Wall clock time and date at job start Tue Mar 31 2020 06:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34726 * 117.00048 * 2 1 4 4 O 1.21470 * 119.99836 * 359.97438 * 3 2 1 5 5 C 1.47737 * 120.00252 * 180.02562 * 3 2 1 6 6 C 1.40109 * 120.10171 * 179.72041 * 5 3 2 7 7 C 1.38278 * 117.99653 * 180.27098 * 6 5 3 8 8 C 1.39607 * 118.02939 * 0.02562 * 7 6 5 9 9 N 1.38471 * 120.03915 * 180.02562 * 8 7 6 10 10 C 1.46846 * 111.00386 * 304.18619 * 9 8 7 11 11 C 1.53036 * 109.52370 * 174.16083 * 10 9 8 12 12 C 1.53116 * 109.27646 * 59.18077 * 11 10 9 13 13 C 1.53120 * 109.16417 * 302.34357 * 12 11 10 14 14 H 1.08996 * 109.50073 * 297.71232 * 13 12 11 15 15 C 1.50696 * 109.53532 * 177.61441 * 13 12 11 16 16 H 1.08003 * 120.00516 * 0.18169 * 15 13 12 17 17 C 1.37881 * 119.99808 * 180.17577 * 15 13 12 18 18 N 1.31508 * 120.00016 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99883 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47041 * 60.00094 * 19 17 15 21 21 H 1.48500 * 109.47047 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47192 * 300.00216 * 19 17 15 23 23 C 1.46847 * 110.99600 * 179.97438 * 9 8 7 24 24 N 1.32874 * 119.91384 * 359.97438 * 8 7 6 25 25 N 1.28356 * 122.16510 * 0.02562 * 24 8 7 26 26 H 1.08996 * 109.47383 * 300.00339 * 1 2 3 27 27 H 1.09000 * 109.46762 * 60.00451 * 1 2 3 28 28 H 1.09002 * 109.47059 * 180.02562 * 1 2 3 29 29 H 1.08004 * 121.00244 * 0.25322 * 6 5 3 30 30 H 1.07999 * 120.98041 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.46208 * 294.17983 * 10 9 8 32 32 H 1.08998 * 109.46243 * 54.14787 * 10 9 8 33 33 H 1.08995 * 109.50461 * 299.23918 * 11 10 9 34 34 H 1.09000 * 109.50150 * 179.11856 * 11 10 9 35 35 H 1.09001 * 109.52162 * 182.43694 * 12 11 10 36 36 H 1.09000 * 109.57493 * 62.28346 * 12 11 10 37 37 H 0.97006 * 120.00211 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.46934 * 305.85609 * 23 9 8 39 39 H 1.09004 * 109.46327 * 65.84092 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5390 1.2778 -0.0006 6 6 4.1772 2.5250 -0.0065 7 6 5.5598 2.5467 -0.0126 8 6 6.2351 1.3248 -0.0130 9 7 7.6195 1.2978 -0.0184 10 6 8.1562 2.0557 -1.1560 11 6 9.6812 2.1269 -1.0492 12 6 10.2543 0.7071 -1.0418 13 6 9.6428 -0.0757 0.1235 14 1 9.9191 0.3986 1.0651 15 6 10.1568 -1.4922 0.1038 16 1 10.8528 -1.8036 -0.6612 17 6 9.7387 -2.3907 1.0624 18 7 8.8909 -2.0116 1.9936 19 14 10.3763 -4.1463 1.0384 20 1 11.8549 -4.1378 1.1754 21 1 9.7786 -4.9055 2.1661 22 1 10.0019 -4.7914 -0.2456 23 6 8.1189 -0.0831 -0.0172 24 7 5.5475 0.1877 -0.0071 25 7 4.2642 0.1652 -0.0015 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.6065 3.4420 -0.0066 30 1 6.1012 3.4812 -0.0177 31 1 7.8800 1.5589 -2.0860 32 1 7.7440 3.0646 -1.1471 33 1 9.9580 2.6359 -0.1260 34 1 10.0804 2.6760 -1.9020 35 1 11.3368 0.7519 -0.9224 36 1 10.0118 0.2105 -1.9814 37 1 8.5970 -2.6436 2.6683 38 1 7.6797 -0.6275 0.8187 39 1 7.8432 -0.5699 -0.9528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596331570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:43 Heat of formation + Delta-G solvation = -35.510074 kcal Electronic energy + Delta-G solvation = -23090.978634 eV Core-core repulsion = 19612.742497 eV Total energy + Delta-G solvation = -3478.236136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.50033 -41.32004 -39.78570 -37.67990 -35.98492 -34.44257 -34.29253 -31.96287 -31.46189 -28.79740 -27.27429 -26.43264 -25.95551 -23.84900 -23.31940 -22.49258 -20.59781 -19.65882 -18.85964 -18.50119 -17.87735 -17.75025 -17.61103 -16.49711 -16.35611 -15.81057 -15.55607 -15.26333 -14.87262 -14.77015 -14.54377 -14.29899 -14.18304 -14.04515 -13.61132 -13.15339 -12.88519 -12.78387 -12.61698 -12.28177 -12.21326 -11.92914 -11.86547 -11.79981 -11.76198 -11.40596 -11.29111 -10.97400 -10.84963 -10.67693 -10.42666 -9.41745 -8.09775 -6.24534 -0.73086 -0.24631 1.13486 1.41664 1.43649 1.44871 1.50864 2.30987 2.43602 2.53207 2.96141 3.20256 3.38840 3.66650 3.68967 3.85751 4.02522 4.10202 4.24745 4.32334 4.33350 4.41529 4.50953 4.65490 4.70720 4.75794 4.84371 4.87070 4.94809 5.05319 5.10432 5.23186 5.29004 5.33896 5.60517 5.72435 5.95248 6.04623 6.13830 6.38252 6.44621 6.87477 7.45070 7.54400 8.93938 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.004370 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.991130 B = 6405.971520 C = 7797.729369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.542 3.458 4 O -0.510 6.510 5 C -0.027 4.027 6 C -0.030 4.030 7 C -0.129 4.129 8 C 0.275 3.725 9 N -0.472 5.472 10 C 0.058 3.942 11 C -0.108 4.108 12 C -0.113 4.113 13 C 0.048 3.952 14 H 0.003 0.997 15 C -0.539 4.539 16 H 0.057 0.943 17 C 0.016 3.984 18 N -0.912 5.912 19 Si 0.951 3.049 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.087 3.913 24 N -0.317 5.317 25 N -0.187 5.187 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.129 0.871 29 H 0.198 0.802 30 H 0.203 0.797 31 H 0.042 0.958 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.260 0.740 38 H 0.082 0.918 39 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 12.221 -6.322 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.385 3.615 4 O -0.398 6.398 5 C -0.175 4.175 6 C -0.057 4.057 7 C -0.160 4.160 8 C 0.037 3.963 9 N -0.187 5.187 10 C -0.066 4.066 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.029 3.971 14 H 0.021 0.979 15 C -0.578 4.578 16 H 0.075 0.925 17 C -0.183 4.183 18 N -0.551 5.551 19 Si 0.777 3.223 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.039 4.039 24 N -0.168 5.168 25 N -0.035 5.035 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.215 0.785 30 H 0.220 0.780 31 H 0.060 0.940 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -11.031 11.032 -5.758 16.630 hybrid contribution -0.140 -0.413 -0.040 0.438 sum -11.171 10.619 -5.797 16.468 Atomic orbital electron populations 1.23708 0.73553 1.06076 1.03301 1.86698 1.25791 1.31283 1.82886 1.20229 0.87046 0.82022 0.72222 1.90821 1.65900 1.36144 1.46888 1.21813 0.93003 0.93398 1.09307 1.22494 0.94334 0.98382 0.90511 1.22335 0.93978 0.98938 1.00789 1.22258 0.92345 0.92102 0.89616 1.58922 1.01043 1.18290 1.40463 1.22507 0.97149 0.98632 0.88348 1.21631 0.92666 0.96756 1.03523 1.21646 0.99756 0.95540 0.98089 1.18701 0.90166 0.94246 0.93983 0.97932 1.21504 1.26876 0.96833 1.12543 0.92478 1.25760 0.95063 1.02514 0.95012 1.69993 1.32987 1.36230 1.15867 0.85714 0.78862 0.80192 0.77544 1.19184 1.21285 1.19814 1.22094 0.98433 0.83354 1.00046 1.73645 1.00295 1.25940 1.16918 1.73220 0.99999 1.26631 1.03616 0.91061 0.90846 0.85243 0.78510 0.78017 0.93968 0.86257 0.91156 0.87925 0.92470 0.93574 0.93118 0.89984 0.97266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.35 -9.64 10.39 -56.36 -0.59 -10.23 16 3 C 0.54 15.52 7.94 70.33 0.56 16.08 16 4 O -0.51 -14.33 16.17 19.93 0.32 -14.00 16 5 C -0.03 -0.83 6.83 41.96 0.29 -0.54 16 6 C -0.03 -0.69 9.71 22.73 0.22 -0.47 16 7 C -0.13 -3.14 9.26 22.61 0.21 -2.93 16 8 C 0.27 9.84 6.47 133.22 0.86 10.70 16 9 N -0.47 -17.85 4.67 -701.62 -3.28 -21.13 16 10 C 0.06 1.61 5.25 86.33 0.45 2.06 16 11 C -0.11 -3.02 6.09 30.65 0.19 -2.83 16 12 C -0.11 -4.28 5.23 30.67 0.16 -4.12 16 13 C 0.05 2.37 2.26 -11.49 -0.03 2.35 16 14 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 15 C -0.54 -29.75 8.57 25.60 0.22 -29.53 16 16 H 0.06 3.06 7.75 -2.91 -0.02 3.04 16 17 C 0.02 0.91 5.30 84.66 0.45 1.36 16 18 N -0.91 -54.37 11.33 21.45 0.24 -54.13 16 19 Si 0.95 44.53 29.54 68.60 2.03 46.55 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 23 C 0.09 4.23 3.70 86.33 0.32 4.55 16 24 N -0.32 -13.58 9.86 -55.18 -0.54 -14.12 16 25 N -0.19 -7.32 11.30 -48.54 -0.55 -7.87 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.20 3.07 7.71 -2.91 -0.02 3.05 16 30 H 0.20 3.00 7.20 -2.91 -0.02 2.98 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.12 2.21 6.71 -2.39 -0.02 2.20 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 38 H 0.08 4.73 5.66 -2.39 -0.01 4.71 16 39 H 0.01 0.47 8.12 -2.38 -0.02 0.45 16 Total: -1.00 -72.65 326.47 3.79 -68.86 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.06 Total: 7.75 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 5.10 Total: -1.68 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -4.13 Total: -97.25 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.26 Total: -24.23 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -72.65 3.79 -68.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596331570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.346 kcal (2) G-P(sol) polarization free energy of solvation -72.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds