601 3.25169 3.31363 3.37908 3.43111 3.69824 4.07666 4.38641 4.40025 4.52197 4.68590 4.81075 4.88333 4.89088 5.17066 5.22275 5.27638 5.30162 5.53016 5.62347 5.75907 5.91176 6.02630 6.12201 6.19652 6.26024 6.32978 6.54191 6.62636 6.64524 6.78471 6.94052 7.26710 7.35138 7.41846 7.47723 7.69979 8.10672 8.46984 8.92793 9.50172 10.99559 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.004028 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.221758 B = 6949.273154 C = 7680.944781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.529 3.471 4 O -0.509 6.509 5 C -0.296 4.296 6 C 0.249 3.751 7 N -0.547 5.547 8 C 0.530 3.470 9 N -0.458 5.458 10 C 0.073 3.927 11 C -0.122 4.122 12 C -0.110 4.110 13 C 0.017 3.983 14 H 0.040 0.960 15 C -0.513 4.513 16 H 0.075 0.925 17 C 0.076 3.924 18 N -0.895 5.895 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.262 1.262 23 C 0.073 3.927 24 N -0.544 5.544 25 C 0.236 3.764 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.180 0.820 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.265 0.735 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 -15.042 -3.927 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.274 6.274 3 C 0.373 3.627 4 O -0.398 6.398 5 C -0.305 4.305 6 C 0.078 3.922 7 N -0.267 5.267 8 C 0.177 3.823 9 N -0.174 5.174 10 C -0.052 4.052 11 C -0.159 4.159 12 C -0.148 4.148 13 C -0.003 4.003 14 H 0.059 0.941 15 C -0.551 4.551 16 H 0.093 0.907 17 C -0.127 4.127 18 N -0.532 5.532 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.186 1.186 23 C -0.052 4.052 24 N -0.263 5.263 25 C 0.065 3.935 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.197 0.803 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.123 -14.729 -3.402 20.688 hybrid contribution -1.561 0.025 0.580 1.666 sum -15.684 -14.704 -2.821 21.683 Atomic orbital electron populations 1.23281 0.75774 1.03765 1.02730 1.86522 1.23709 1.32599 1.84571 1.20569 0.88149 0.81521 0.72475 1.90853 1.66583 1.35901 1.46426 1.20586 0.91414 0.97828 1.20655 1.23388 0.89274 0.96935 0.82554 1.68769 1.07428 1.30704 1.19749 1.21674 0.91967 0.84160 0.84538 1.58341 0.99912 1.19244 1.39903 1.22172 0.96488 0.97971 0.88553 1.21744 0.92735 0.99455 1.02004 1.21699 1.00444 0.92640 0.99992 1.19276 0.89038 0.96849 0.95093 0.94146 1.20885 1.45053 0.94486 0.94660 0.90702 1.25082 0.94066 0.94544 0.99032 1.69907 1.47516 1.08052 1.27677 0.86892 0.79339 0.79951 0.83680 1.20063 1.21606 1.18629 1.22922 0.99238 0.80785 1.02289 1.68193 1.11604 1.26510 1.19985 1.23462 0.88007 0.98394 0.83634 0.91764 0.91760 0.87935 0.80320 0.89544 0.93676 0.91543 0.91264 0.92842 0.91873 0.92513 0.93004 0.90090 0.80281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.32 16 2 O -0.36 -3.47 9.91 -40.62 -0.40 -3.87 16 3 C 0.53 6.37 7.90 34.47 0.27 6.64 16 4 O -0.51 -7.22 16.22 -19.27 -0.31 -7.53 16 5 C -0.30 -3.76 5.90 -104.71 -0.62 -4.38 16 6 C 0.25 3.57 10.87 -16.78 -0.18 3.39 16 7 N -0.55 -9.57 8.62 -13.65 -0.12 -9.69 16 8 C 0.53 9.31 7.16 -323.06 -2.31 7.00 16 9 N -0.46 -8.57 4.70 -175.48 -0.83 -9.39 16 10 C 0.07 1.15 5.32 -3.83 -0.02 1.13 16 11 C -0.12 -1.86 6.09 -26.65 -0.16 -2.03 16 12 C -0.11 -2.07 5.27 -26.62 -0.14 -2.21 16 13 C 0.02 0.39 1.94 -91.69 -0.18 0.21 16 14 H 0.04 0.95 5.25 -51.93 -0.27 0.68 16 15 C -0.51 -13.87 8.86 -34.44 -0.31 -14.18 16 16 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 19 Si 0.87 21.52 27.01 -169.99 -4.59 16.93 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.26 -6.35 6.79 56.52 0.38 -5.97 16 23 C 0.07 1.55 3.88 -3.83 -0.01 1.54 16 24 N -0.54 -8.30 9.61 -13.65 -0.13 -8.43 16 25 C 0.24 2.86 10.90 -16.78 -0.18 2.68 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.18 2.24 7.74 -52.49 -0.41 1.83 16 30 H 0.09 1.23 7.53 -51.93 -0.39 0.84 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.05 1.12 8.09 -51.93 -0.42 0.70 16 38 H 0.08 1.90 7.67 -51.93 -0.40 1.50 16 39 H 0.18 1.54 7.70 -52.49 -0.40 1.13 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -31.87 326.65 -8.81 -40.68 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.25 Total: -0.68 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -2.88 Total: 3.15 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.30 Total: -53.60 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.72 Total: -11.40 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.59 Total: 16.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.87 -8.81 -40.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.525 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds