Wall clock time and date at job start Tue Mar 31 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47314 * 2 1 4 4 C 1.46499 * 119.99969 * 274.24850 * 3 2 1 5 5 C 1.50708 * 109.46882 * 269.99736 * 4 3 2 6 6 H 1.08005 * 119.99912 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00283 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99637 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00234 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47251 * 90.00584 * 9 7 5 11 11 H 1.48505 * 109.47024 * 210.00319 * 9 7 5 12 12 H 1.48504 * 109.47167 * 330.00104 * 9 7 5 13 13 C 1.34785 * 119.99931 * 94.24704 * 3 2 1 14 14 O 1.21277 * 119.99725 * 184.65665 * 13 3 2 15 15 C 1.50699 * 119.99988 * 4.65415 * 13 3 2 16 16 H 1.08997 * 110.27029 * 326.84641 * 15 13 3 17 17 C 1.54343 * 110.29852 * 89.02147 * 15 13 3 18 18 C 1.54347 * 102.39445 * 92.57114 * 17 15 13 19 19 C 1.51373 * 105.16832 * 26.34912 * 18 17 15 20 20 C 1.38464 * 130.36388 * 162.80729 * 19 18 17 21 21 C 1.38325 * 120.19598 * 179.97438 * 20 19 18 22 22 F 1.35096 * 120.06219 * 180.02562 * 21 20 19 23 23 C 1.38481 * 119.87805 * 359.69341 * 21 20 19 24 24 C 1.38060 * 119.90740 * 0.60439 * 23 21 20 25 25 C 1.38227 * 109.75954 * 342.80899 * 19 18 17 26 26 H 1.09002 * 109.47531 * 175.02383 * 1 2 3 27 27 H 1.09007 * 109.47300 * 295.02792 * 1 2 3 28 28 H 1.09000 * 109.47056 * 55.03060 * 1 2 3 29 29 H 1.09002 * 109.47184 * 239.99265 * 2 1 3 30 30 H 1.09005 * 109.46843 * 120.00232 * 2 1 3 31 31 H 1.08998 * 109.47195 * 29.99821 * 4 3 2 32 32 H 1.08999 * 109.47241 * 150.00057 * 4 3 2 33 33 H 0.97004 * 119.99924 * 179.97438 * 8 7 5 34 34 H 1.09000 * 110.81716 * 210.79010 * 17 15 13 35 35 H 1.08999 * 110.82802 * 334.13898 * 17 15 13 36 36 H 1.09000 * 110.30607 * 145.27644 * 18 17 15 37 37 H 1.08999 * 110.29552 * 267.33045 * 18 17 15 38 38 H 1.07999 * 119.90020 * 359.97438 * 20 19 18 39 39 H 1.08004 * 120.04390 * 180.28401 * 23 21 20 40 40 H 1.08003 * 119.87284 * 179.68537 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1739 2.1031 -1.2652 5 6 3.5633 1.8783 -1.8043 6 1 4.2604 1.2592 -1.2591 7 6 3.9440 2.4620 -2.9939 8 7 3.0949 3.2155 -3.6580 9 14 5.6658 2.1828 -3.6624 10 1 5.6686 0.9829 -4.5373 11 1 6.0901 3.3693 -4.4481 12 1 6.6074 1.9743 -2.5331 13 6 2.3245 1.9877 1.1641 14 8 2.6478 3.1566 1.1721 15 6 2.2651 1.2134 2.4556 16 1 1.4707 0.4684 2.4130 17 6 3.6231 0.5359 2.7366 18 6 4.3436 1.5867 3.6079 19 6 3.2366 2.3674 4.2835 20 6 3.2721 3.1992 5.3899 21 6 2.1165 3.8163 5.8338 22 9 2.1544 4.6277 6.9132 23 6 0.9219 3.6062 5.1655 24 6 0.8856 2.7719 4.0661 25 6 2.0423 2.1529 3.6214 26 1 -0.3634 -1.0238 -0.0891 27 1 -0.3634 0.4348 0.9312 28 1 -0.3633 0.5890 -0.8421 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.4414 1.7373 -1.9847 32 1 2.0175 3.1686 -1.0972 33 1 3.3629 3.6265 -4.4948 34 1 3.4851 -0.3948 3.2870 35 1 4.1671 0.3584 1.8089 36 1 4.9692 1.0955 4.3531 37 1 4.9468 2.2460 2.9837 38 1 4.2050 3.3666 5.9077 39 1 0.0189 4.0903 5.5071 40 1 -0.0473 2.6045 3.5485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596891432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:43 Heat of formation + Delta-G solvation = -79.383237 kcal Electronic energy + Delta-G solvation = -23373.584923 eV Core-core repulsion = 19873.526342 eV Total energy + Delta-G solvation = -3500.058581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.92012 -41.79028 -39.85392 -36.94096 -36.29695 -34.85834 -32.59728 -31.57138 -29.96442 -29.56386 -28.17601 -25.11191 -24.29954 -23.93236 -22.34296 -22.10794 -19.80925 -18.58571 -18.24752 -18.02453 -17.53163 -17.23797 -16.62637 -16.54841 -16.19931 -15.89021 -15.16823 -15.10081 -14.68152 -14.61198 -14.31820 -14.22614 -13.88077 -13.62403 -13.31579 -13.18078 -13.12320 -12.90743 -12.69737 -12.60810 -12.49126 -12.18357 -12.15172 -12.01459 -11.87382 -11.78120 -11.69798 -10.63600 -10.56065 -9.90822 -9.44414 -9.39531 -8.21676 -6.36612 0.10814 0.24972 1.36688 1.39717 1.49642 1.82195 2.25932 2.40815 2.67178 3.08139 3.08378 3.36756 3.51841 3.77567 3.94778 4.00995 4.08643 4.19176 4.26125 4.29941 4.44879 4.57786 4.63157 4.68884 4.77079 4.88179 4.92327 5.00828 5.02173 5.07308 5.07937 5.10519 5.19313 5.25217 5.29961 5.41779 5.55647 5.59461 5.87797 5.90665 6.07419 6.71694 6.82930 7.29457 7.51274 8.85463 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.004410 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.282308 B = 6347.666331 C = 6816.561872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.601 5.601 4 C 0.262 3.738 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.510 3.490 14 O -0.594 6.594 15 C -0.064 4.064 16 H 0.132 0.868 17 C -0.102 4.102 18 C -0.083 4.083 19 C -0.063 4.063 20 C -0.151 4.151 21 C 0.084 3.916 22 F -0.144 7.144 23 C -0.157 4.157 24 C -0.078 4.078 25 C -0.098 4.098 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.020 0.980 32 H -0.007 1.007 33 H 0.266 0.734 34 H 0.126 0.874 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -9.842 17.306 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.331 5.331 4 C 0.141 3.859 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.298 3.702 14 O -0.474 6.474 15 C -0.085 4.085 16 H 0.150 0.850 17 C -0.140 4.140 18 C -0.119 4.119 19 C -0.064 4.064 20 C -0.170 4.170 21 C 0.065 3.935 22 F -0.123 7.123 23 C -0.175 4.175 24 C -0.096 4.096 25 C -0.099 4.099 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.038 0.962 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.081 0.919 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.246 -9.120 17.157 19.700 hybrid contribution 0.655 0.894 -0.813 1.374 sum -2.591 -8.226 16.344 18.480 Atomic orbital electron populations 1.22169 0.94841 1.03431 1.01694 1.21817 0.95202 0.81402 1.04189 1.48252 1.63422 1.15181 1.06286 1.18673 0.95735 0.91017 0.80501 1.21719 0.99128 1.30709 1.06280 0.92473 1.25871 1.01811 0.94475 0.97065 1.70066 1.37288 1.33161 1.16518 0.85423 0.79050 0.78073 0.78329 1.18728 1.20982 1.19489 1.20989 0.76452 0.86977 0.85757 1.90643 1.49902 1.19257 1.87628 1.20904 1.02601 0.96687 0.88345 0.85024 1.22344 0.91944 0.99035 1.00640 1.21121 0.95857 0.96456 0.98498 1.20581 0.96103 0.96000 0.93683 1.20683 0.98389 0.99374 0.98509 1.17652 0.95390 0.93802 0.86627 1.91470 1.97318 1.70817 1.52693 1.21203 0.97834 1.01273 0.97203 1.20691 0.98467 0.95015 0.95385 1.20360 0.94362 0.99364 0.95782 0.88564 0.91979 0.94658 0.90947 0.87466 0.96186 0.98916 0.92512 0.85619 0.90907 0.87004 0.91909 0.83380 0.82527 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.21 71.98 0.73 -3.16 16 2 C 0.10 2.76 5.79 86.38 0.50 3.26 16 3 N -0.60 -24.82 2.46 -826.14 -2.03 -26.85 16 4 C 0.26 14.14 5.22 85.64 0.45 14.59 16 5 C -0.54 -30.78 9.39 25.60 0.24 -30.54 16 6 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 9 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.51 20.80 6.69 87.66 0.59 21.39 16 14 O -0.59 -31.09 15.87 -3.02 -0.05 -31.14 16 15 C -0.06 -1.77 2.33 -11.62 -0.03 -1.80 16 16 H 0.13 2.70 6.39 -2.39 -0.02 2.68 16 17 C -0.10 -2.30 6.33 31.51 0.20 -2.10 16 18 C -0.08 -2.01 6.76 30.52 0.21 -1.80 16 19 C -0.06 -1.73 6.14 -19.60 -0.12 -1.85 16 20 C -0.15 -3.88 10.02 22.34 0.22 -3.66 16 21 C 0.08 2.21 7.30 22.35 0.16 2.37 16 22 F -0.14 -3.74 17.27 44.97 0.78 -2.96 16 23 C -0.16 -3.82 10.03 22.29 0.22 -3.60 16 24 C -0.08 -2.02 10.04 22.29 0.22 -1.79 16 25 C -0.10 -2.79 4.87 -19.59 -0.10 -2.88 16 26 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.34 7.98 -2.38 -0.02 1.32 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 30 H 0.11 2.23 5.93 -2.38 -0.01 2.22 16 31 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 32 H -0.01 -0.46 7.36 -2.39 -0.02 -0.48 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.88 7.89 -2.39 -0.02 1.87 16 36 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 39 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -75.96 339.02 6.02 -69.95 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.04 Total: 11.49 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 3.97 Total: -10.75 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -1.74 Total: -83.18 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.05 Total: -31.14 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.78 Total: -2.96 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -75.96 6.02 -69.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.436 kcal (2) G-P(sol) polarization free energy of solvation -75.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds