Wall clock time and date at job start Tue Mar 31 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46913 * 2 1 4 4 C 1.34770 * 119.99888 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99907 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00295 * 180.02562 * 4 3 2 7 7 N 1.46498 * 109.47484 * 179.97438 * 6 4 3 8 8 C 1.34773 * 119.99955 * 179.97438 * 7 6 4 9 9 O 1.21579 * 120.00385 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99760 * 180.02562 * 8 7 6 11 11 C 1.39962 * 119.99851 * 184.68441 * 10 8 7 12 12 C 1.39283 * 119.94826 * 324.30148 * 11 10 8 13 13 C 1.38487 * 120.42988 * 179.97438 * 12 11 10 14 14 C 1.37679 * 120.32085 * 0.29636 * 13 12 11 15 15 C 1.40741 * 119.88196 * 359.43251 * 14 13 12 16 16 C 1.41410 * 120.20964 * 180.31440 * 15 14 13 17 17 H 1.07995 * 120.00349 * 331.89692 * 16 15 14 18 18 C 1.39933 * 119.99802 * 151.90332 * 16 15 14 19 19 N 1.30838 * 119.99877 * 161.35792 * 18 16 15 20 20 Si 1.86801 * 120.00157 * 341.35368 * 18 16 15 21 21 H 1.48496 * 109.46959 * 90.54380 * 20 18 16 22 22 H 1.48497 * 109.47100 * 210.54151 * 20 18 16 23 23 H 1.48492 * 109.46919 * 330.54312 * 20 18 16 24 24 C 1.38233 * 119.94573 * 144.27817 * 11 10 8 25 25 H 1.09004 * 109.46909 * 299.99721 * 1 2 3 26 26 H 1.08995 * 109.47224 * 59.99394 * 1 2 3 27 27 H 1.09003 * 109.47165 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46909 * 240.00279 * 2 1 3 29 29 H 1.08997 * 109.47176 * 119.99823 * 2 1 3 30 30 H 0.97001 * 119.99702 * 0.02562 * 3 2 1 31 31 H 1.08996 * 109.47115 * 59.99301 * 6 4 3 32 32 H 1.09004 * 109.46777 * 300.00010 * 6 4 3 33 33 H 0.97003 * 119.99736 * 359.97438 * 7 6 4 34 34 H 0.97006 * 120.00244 * 4.68369 * 10 8 7 35 35 H 1.08002 * 119.78189 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.83846 * 180.02562 * 13 12 11 37 37 H 1.08000 * 120.05642 * 179.70912 * 14 13 12 38 38 H 0.97000 * 119.99775 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.15925 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8457 3.0484 0.0001 7 7 5.3107 3.0484 -0.0001 8 6 5.9845 4.2156 -0.0001 9 8 5.3767 5.2685 -0.0006 10 7 7.3323 4.2156 -0.0008 11 6 8.0321 5.4237 0.0982 12 6 7.5307 6.5699 -0.5140 13 6 8.2147 7.7705 -0.4221 14 6 9.4021 7.8427 0.2711 15 6 9.9180 6.6941 0.8997 16 6 11.1336 6.7619 1.6191 17 1 11.8833 7.4894 1.3451 18 6 11.3650 5.8864 2.6858 19 7 12.5848 5.6855 3.1144 20 14 9.9326 5.0044 3.4980 21 1 9.7035 3.7035 2.8197 22 1 10.2450 4.7676 4.9303 23 1 8.7106 5.8411 3.3897 24 6 9.2196 5.4774 0.8037 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.3879 2.1185 0.0004 31 1 3.4828 3.5617 0.8904 32 1 3.4819 3.5627 -0.8895 33 1 5.7957 2.2083 -0.0001 34 1 7.8173 3.3784 -0.0698 35 1 6.6024 6.5219 -1.0640 36 1 7.8169 8.6535 -0.9001 37 1 9.9343 8.7802 0.3361 38 1 12.7452 5.0788 3.8541 39 1 9.6088 4.5894 1.2794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596926070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:46 Heat of formation + Delta-G solvation = -44.673127 kcal Electronic energy + Delta-G solvation = -22168.069248 eV Core-core repulsion = 18689.435772 eV Total energy + Delta-G solvation = -3478.633476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49021 -39.66827 -37.58432 -35.83168 -34.55646 -34.18893 -33.27420 -31.32245 -30.27438 -28.99671 -27.12559 -25.09721 -23.34813 -21.69806 -21.55427 -20.93540 -20.01357 -18.68058 -17.45527 -17.00564 -16.72052 -16.34852 -15.97088 -15.45163 -15.31676 -14.68735 -14.44608 -14.36282 -14.31469 -13.52602 -13.30782 -13.00395 -12.92046 -12.86212 -12.48410 -12.33933 -12.00552 -11.95565 -11.48561 -10.92215 -10.74042 -10.50399 -10.34707 -10.22919 -9.87554 -9.58961 -9.57031 -9.18676 -9.13898 -9.05347 -7.57978 -7.12227 -6.91322 -4.44833 2.19132 2.38107 2.56636 2.72504 3.08532 3.12983 3.21301 3.37355 3.53111 4.01585 4.26036 4.46122 4.55608 4.56972 4.60105 4.84959 5.11726 5.14178 5.31621 5.41639 5.47644 5.54333 5.93412 6.06480 6.28706 6.44145 6.53967 6.59427 6.73650 6.79491 6.99145 7.07910 7.22940 7.50644 7.64490 7.73201 7.79967 7.88690 8.16663 8.27552 8.39294 8.68120 8.85050 8.85775 10.11241 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.003283 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.477340 B = 8527.712743 C = 9391.398002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.729 5.729 4 C 0.510 3.490 5 O -0.535 6.535 6 C 0.123 3.877 7 N -0.741 5.741 8 C 0.705 3.295 9 O -0.573 6.573 10 N -0.681 5.681 11 C 0.188 3.812 12 C -0.229 4.229 13 C -0.075 4.075 14 C -0.215 4.215 15 C 0.105 3.895 16 C -0.448 4.448 17 H 0.091 0.909 18 C 0.085 3.915 19 N -0.811 5.811 20 Si 0.915 3.085 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.247 1.247 24 C -0.267 4.267 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.405 0.595 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.406 0.594 34 H 0.400 0.600 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.284 0.716 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.717 -10.602 -4.652 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.382 5.382 4 C 0.296 3.704 5 O -0.412 6.412 6 C -0.006 4.006 7 N -0.401 5.401 8 C 0.406 3.594 9 O -0.449 6.449 10 N -0.327 5.327 11 C 0.096 3.904 12 C -0.250 4.250 13 C -0.094 4.094 14 C -0.234 4.234 15 C 0.102 3.898 16 C -0.477 4.477 17 H 0.109 0.891 18 C -0.134 4.134 19 N -0.435 5.435 20 Si 0.742 3.258 21 H -0.199 1.199 22 H -0.221 1.221 23 H -0.171 1.171 24 C -0.289 4.289 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.239 0.761 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.243 0.757 34 H 0.235 0.765 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.517 -10.435 -4.470 23.448 hybrid contribution -0.375 -1.038 0.487 1.206 sum -20.892 -11.473 -3.983 24.165 Atomic orbital electron populations 1.22015 0.94195 1.03410 1.02717 1.21339 0.94407 0.82593 1.02651 1.45942 1.06877 1.09411 1.76004 1.20672 0.82610 0.91464 0.75700 1.90715 1.55171 1.46146 1.49163 1.20802 0.81714 0.93152 1.04916 1.44748 1.05456 1.08444 1.81469 1.15799 0.81962 0.83638 0.78024 1.90922 1.67610 1.29672 1.56703 1.42595 1.04254 1.09558 1.76301 1.17268 0.92015 0.84071 0.97071 1.20501 1.02920 0.92510 1.09091 1.20561 0.95004 0.95993 0.97882 1.21049 0.97813 0.97507 1.07074 1.17479 0.91441 0.89921 0.90980 1.19437 1.00257 1.15891 1.12135 0.89062 1.26132 0.96565 0.94083 0.96571 1.69709 1.21493 1.29431 1.22858 0.86322 0.82779 0.80172 0.76503 1.19879 1.22129 1.17055 1.20841 0.99841 0.98625 1.09548 0.91808 0.91813 0.90652 0.91302 0.91300 0.76082 0.88388 0.88377 0.75684 0.76545 0.86858 0.88434 0.88109 0.90556 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.03 37.16 0.37 -0.19 16 2 C 0.11 0.70 6.39 -4.04 -0.03 0.67 16 3 N -0.73 -4.87 5.56 -60.29 -0.33 -5.21 16 4 C 0.51 5.14 7.90 -10.99 -0.09 5.06 16 5 O -0.54 -7.32 15.67 5.56 0.09 -7.23 16 6 C 0.12 1.29 6.15 -5.19 -0.03 1.26 16 7 N -0.74 -10.15 5.53 -66.42 -0.37 -10.51 16 8 C 0.71 12.65 8.40 -86.92 -0.73 11.92 16 9 O -0.57 -11.98 13.80 5.30 0.07 -11.91 16 10 N -0.68 -12.76 5.34 -14.27 -0.08 -12.83 16 11 C 0.19 4.28 6.28 -83.76 -0.53 3.75 16 12 C -0.23 -5.23 8.70 -39.10 -0.34 -5.57 16 13 C -0.08 -1.68 10.02 -39.69 -0.40 -2.08 16 14 C -0.21 -5.13 9.79 -38.84 -0.38 -5.52 16 15 C 0.11 2.73 5.14 -106.85 -0.55 2.18 16 16 C -0.45 -12.27 9.57 -37.74 -0.36 -12.63 16 17 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 18 C 0.08 2.26 5.41 -17.34 -0.09 2.17 16 19 N -0.81 -21.83 13.93 55.55 0.77 -21.05 16 20 Si 0.91 21.56 24.55 -169.99 -4.17 17.39 16 21 H -0.27 -6.15 6.44 56.52 0.36 -5.78 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.25 -6.14 7.04 56.52 0.40 -5.74 16 24 C -0.27 -6.54 7.21 -38.69 -0.28 -6.82 16 25 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.40 1.58 8.47 -40.82 -0.35 1.23 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.41 5.21 7.46 -40.82 -0.30 4.91 16 34 H 0.40 6.29 8.84 -40.82 -0.36 5.93 16 35 H 0.11 2.55 6.25 -52.49 -0.33 2.23 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 38 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 39 H 0.11 2.54 4.42 -52.49 -0.23 2.31 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -33.37 330.84 -7.44 -40.80 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -4.97 Total: 11.39 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -3.43 Total: -5.81 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.00 Total: -49.61 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.16 Total: -19.14 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.17 Total: 17.39 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.37 -7.44 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.870 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds