Wall clock time and date at job start Tue Mar 31 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34749 * 117.00234 * 2 1 4 4 O 1.21508 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.47418 * 120.00151 * 180.02562 * 3 2 1 6 6 C 1.40171 * 120.87477 * 179.97438 * 5 3 2 7 7 N 1.31943 * 119.00190 * 179.97438 * 6 5 3 8 8 C 1.32679 * 120.90660 * 359.97438 * 7 6 5 9 9 N 1.37905 * 119.03150 * 180.02562 * 8 7 6 10 10 C 1.46849 * 110.99731 * 235.78835 * 9 8 7 11 11 C 1.53038 * 109.52473 * 185.83875 * 10 9 8 12 12 C 1.53114 * 109.27898 * 300.82527 * 11 10 9 13 13 C 1.53110 * 109.16448 * 57.65107 * 12 11 10 14 14 H 1.09005 * 109.53804 * 62.30470 * 13 12 11 15 15 C 1.50703 * 109.50514 * 182.40557 * 13 12 11 16 16 H 1.07997 * 119.99998 * 34.99397 * 15 13 12 17 17 C 1.37879 * 119.99844 * 214.99080 * 15 13 12 18 18 N 1.31517 * 119.99813 * 185.79955 * 17 15 13 19 19 Si 1.86799 * 120.00098 * 5.80139 * 17 15 13 20 20 H 1.48498 * 109.47408 * 84.78039 * 19 17 15 21 21 H 1.48501 * 109.46928 * 204.77815 * 19 17 15 22 22 H 1.48500 * 109.47285 * 324.77786 * 19 17 15 23 23 C 1.46842 * 111.00297 * 359.97438 * 9 8 7 24 24 N 1.32672 * 121.92897 * 0.02562 * 8 7 6 25 25 C 1.31947 * 120.90691 * 359.97438 * 24 8 7 26 26 H 1.09005 * 109.46936 * 300.00495 * 1 2 3 27 27 H 1.09001 * 109.47028 * 60.00346 * 1 2 3 28 28 H 1.08999 * 109.47323 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.49227 * 359.70345 * 6 5 3 30 30 H 1.09003 * 109.46486 * 305.85680 * 10 9 8 31 31 H 1.09004 * 109.46349 * 65.82235 * 10 9 8 32 32 H 1.09002 * 109.50215 * 180.87525 * 11 10 9 33 33 H 1.09005 * 109.53292 * 60.78412 * 11 10 9 34 34 H 1.09003 * 109.52215 * 297.74394 * 12 11 10 35 35 H 1.09001 * 109.52169 * 177.55733 * 12 11 10 36 36 H 0.96999 * 119.99985 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.46677 * 294.17464 * 23 9 8 38 38 H 1.08997 * 109.46418 * 54.16119 * 23 9 8 39 39 H 1.07999 * 120.49856 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5359 1.2777 -0.0006 6 6 4.1913 2.5168 -0.0011 7 7 5.5105 2.5427 -0.0011 8 6 6.2142 1.4179 -0.0001 9 7 7.5914 1.4902 0.0004 10 6 8.1577 0.7472 -1.1326 11 6 9.6837 0.7264 -1.0191 12 6 10.2098 2.1643 -1.0134 13 6 9.5679 2.9297 0.1469 14 1 9.8553 2.4680 1.0916 15 6 10.0352 4.3623 0.1244 16 1 10.2135 4.8574 -0.8187 17 6 10.2352 5.0409 1.3078 18 7 10.5320 6.3220 1.2892 19 14 10.0845 4.1407 2.9377 20 1 11.3745 3.4791 3.2589 21 1 9.7454 5.1109 4.0095 22 1 9.0137 3.1164 2.8403 23 6 8.0452 2.8867 -0.0009 24 7 5.6318 0.2259 0.0005 25 6 4.3171 0.1139 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.6249 3.4363 -0.0059 30 1 7.7788 -0.2748 -1.1226 31 1 7.8694 1.2320 -2.0653 32 1 10.1044 0.1882 -1.8685 33 1 9.9736 0.2291 -0.0935 34 1 9.9544 2.6494 -1.9555 35 1 11.2927 2.1554 -0.8891 36 1 10.6730 6.7993 2.1218 37 1 7.7576 3.3612 -0.9391 38 1 7.5848 3.4190 0.8314 39 1 3.8500 -0.8598 0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:08 Heat of formation + Delta-G solvation = -41.704963 kcal Electronic energy + Delta-G solvation = -23016.628643 eV Core-core repulsion = 19538.123876 eV Total energy + Delta-G solvation = -3478.504767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.60796 -41.28295 -39.76973 -37.56582 -35.78694 -35.11841 -34.32653 -32.27240 -32.03631 -28.66612 -27.26381 -26.56115 -25.61147 -24.15223 -23.12379 -22.32218 -20.64319 -19.40616 -19.28328 -18.74677 -18.39481 -17.69581 -17.48228 -16.56869 -16.44311 -15.89040 -15.57703 -15.22846 -15.07097 -14.83583 -14.71861 -14.54711 -14.25343 -14.16974 -13.78603 -13.17075 -13.02334 -12.79675 -12.72783 -12.66825 -12.19020 -11.98142 -11.82234 -11.76189 -11.67771 -11.56410 -11.25470 -11.06590 -11.02925 -10.68344 -10.36185 -9.58065 -8.31878 -6.35867 -0.80885 -0.01710 1.30257 1.32300 1.35608 1.46196 1.55362 2.02670 2.32882 2.55835 2.92134 3.07563 3.35959 3.47706 3.58244 3.92560 3.98516 4.04274 4.14138 4.34296 4.38368 4.42464 4.50353 4.58561 4.69773 4.72771 4.76637 4.86896 4.97405 5.02412 5.04687 5.18791 5.22430 5.47532 5.55198 5.59026 5.65810 5.72847 6.09289 6.31412 6.56690 6.73121 6.90569 7.31400 8.84634 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.004028 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.221758 B = 6949.273154 C = 7680.944781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.536 3.464 4 O -0.533 6.533 5 C -0.284 4.284 6 C 0.239 3.761 7 N -0.582 5.582 8 C 0.514 3.486 9 N -0.469 5.469 10 C 0.072 3.928 11 C -0.111 4.111 12 C -0.107 4.107 13 C 0.015 3.985 14 H 0.036 0.964 15 C -0.512 4.512 16 H 0.037 0.963 17 C 0.020 3.980 18 N -0.944 5.944 19 Si 0.937 3.063 20 H -0.261 1.261 21 H -0.290 1.290 22 H -0.257 1.257 23 C 0.095 3.905 24 N -0.546 5.546 25 C 0.246 3.754 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.138 0.862 29 H 0.189 0.811 30 H 0.109 0.891 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.266 0.734 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.010 -18.714 -3.808 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.267 6.267 3 C 0.381 3.619 4 O -0.424 6.424 5 C -0.292 4.292 6 C 0.071 3.929 7 N -0.302 5.302 8 C 0.160 3.840 9 N -0.186 5.186 10 C -0.052 4.052 11 C -0.148 4.148 12 C -0.145 4.145 13 C -0.005 4.005 14 H 0.054 0.946 15 C -0.550 4.550 16 H 0.055 0.945 17 C -0.178 4.178 18 N -0.583 5.583 19 Si 0.762 3.238 20 H -0.185 1.185 21 H -0.217 1.217 22 H -0.181 1.181 23 C -0.032 4.032 24 N -0.265 5.265 25 C 0.077 3.923 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.156 0.844 29 H 0.206 0.794 30 H 0.127 0.873 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -15.845 -18.448 -3.298 24.542 hybrid contribution -1.243 1.133 0.434 1.737 sum -17.089 -17.315 -2.863 24.496 Atomic orbital electron populations 1.23636 0.73765 1.06126 1.02746 1.86508 1.25529 1.30831 1.83803 1.20374 0.87686 0.81928 0.71915 1.90855 1.66986 1.36959 1.47559 1.20659 0.92160 0.97410 1.18996 1.23592 0.88521 0.98363 0.82462 1.68699 1.08949 1.31501 1.21059 1.21629 0.91587 0.85030 0.85726 1.58315 1.01212 1.17244 1.41820 1.22319 0.96566 0.98637 0.87677 1.21693 0.92467 0.96803 1.03848 1.21601 1.00220 0.94820 0.97890 1.19233 0.90248 0.94385 0.96594 0.94621 1.21169 1.44100 0.96714 0.93048 0.94455 1.25872 0.94143 0.95113 1.02690 1.70045 1.49916 1.09790 1.28596 0.85886 0.79900 0.78758 0.79277 1.18547 1.21687 1.18086 1.22287 0.97805 0.82791 1.00324 1.68238 1.12913 1.25046 1.20276 1.24116 0.86845 0.99761 0.81588 0.91871 0.91717 0.84423 0.79421 0.87323 0.93683 0.87827 0.90947 0.93318 0.91944 0.92480 0.94437 0.92931 0.76134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.50 16 2 O -0.35 -5.60 9.91 -56.59 -0.56 -6.16 16 3 C 0.54 11.64 7.90 70.24 0.56 12.19 16 4 O -0.53 -14.29 16.22 19.81 0.32 -13.97 16 5 C -0.28 -6.61 5.90 -19.92 -0.12 -6.72 16 6 C 0.24 6.72 10.87 85.15 0.93 7.65 16 7 N -0.58 -20.38 8.62 -197.09 -1.70 -22.08 16 8 C 0.51 17.52 7.16 261.58 1.87 19.40 16 9 N -0.47 -17.11 4.70 -709.11 -3.34 -20.44 16 10 C 0.07 2.11 5.32 86.33 0.46 2.57 16 11 C -0.11 -3.09 6.09 30.65 0.19 -2.90 16 12 C -0.11 -3.98 5.27 30.67 0.16 -3.82 16 13 C 0.01 0.68 1.94 -11.49 -0.02 0.66 16 14 H 0.04 1.67 5.25 -2.38 -0.01 1.65 16 15 C -0.51 -28.82 8.86 25.60 0.23 -28.59 16 16 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 17 C 0.02 1.16 5.47 84.65 0.46 1.62 16 18 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 19 Si 0.94 45.32 27.01 68.60 1.85 47.18 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.26 -12.10 6.79 99.48 0.68 -11.43 16 23 C 0.09 4.11 3.88 86.33 0.34 4.45 16 24 N -0.55 -15.24 9.61 -197.09 -1.89 -17.13 16 25 C 0.25 5.17 10.90 85.15 0.93 6.10 16 26 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.19 4.72 7.74 -2.91 -0.02 4.70 16 30 H 0.11 2.72 7.53 -2.39 -0.02 2.70 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.04 1.69 8.09 -2.39 -0.02 1.67 16 38 H 0.05 2.55 7.67 -2.39 -0.02 2.53 16 39 H 0.22 2.69 7.70 -2.91 -0.02 2.67 16 Total: -1.00 -71.94 326.65 3.18 -68.76 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.03 Total: 8.43 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 7.17 Total: 14.09 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -6.63 Total: -118.32 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.24 Total: -20.13 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.85 Total: 47.18 kcal Total: -71.94 3.18 -68.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.054 kcal (2) G-P(sol) polarization free energy of solvation -71.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds