Wall clock time and date at job start Tue Mar 31 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35674 * 116.99896 * 2 1 4 4 C 1.38813 * 119.64078 * 179.72726 * 3 2 1 5 5 C 1.38554 * 119.25325 * 179.79464 * 4 3 2 6 6 C 1.38542 * 118.56304 * 0.47368 * 5 4 3 7 7 C 1.38886 * 119.22802 * 359.74767 * 6 5 4 8 8 N 1.39382 * 119.66164 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00112 * 174.67511 * 8 7 6 10 10 O 1.21580 * 119.99798 * 4.94177 * 9 8 7 11 11 N 1.34780 * 120.00041 * 184.93952 * 9 8 7 12 12 C 1.46507 * 119.99845 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47004 * 185.28927 * 12 11 9 14 14 C 1.50710 * 115.54544 * 65.20967 * 13 12 11 15 15 H 1.07999 * 119.99713 * 273.26411 * 14 13 12 16 16 C 1.37876 * 119.99930 * 93.27162 * 14 13 12 17 17 N 1.31515 * 120.00119 * 4.49766 * 16 14 13 18 18 Si 1.86801 * 119.99513 * 184.50190 * 16 14 13 19 19 H 1.48496 * 109.47162 * 90.00098 * 18 16 14 20 20 H 1.48500 * 109.46714 * 209.99792 * 18 16 14 21 21 H 1.48501 * 109.47415 * 329.99519 * 18 16 14 22 22 C 1.52989 * 117.50364 * 279.53881 * 13 12 11 23 23 C 1.52992 * 117.50039 * 210.87197 * 13 12 11 24 24 N 1.32300 * 119.64012 * 0.02562 * 3 2 1 25 25 H 1.09001 * 109.47152 * 59.99893 * 1 2 3 26 26 H 1.08997 * 109.47221 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47016 * 299.99813 * 1 2 3 28 28 H 1.07996 * 120.37242 * 0.02562 * 4 3 2 29 29 H 1.08011 * 120.71277 * 180.19898 * 5 4 3 30 30 H 1.08004 * 120.38683 * 179.77468 * 6 5 4 31 31 H 0.97003 * 120.00269 * 354.66162 * 8 7 6 32 32 H 0.96994 * 120.00087 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.47000 * 305.29617 * 12 11 9 34 34 H 1.09003 * 109.46791 * 65.29165 * 12 11 9 35 35 H 0.96999 * 119.99394 * 185.00398 * 17 16 14 36 36 H 1.09003 * 117.50139 * 359.97438 * 22 13 12 37 37 H 1.09000 * 117.50134 * 145.02157 * 22 13 12 38 38 H 1.09001 * 117.50261 * 214.98481 * 23 13 12 39 39 H 1.09004 * 117.49998 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4316 1.2729 0.0057 5 6 4.0523 2.5116 0.0014 6 6 3.2611 3.6489 0.0014 7 6 1.8789 3.5135 0.0005 8 7 1.0743 4.6516 0.0000 9 6 -0.2636 4.5310 -0.1093 10 8 -0.7760 3.4285 -0.1169 11 7 -1.0336 5.6327 -0.2100 12 6 -2.4879 5.5015 -0.3293 13 6 -3.1071 6.8815 -0.5597 14 6 -2.7377 7.5510 -1.8584 15 1 -1.8400 8.1481 -1.9218 16 6 -3.5457 7.4013 -2.9655 17 7 -4.6832 6.7486 -2.8659 18 14 -3.0248 8.1254 -4.6067 19 1 -2.2294 7.1228 -5.3599 20 1 -4.2312 8.4911 -5.3916 21 1 -2.1998 9.3379 -4.3734 22 6 -3.3119 7.7772 0.6636 23 6 -4.5169 7.1227 -0.0167 24 7 1.3174 2.3139 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0200 0.3673 0.0098 29 1 5.1296 2.5889 0.0024 30 1 3.7139 4.6294 0.0017 31 1 1.4772 5.5305 0.0784 32 1 -0.6248 6.5123 -0.2035 33 1 -2.7262 4.8511 -1.1708 34 1 -2.8903 5.0712 0.5878 35 1 -5.2166 6.5803 -3.6584 36 1 -3.0058 7.3832 1.6327 37 1 -3.1798 8.8507 0.5291 38 1 -5.1772 7.7660 -0.5984 39 1 -5.0035 6.2982 0.5044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596955470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:39 Heat of formation + Delta-G solvation = 12.413190 kcal Electronic energy + Delta-G solvation = -22849.055920 eV Core-core repulsion = 19372.897892 eV Total energy + Delta-G solvation = -3476.158028 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83588 -39.41573 -37.80225 -36.74085 -34.43527 -33.39739 -32.12544 -31.91889 -29.83624 -27.13605 -26.27097 -25.19681 -23.20531 -23.01213 -21.18769 -20.40028 -19.45203 -18.75532 -17.85213 -16.81513 -16.21330 -16.00979 -15.95682 -15.56481 -15.10568 -14.69052 -14.38001 -14.15688 -13.81197 -13.56824 -13.30149 -13.08987 -12.71085 -12.30025 -12.04754 -11.63007 -11.55817 -11.25483 -11.02720 -10.91242 -10.56375 -10.35517 -10.24549 -10.12546 -9.52692 -9.45302 -9.13050 -9.04297 -8.45251 -8.34991 -8.16386 -7.90817 -6.09663 -4.19118 1.22445 1.35250 2.72708 3.21920 3.24974 3.32687 3.33179 3.53548 4.04189 4.26035 4.34420 4.70243 4.99373 5.02507 5.16795 5.18755 5.33826 5.37297 5.48316 5.61380 5.82311 5.94050 6.00184 6.16104 6.18341 6.32978 6.42797 6.50176 6.65650 6.70538 6.72580 6.99418 7.13395 7.26124 7.37051 7.38334 7.60525 7.78106 7.99727 8.31266 8.49236 8.81955 9.04405 9.47926 10.97270 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.003788 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.811318 B = 7390.332745 C = 7579.860657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.311 6.311 3 C 0.351 3.649 4 C -0.236 4.236 5 C -0.014 4.014 6 C -0.257 4.257 7 C 0.430 3.570 8 N -0.672 5.672 9 C 0.687 3.313 10 O -0.541 6.541 11 N -0.716 5.716 12 C 0.182 3.818 13 C 0.018 3.982 14 C -0.496 4.496 15 H 0.059 0.941 16 C 0.073 3.927 17 N -0.875 5.875 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.214 4.214 23 C -0.133 4.133 24 N -0.527 5.527 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.413 0.587 32 H 0.396 0.604 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.639 -6.204 6.526 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.218 6.218 3 C 0.171 3.829 4 C -0.259 4.259 5 C -0.040 4.040 6 C -0.281 4.281 7 C 0.197 3.803 8 N -0.320 5.320 9 C 0.386 3.614 10 O -0.413 6.413 11 N -0.369 5.369 12 C 0.059 3.941 13 C 0.017 3.983 14 C -0.534 4.534 15 H 0.077 0.923 16 C -0.131 4.131 17 N -0.511 5.511 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.251 4.251 23 C -0.171 4.171 24 N -0.256 5.256 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.159 0.841 30 H 0.154 0.846 31 H 0.249 0.751 32 H 0.229 0.771 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.967 -7.497 6.395 16.286 hybrid contribution 1.146 1.434 -0.989 2.085 sum 14.113 -6.063 5.406 16.284 Atomic orbital electron populations 1.22846 0.76460 1.02111 1.03718 1.86194 1.23578 1.24463 1.87523 1.19658 0.88861 0.84435 0.89969 1.20872 0.91867 0.99438 1.13683 1.21053 0.99977 0.90618 0.92337 1.21227 0.91692 1.00558 1.14616 1.17727 0.86922 0.85117 0.90525 1.42944 1.06327 1.07563 1.75184 1.16144 0.80303 0.85813 0.79156 1.90970 1.71398 1.24438 1.54504 1.45219 1.08425 1.06667 1.76605 1.20950 0.75634 0.98466 0.99071 1.19073 0.96386 0.90780 0.92090 1.20322 1.08247 1.31381 0.93422 0.92331 1.24973 0.94147 0.95062 0.98875 1.70006 1.11750 1.40426 1.28943 0.86652 0.78140 0.79472 0.84108 1.20659 1.21206 1.19867 1.23071 1.06967 0.98769 0.96321 1.22440 0.91565 1.01449 1.01614 1.67203 1.39340 0.97084 1.21996 0.91675 0.89207 0.91933 0.84495 0.84074 0.84591 0.75056 0.77067 0.91464 0.94534 0.92884 0.91848 0.90407 0.88871 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.38 101.05 1.05 1.66 16 2 O -0.31 -4.61 10.47 -18.73 -0.20 -4.81 16 3 C 0.35 5.35 7.48 -17.14 -0.13 5.22 16 4 C -0.24 -2.77 10.04 -39.25 -0.39 -3.17 16 5 C -0.01 -0.14 10.16 -39.35 -0.40 -0.54 16 6 C -0.26 -2.82 9.93 -39.23 -0.39 -3.21 16 7 C 0.43 6.44 7.42 -154.70 -1.15 5.29 16 8 N -0.67 -9.77 5.39 -15.83 -0.09 -9.86 16 9 C 0.69 12.95 8.52 -86.92 -0.74 12.21 16 10 O -0.54 -12.19 14.59 5.30 0.08 -12.11 16 11 N -0.72 -13.34 5.46 -65.22 -0.36 -13.70 16 12 C 0.18 4.01 5.51 -4.04 -0.02 3.99 16 13 C 0.02 0.40 1.60 -155.67 -0.25 0.15 16 14 C -0.50 -12.59 8.77 -34.44 -0.30 -12.89 16 15 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 16 C 0.07 1.93 5.41 -17.82 -0.10 1.83 16 17 N -0.88 -24.07 11.93 55.43 0.66 -23.41 16 18 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 22 C -0.21 -4.37 9.96 -26.70 -0.27 -4.63 16 23 C -0.13 -3.02 8.86 -26.70 -0.24 -3.25 16 24 N -0.53 -9.14 6.73 -12.44 -0.08 -9.22 16 25 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 28 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 30 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 31 H 0.41 4.29 8.72 -40.82 -0.36 3.94 16 32 H 0.40 6.49 8.48 -40.82 -0.35 6.15 16 33 H 0.07 1.70 8.13 -51.93 -0.42 1.28 16 34 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.09 2.31 7.65 -51.93 -0.40 1.91 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -31.75 339.64 -8.50 -40.25 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.29 Total: 9.57 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -3.32 Total: 2.66 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.14 Total: -56.18 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.12 Total: -16.92 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.75 -8.50 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596955470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.662 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds