Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47314 * 2 1 4 4 C 1.46499 * 119.99969 * 274.24850 * 3 2 1 5 5 C 1.50708 * 109.46882 * 269.99736 * 4 3 2 6 6 H 1.08005 * 119.99912 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00283 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99637 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00234 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47251 * 90.00584 * 9 7 5 11 11 H 1.48505 * 109.47024 * 210.00319 * 9 7 5 12 12 H 1.48504 * 109.47167 * 330.00104 * 9 7 5 13 13 C 1.34785 * 119.99931 * 94.24704 * 3 2 1 14 14 O 1.21277 * 119.99725 * 184.65665 * 13 3 2 15 15 C 1.50699 * 119.99988 * 4.65415 * 13 3 2 16 16 H 1.08997 * 110.27029 * 326.84641 * 15 13 3 17 17 C 1.54343 * 110.29852 * 89.02147 * 15 13 3 18 18 C 1.54347 * 102.39445 * 92.57114 * 17 15 13 19 19 C 1.51373 * 105.16832 * 26.34912 * 18 17 15 20 20 C 1.38464 * 130.36388 * 162.80729 * 19 18 17 21 21 C 1.38325 * 120.19598 * 179.97438 * 20 19 18 22 22 F 1.35096 * 120.06219 * 180.02562 * 21 20 19 23 23 C 1.38481 * 119.87805 * 359.69341 * 21 20 19 24 24 C 1.38060 * 119.90740 * 0.60439 * 23 21 20 25 25 C 1.38227 * 109.75954 * 342.80899 * 19 18 17 26 26 H 1.09002 * 109.47531 * 175.02383 * 1 2 3 27 27 H 1.09007 * 109.47300 * 295.02792 * 1 2 3 28 28 H 1.09000 * 109.47056 * 55.03060 * 1 2 3 29 29 H 1.09002 * 109.47184 * 239.99265 * 2 1 3 30 30 H 1.09005 * 109.46843 * 120.00232 * 2 1 3 31 31 H 1.08998 * 109.47195 * 29.99821 * 4 3 2 32 32 H 1.08999 * 109.47241 * 150.00057 * 4 3 2 33 33 H 0.97004 * 119.99924 * 179.97438 * 8 7 5 34 34 H 1.09000 * 110.81716 * 210.79010 * 17 15 13 35 35 H 1.08999 * 110.82802 * 334.13898 * 17 15 13 36 36 H 1.09000 * 110.30607 * 145.27644 * 18 17 15 37 37 H 1.08999 * 110.29552 * 267.33045 * 18 17 15 38 38 H 1.07999 * 119.90020 * 359.97438 * 20 19 18 39 39 H 1.08004 * 120.04390 * 180.28401 * 23 21 20 40 40 H 1.08003 * 119.87284 * 179.68537 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1739 2.1031 -1.2652 5 6 3.5633 1.8783 -1.8043 6 1 4.2604 1.2592 -1.2591 7 6 3.9440 2.4620 -2.9939 8 7 3.0949 3.2155 -3.6580 9 14 5.6658 2.1828 -3.6624 10 1 5.6686 0.9829 -4.5373 11 1 6.0901 3.3693 -4.4481 12 1 6.6074 1.9743 -2.5331 13 6 2.3245 1.9877 1.1641 14 8 2.6478 3.1566 1.1721 15 6 2.2651 1.2134 2.4556 16 1 1.4707 0.4684 2.4130 17 6 3.6231 0.5359 2.7366 18 6 4.3436 1.5867 3.6079 19 6 3.2366 2.3674 4.2835 20 6 3.2721 3.1992 5.3899 21 6 2.1165 3.8163 5.8338 22 9 2.1544 4.6277 6.9132 23 6 0.9219 3.6062 5.1655 24 6 0.8856 2.7719 4.0661 25 6 2.0423 2.1529 3.6214 26 1 -0.3634 -1.0238 -0.0891 27 1 -0.3634 0.4348 0.9312 28 1 -0.3633 0.5890 -0.8421 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.4414 1.7373 -1.9847 32 1 2.0175 3.1686 -1.0972 33 1 3.3629 3.6265 -4.4948 34 1 3.4851 -0.3948 3.2870 35 1 4.1671 0.3584 1.8089 36 1 4.9692 1.0955 4.3531 37 1 4.9468 2.2460 2.9837 38 1 4.2050 3.3666 5.9077 39 1 0.0189 4.0903 5.5071 40 1 -0.0473 2.6045 3.5485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596891432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = -60.963357 kcal Electronic energy + Delta-G solvation = -23372.786177 eV Core-core repulsion = 19873.526342 eV Total energy + Delta-G solvation = -3499.259835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.86708 -40.56450 -38.44910 -35.38555 -35.10132 -32.80702 -31.49331 -30.10295 -28.82104 -28.21115 -26.56023 -23.24522 -23.08611 -22.82630 -21.10832 -21.00098 -18.35550 -17.08608 -16.82362 -16.43537 -16.33292 -15.82988 -15.55129 -15.03112 -14.78519 -14.39596 -14.01911 -13.70120 -13.53587 -13.38663 -12.95502 -12.83296 -12.48492 -12.15885 -12.10299 -11.84980 -11.71172 -11.51699 -11.23515 -11.14356 -10.94912 -10.88891 -10.79569 -10.75558 -10.51494 -10.14893 -9.65017 -9.00264 -8.87553 -8.45273 -8.29429 -7.66918 -6.06009 -4.11035 1.18641 1.27552 3.27989 3.32868 3.35816 3.40069 3.53386 3.98701 4.12601 4.41914 4.44642 4.57896 4.91172 4.96197 5.06044 5.14447 5.25329 5.27081 5.29520 5.38563 5.59279 5.61722 5.66119 5.75982 5.78629 5.85809 5.96317 6.03242 6.10822 6.11512 6.19951 6.22710 6.31950 6.48417 6.61072 6.92159 7.06977 7.44691 7.53811 7.90568 8.21762 8.41302 8.88221 9.08469 9.54261 11.02044 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.004410 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.282308 B = 6347.666331 C = 6816.561872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.517 3.483 14 O -0.533 6.533 15 C -0.076 4.076 16 H 0.099 0.901 17 C -0.107 4.107 18 C -0.082 4.082 19 C -0.052 4.052 20 C -0.145 4.145 21 C 0.095 3.905 22 F -0.143 7.143 23 C -0.156 4.156 24 C -0.069 4.069 25 C -0.076 4.076 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 -7.418 15.791 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.328 5.328 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.302 3.698 14 O -0.409 6.409 15 C -0.097 4.097 16 H 0.117 0.883 17 C -0.144 4.144 18 C -0.118 4.118 19 C -0.052 4.052 20 C -0.164 4.164 21 C 0.076 3.924 22 F -0.122 7.122 23 C -0.175 4.175 24 C -0.087 4.087 25 C -0.077 4.077 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.585 -6.640 15.626 17.352 hybrid contribution 0.823 0.091 -0.372 0.908 sum -2.762 -6.549 15.253 16.828 Atomic orbital electron populations 1.22217 0.96786 1.01563 1.02229 1.21459 0.93613 0.84336 1.02656 1.48238 1.63342 1.13364 1.07864 1.19264 0.96676 0.93204 0.78163 1.21425 0.98330 1.30759 1.06028 0.92490 1.24932 0.97513 0.94910 0.96714 1.69935 1.35117 1.32213 1.16031 0.86515 0.84438 0.77663 0.78909 1.20632 1.21101 1.19905 1.19960 0.78236 0.87335 0.84255 1.90680 1.47345 1.16329 1.86575 1.20917 1.00075 0.96730 0.92010 0.88276 1.22241 0.93784 0.97590 1.00817 1.21086 0.95961 0.96675 0.98113 1.20354 0.95821 0.95614 0.93387 1.20450 0.97604 0.99775 0.98545 1.17453 0.94868 0.93641 0.86453 1.91473 1.97285 1.70780 1.52661 1.20923 0.97125 1.01734 0.97668 1.20421 0.97999 0.95162 0.95128 1.20159 0.93564 0.98457 0.95530 0.92143 0.93176 0.91911 0.90071 0.91440 0.95040 0.93864 0.92714 0.90068 0.89435 0.90317 0.89060 0.85085 0.84753 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.21 37.16 0.38 -1.82 16 2 C 0.10 1.58 5.79 -4.04 -0.02 1.55 16 3 N -0.60 -12.15 2.46 -175.06 -0.43 -12.58 16 4 C 0.25 6.32 5.22 -5.19 -0.03 6.29 16 5 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 9 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.52 10.44 6.69 -10.98 -0.07 10.36 16 14 O -0.53 -13.34 15.87 5.56 0.09 -13.25 16 15 C -0.08 -1.12 2.33 -91.89 -0.21 -1.33 16 16 H 0.10 1.21 6.39 -51.93 -0.33 0.88 16 17 C -0.11 -1.35 6.33 -25.32 -0.16 -1.51 16 18 C -0.08 -1.06 6.76 -26.85 -0.18 -1.24 16 19 C -0.05 -0.74 6.14 -104.21 -0.64 -1.38 16 20 C -0.14 -1.96 10.02 -39.47 -0.40 -2.35 16 21 C 0.09 1.30 7.30 -39.46 -0.29 1.01 16 22 F -0.14 -1.94 17.27 2.25 0.04 -1.91 16 23 C -0.16 -2.01 10.03 -39.56 -0.40 -2.41 16 24 C -0.07 -0.94 10.04 -39.54 -0.40 -1.34 16 25 C -0.08 -1.14 4.87 -104.19 -0.51 -1.65 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.61 7.98 -51.93 -0.41 0.19 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 30 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.27 7.36 -51.93 -0.38 0.89 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.22 7.89 -51.93 -0.41 0.81 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -32.89 339.02 -8.44 -41.33 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.61 Total: -0.47 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -3.34 Total: -9.11 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.31 Total: -38.24 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.89 -8.44 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.635 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds