Wall clock time and date at job start Tue Mar 31 2020 06:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34726 * 117.00048 * 2 1 4 4 O 1.21470 * 119.99836 * 359.97438 * 3 2 1 5 5 C 1.47737 * 120.00252 * 180.02562 * 3 2 1 6 6 C 1.40109 * 120.10171 * 179.72041 * 5 3 2 7 7 C 1.38278 * 117.99653 * 180.27098 * 6 5 3 8 8 C 1.39607 * 118.02939 * 0.02562 * 7 6 5 9 9 N 1.38471 * 120.03915 * 180.02562 * 8 7 6 10 10 C 1.46846 * 111.00386 * 304.18619 * 9 8 7 11 11 C 1.53036 * 109.52370 * 174.16083 * 10 9 8 12 12 C 1.53116 * 109.27646 * 59.18077 * 11 10 9 13 13 C 1.53120 * 109.16417 * 302.34357 * 12 11 10 14 14 H 1.08996 * 109.50073 * 297.71232 * 13 12 11 15 15 C 1.50696 * 109.53532 * 177.61441 * 13 12 11 16 16 H 1.08003 * 120.00516 * 0.18169 * 15 13 12 17 17 C 1.37881 * 119.99808 * 180.17577 * 15 13 12 18 18 N 1.31508 * 120.00016 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99883 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47041 * 60.00094 * 19 17 15 21 21 H 1.48500 * 109.47047 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47192 * 300.00216 * 19 17 15 23 23 C 1.46847 * 110.99600 * 179.97438 * 9 8 7 24 24 N 1.32874 * 119.91384 * 359.97438 * 8 7 6 25 25 N 1.28356 * 122.16510 * 0.02562 * 24 8 7 26 26 H 1.08996 * 109.47383 * 300.00339 * 1 2 3 27 27 H 1.09000 * 109.46762 * 60.00451 * 1 2 3 28 28 H 1.09002 * 109.47059 * 180.02562 * 1 2 3 29 29 H 1.08004 * 121.00244 * 0.25322 * 6 5 3 30 30 H 1.07999 * 120.98041 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.46208 * 294.17983 * 10 9 8 32 32 H 1.08998 * 109.46243 * 54.14787 * 10 9 8 33 33 H 1.08995 * 109.50461 * 299.23918 * 11 10 9 34 34 H 1.09000 * 109.50150 * 179.11856 * 11 10 9 35 35 H 1.09001 * 109.52162 * 182.43694 * 12 11 10 36 36 H 1.09000 * 109.57493 * 62.28346 * 12 11 10 37 37 H 0.97006 * 120.00211 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.46934 * 305.85609 * 23 9 8 39 39 H 1.09004 * 109.46327 * 65.84092 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5390 1.2778 -0.0006 6 6 4.1772 2.5250 -0.0065 7 6 5.5598 2.5467 -0.0126 8 6 6.2351 1.3248 -0.0130 9 7 7.6195 1.2978 -0.0184 10 6 8.1562 2.0557 -1.1560 11 6 9.6812 2.1269 -1.0492 12 6 10.2543 0.7071 -1.0418 13 6 9.6428 -0.0757 0.1235 14 1 9.9191 0.3986 1.0651 15 6 10.1568 -1.4922 0.1038 16 1 10.8528 -1.8036 -0.6612 17 6 9.7387 -2.3907 1.0624 18 7 8.8909 -2.0116 1.9936 19 14 10.3763 -4.1463 1.0384 20 1 11.8549 -4.1378 1.1754 21 1 9.7786 -4.9055 2.1661 22 1 10.0019 -4.7914 -0.2456 23 6 8.1189 -0.0831 -0.0172 24 7 5.5475 0.1877 -0.0071 25 7 4.2642 0.1652 -0.0015 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.6065 3.4420 -0.0066 30 1 6.1012 3.4812 -0.0177 31 1 7.8800 1.5589 -2.0860 32 1 7.7440 3.0646 -1.1471 33 1 9.9580 2.6359 -0.1260 34 1 10.0804 2.6760 -1.9020 35 1 11.3368 0.7519 -0.9224 36 1 10.0118 0.2105 -1.9814 37 1 8.5970 -2.6436 2.6683 38 1 7.6797 -0.6275 0.8187 39 1 7.8432 -0.5699 -0.9528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596331570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:44 Heat of formation + Delta-G solvation = -15.712207 kcal Electronic energy + Delta-G solvation = -23090.120134 eV Core-core repulsion = 19612.742497 eV Total energy + Delta-G solvation = -3477.377636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23425 -40.15953 -38.35417 -36.58591 -34.35491 -33.12491 -32.66879 -30.62919 -29.77529 -27.89049 -25.59174 -25.09421 -24.47845 -22.49991 -21.86524 -21.21411 -19.05591 -18.44884 -17.46823 -17.14312 -16.62803 -16.53677 -15.98796 -15.04433 -14.66715 -14.55174 -14.24892 -14.06294 -13.60052 -13.41569 -13.24504 -13.04733 -12.79635 -12.42924 -12.26262 -12.01644 -11.57136 -10.99181 -10.92431 -10.91550 -10.72855 -10.57122 -10.45536 -10.36815 -10.28968 -10.11465 -9.66403 -9.50602 -9.09796 -8.98659 -8.40023 -7.95975 -6.02165 -4.09961 0.48764 0.91882 2.32265 2.47825 3.32882 3.39043 3.40215 3.58276 3.81840 4.18732 4.42799 4.56730 4.72925 4.83612 4.95581 4.96942 5.03949 5.22278 5.29927 5.33766 5.35724 5.58313 5.60787 5.75162 5.85295 5.97592 6.14247 6.16847 6.26046 6.49494 6.58497 6.73344 6.83567 6.97454 7.25650 7.51494 7.55379 7.70111 7.89515 8.04679 8.37536 8.83551 8.94077 9.56322 11.03819 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.004370 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.991130 B = 6405.971520 C = 7797.729369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.334 6.334 3 C 0.540 3.460 4 O -0.508 6.508 5 C -0.026 4.026 6 C -0.042 4.042 7 C -0.154 4.154 8 C 0.298 3.702 9 N -0.464 5.464 10 C 0.063 3.937 11 C -0.117 4.117 12 C -0.116 4.116 13 C 0.052 3.948 14 H 0.035 0.965 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.062 3.938 24 N -0.265 5.265 25 N -0.150 5.150 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.264 0.736 38 H 0.125 0.875 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 9.741 -5.219 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.248 6.248 3 C 0.383 3.617 4 O -0.395 6.395 5 C -0.173 4.173 6 C -0.070 4.070 7 C -0.185 4.185 8 C 0.060 3.940 9 N -0.179 5.179 10 C -0.062 4.062 11 C -0.155 4.155 12 C -0.154 4.154 13 C 0.033 3.967 14 H 0.053 0.947 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.062 4.062 24 N -0.117 5.117 25 N 0.001 4.999 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.176 0.824 30 H 0.175 0.825 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.348 8.562 -4.640 14.210 hybrid contribution -0.198 0.322 -0.369 0.528 sum -10.545 8.885 -5.009 14.671 Atomic orbital electron populations 1.23340 0.76095 1.04014 1.02477 1.86714 1.23190 1.31586 1.83315 1.20376 0.87404 0.81732 0.72237 1.90832 1.65969 1.36122 1.46580 1.21351 0.92322 0.92761 1.10843 1.22071 0.94381 0.98201 0.92359 1.21947 0.93852 0.99255 1.03466 1.22021 0.92730 0.90823 0.88409 1.58893 1.00102 1.20746 1.38170 1.22250 0.97156 0.96935 0.89865 1.21659 0.92689 0.99477 1.01639 1.21751 0.99742 0.93309 1.00609 1.18755 0.89308 0.95130 0.93509 0.94677 1.21043 1.27064 0.95035 1.12832 0.92407 1.24996 0.94796 0.98750 0.95154 1.69816 1.31767 1.35299 1.15214 0.86640 0.79000 0.84609 0.77676 1.20306 1.21222 1.20198 1.22796 0.99290 0.80843 1.03267 1.73795 0.99318 1.23628 1.14992 1.73323 1.00288 1.24755 1.01574 0.91781 0.91816 0.87754 0.82400 0.82478 0.93578 0.90978 0.91283 0.92023 0.92651 0.93260 0.92615 0.85696 0.94849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.33 -4.68 10.39 -40.56 -0.42 -5.11 16 3 C 0.54 8.07 7.94 34.61 0.27 8.35 16 4 O -0.51 -7.73 16.17 -19.24 -0.31 -8.04 16 5 C -0.03 -0.42 6.83 -82.86 -0.57 -0.98 16 6 C -0.04 -0.56 9.71 -38.86 -0.38 -0.94 16 7 C -0.15 -2.12 9.26 -39.06 -0.36 -2.48 16 8 C 0.30 5.40 6.47 -154.95 -1.00 4.40 16 9 N -0.46 -8.84 4.67 -173.12 -0.81 -9.65 16 10 C 0.06 0.96 5.25 -3.84 -0.02 0.94 16 11 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16 12 C -0.12 -2.23 5.23 -26.61 -0.14 -2.37 16 13 C 0.05 1.24 2.26 -91.69 -0.21 1.03 16 14 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.52 -13.86 8.57 -34.44 -0.30 -14.16 16 16 H 0.06 1.51 7.75 -52.48 -0.41 1.10 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 18 N -0.88 -25.05 11.33 55.43 0.63 -24.42 16 19 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.06 1.44 3.70 -3.83 -0.01 1.43 16 24 N -0.26 -5.46 9.86 31.21 0.31 -5.16 16 25 N -0.15 -2.86 11.30 33.30 0.38 -2.48 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.16 1.63 7.71 -52.48 -0.40 1.23 16 30 H 0.16 1.64 7.20 -52.49 -0.38 1.26 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.86 6.71 -51.93 -0.35 0.51 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.13 3.37 5.66 -51.93 -0.29 3.07 16 39 H 0.03 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -30.70 326.47 -7.42 -38.12 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.19 Total: -0.63 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.90 Total: -3.64 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.50 Total: -41.71 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.73 Total: -13.15 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.70 -7.42 -38.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596331570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.404 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds