Wall clock time and date at job start Tue Mar 31 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46913 * 2 1 4 4 C 1.34770 * 119.99888 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99907 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00295 * 180.02562 * 4 3 2 7 7 N 1.46498 * 109.47484 * 179.97438 * 6 4 3 8 8 C 1.34773 * 119.99955 * 179.97438 * 7 6 4 9 9 O 1.21579 * 120.00385 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99760 * 180.02562 * 8 7 6 11 11 C 1.39962 * 119.99851 * 184.68441 * 10 8 7 12 12 C 1.39283 * 119.94826 * 324.30148 * 11 10 8 13 13 C 1.38487 * 120.42988 * 179.97438 * 12 11 10 14 14 C 1.37679 * 120.32085 * 0.29636 * 13 12 11 15 15 C 1.40741 * 119.88196 * 359.43251 * 14 13 12 16 16 C 1.41410 * 120.20964 * 180.31440 * 15 14 13 17 17 H 1.07995 * 120.00349 * 331.89692 * 16 15 14 18 18 C 1.39933 * 119.99802 * 151.90332 * 16 15 14 19 19 N 1.30838 * 119.99877 * 161.35792 * 18 16 15 20 20 Si 1.86801 * 120.00157 * 341.35368 * 18 16 15 21 21 H 1.48496 * 109.46959 * 90.54380 * 20 18 16 22 22 H 1.48497 * 109.47100 * 210.54151 * 20 18 16 23 23 H 1.48492 * 109.46919 * 330.54312 * 20 18 16 24 24 C 1.38233 * 119.94573 * 144.27817 * 11 10 8 25 25 H 1.09004 * 109.46909 * 299.99721 * 1 2 3 26 26 H 1.08995 * 109.47224 * 59.99394 * 1 2 3 27 27 H 1.09003 * 109.47165 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46909 * 240.00279 * 2 1 3 29 29 H 1.08997 * 109.47176 * 119.99823 * 2 1 3 30 30 H 0.97001 * 119.99702 * 0.02562 * 3 2 1 31 31 H 1.08996 * 109.47115 * 59.99301 * 6 4 3 32 32 H 1.09004 * 109.46777 * 300.00010 * 6 4 3 33 33 H 0.97003 * 119.99736 * 359.97438 * 7 6 4 34 34 H 0.97006 * 120.00244 * 4.68369 * 10 8 7 35 35 H 1.08002 * 119.78189 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.83846 * 180.02562 * 13 12 11 37 37 H 1.08000 * 120.05642 * 179.70912 * 14 13 12 38 38 H 0.97000 * 119.99775 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.15925 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8457 3.0484 0.0001 7 7 5.3107 3.0484 -0.0001 8 6 5.9845 4.2156 -0.0001 9 8 5.3767 5.2685 -0.0006 10 7 7.3323 4.2156 -0.0008 11 6 8.0321 5.4237 0.0982 12 6 7.5307 6.5699 -0.5140 13 6 8.2147 7.7705 -0.4221 14 6 9.4021 7.8427 0.2711 15 6 9.9180 6.6941 0.8997 16 6 11.1336 6.7619 1.6191 17 1 11.8833 7.4894 1.3451 18 6 11.3650 5.8864 2.6858 19 7 12.5848 5.6855 3.1144 20 14 9.9326 5.0044 3.4980 21 1 9.7035 3.7035 2.8197 22 1 10.2450 4.7676 4.9303 23 1 8.7106 5.8411 3.3897 24 6 9.2196 5.4774 0.8037 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.3879 2.1185 0.0004 31 1 3.4828 3.5617 0.8904 32 1 3.4819 3.5627 -0.8895 33 1 5.7957 2.2083 -0.0001 34 1 7.8173 3.3784 -0.0698 35 1 6.6024 6.5219 -1.0640 36 1 7.8169 8.6535 -0.9001 37 1 9.9343 8.7802 0.3361 38 1 12.7452 5.0788 3.8541 39 1 9.6088 4.5894 1.2794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596926070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:46 Heat of formation + Delta-G solvation = -70.301001 kcal Electronic energy + Delta-G solvation = -22169.180556 eV Core-core repulsion = 18689.435772 eV Total energy + Delta-G solvation = -3479.744784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70550 -40.76038 -39.30049 -36.53654 -36.09525 -35.52432 -35.12257 -32.21221 -31.92428 -30.48432 -28.22116 -27.05109 -23.96904 -23.39550 -23.01980 -21.77963 -21.59378 -20.05208 -19.23008 -18.35776 -17.60942 -17.43481 -17.19210 -16.86099 -16.48169 -16.28846 -15.92487 -15.55739 -15.35013 -15.07010 -14.72497 -14.39856 -14.27190 -13.92145 -13.75417 -13.35789 -13.30412 -12.73651 -12.70464 -12.65880 -12.39043 -12.30545 -12.10233 -11.72802 -11.26898 -11.17637 -10.99977 -10.88314 -10.36097 -10.15627 -9.48392 -8.91913 -8.86890 -6.49724 0.70175 0.83266 1.22985 1.33738 1.40160 1.42005 1.47711 2.04114 2.10280 2.19277 2.63678 3.16958 3.53488 3.61096 4.12356 4.20178 4.29264 4.32954 4.33894 4.51443 4.59509 4.72724 4.84605 4.91105 4.98704 5.01514 5.05317 5.20419 5.27450 5.30182 5.35988 5.57461 5.72234 5.89415 5.91336 6.03454 6.25346 6.37789 6.42523 6.73730 6.83310 6.91142 7.05778 7.42578 8.17650 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.003283 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.477340 B = 8527.712743 C = 9391.398002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.110 3.890 3 N -0.711 5.711 4 C 0.513 3.487 5 O -0.576 6.576 6 C 0.119 3.881 7 N -0.727 5.727 8 C 0.706 3.294 9 O -0.602 6.602 10 N -0.679 5.679 11 C 0.191 3.809 12 C -0.227 4.227 13 C -0.070 4.070 14 C -0.228 4.228 15 C 0.087 3.913 16 C -0.480 4.480 17 H 0.062 0.938 18 C 0.053 3.947 19 N -0.845 5.845 20 Si 0.965 3.035 21 H -0.255 1.255 22 H -0.278 1.278 23 H -0.267 1.267 24 C -0.276 4.276 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.420 0.580 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.412 0.588 34 H 0.415 0.585 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.294 0.706 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.804 -11.597 -5.098 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.013 4.013 3 N -0.365 5.365 4 C 0.299 3.701 5 O -0.455 6.455 6 C -0.008 4.008 7 N -0.386 5.386 8 C 0.406 3.594 9 O -0.481 6.481 10 N -0.327 5.327 11 C 0.097 3.903 12 C -0.248 4.248 13 C -0.089 4.089 14 C -0.248 4.248 15 C 0.083 3.917 16 C -0.510 4.510 17 H 0.080 0.920 18 C -0.162 4.162 19 N -0.471 5.471 20 Si 0.790 3.210 21 H -0.181 1.181 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.298 4.298 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.258 0.742 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.250 0.750 34 H 0.251 0.749 35 H 0.139 0.861 36 H 0.150 0.850 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.659 -11.475 -4.926 26.752 hybrid contribution 0.411 -0.711 0.492 0.957 sum -23.247 -12.186 -4.434 26.620 Atomic orbital electron populations 1.21970 0.91788 1.04255 1.03462 1.21436 0.96292 0.81854 1.01740 1.45866 1.06023 1.10458 1.74108 1.20590 0.83374 0.90704 0.75436 1.90705 1.56358 1.47035 1.51450 1.21039 0.79682 0.93825 1.06256 1.44662 1.06820 1.07293 1.79822 1.15849 0.81494 0.84264 0.77767 1.90896 1.68043 1.31034 1.58157 1.42485 1.04830 1.09001 1.76357 1.17300 0.91561 0.85594 0.95884 1.20785 1.02938 0.92735 1.08357 1.20911 0.93923 0.97221 0.96796 1.21240 0.98719 0.97410 1.07441 1.17661 0.91379 0.91274 0.91342 1.19433 1.00878 1.16660 1.14026 0.91961 1.26702 0.98394 0.94560 0.96560 1.69723 1.22654 1.30791 1.23978 0.85551 0.79262 0.79554 0.76662 1.18085 1.20505 1.19113 1.20879 1.00578 0.98168 1.10134 0.91103 0.90960 0.89811 0.92173 0.92363 0.74222 0.87292 0.86746 0.75003 0.74887 0.86066 0.84978 0.87413 0.89584 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 10.03 71.98 0.72 0.06 16 2 C 0.11 1.15 6.39 86.38 0.55 1.70 16 3 N -0.71 -7.79 5.56 -463.05 -2.57 -10.37 16 4 C 0.51 9.29 7.90 87.66 0.69 9.98 16 5 O -0.58 -14.98 15.67 -3.03 -0.05 -15.02 16 6 C 0.12 2.19 6.15 85.63 0.53 2.72 16 7 N -0.73 -18.21 5.53 -482.31 -2.67 -20.88 16 8 C 0.71 23.68 8.40 179.06 1.50 25.18 16 9 O -0.60 -23.76 13.80 -3.97 -0.05 -23.82 16 10 N -0.68 -24.06 5.34 -317.33 -1.69 -25.76 16 11 C 0.19 8.35 6.28 38.09 0.24 8.59 16 12 C -0.23 -9.87 8.70 22.58 0.20 -9.67 16 13 C -0.07 -2.97 10.02 22.20 0.22 -2.75 16 14 C -0.23 -10.84 9.79 22.75 0.22 -10.62 16 15 C 0.09 4.52 5.14 -21.31 -0.11 4.42 16 16 C -0.48 -27.20 9.57 23.46 0.22 -26.97 16 17 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 18 C 0.05 2.86 5.41 85.25 0.46 3.32 16 19 N -0.85 -46.50 13.93 21.82 0.30 -46.20 16 20 Si 0.96 44.29 24.55 68.60 1.68 45.98 16 21 H -0.26 -10.90 6.44 99.48 0.64 -10.26 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.27 -13.00 7.04 99.48 0.70 -12.30 16 24 C -0.28 -13.34 7.21 22.85 0.16 -13.17 16 25 H 0.07 0.23 8.14 -2.38 -0.02 0.21 16 26 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.42 1.98 8.47 -92.71 -0.79 1.19 16 31 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.41 9.72 7.46 -92.71 -0.69 9.03 16 34 H 0.41 12.17 8.84 -92.70 -0.82 11.35 16 35 H 0.12 5.14 6.25 -2.91 -0.02 5.12 16 36 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 37 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 38 H 0.29 14.52 8.30 -92.71 -0.77 13.75 16 39 H 0.11 5.02 4.42 -2.91 -0.01 5.01 16 Total: -1.00 -72.08 330.84 -0.68 -72.77 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -1.25 Total: 30.51 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.62 Total: -7.21 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -6.63 Total: -103.20 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.10 Total: -38.84 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.68 Total: 45.98 kcal Total: -72.08 -0.68 -72.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.465 kcal (2) G-P(sol) polarization free energy of solvation -72.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds