Wall clock time and date at job start Tue Mar 31 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35674 * 116.99896 * 2 1 4 4 C 1.38813 * 119.64078 * 179.72726 * 3 2 1 5 5 C 1.38554 * 119.25325 * 179.79464 * 4 3 2 6 6 C 1.38542 * 118.56304 * 0.47368 * 5 4 3 7 7 C 1.38886 * 119.22802 * 359.74767 * 6 5 4 8 8 N 1.39382 * 119.66164 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00112 * 174.67511 * 8 7 6 10 10 O 1.21580 * 119.99798 * 4.94177 * 9 8 7 11 11 N 1.34780 * 120.00041 * 184.93952 * 9 8 7 12 12 C 1.46507 * 119.99845 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47004 * 185.28927 * 12 11 9 14 14 C 1.50710 * 115.54544 * 65.20967 * 13 12 11 15 15 H 1.07999 * 119.99713 * 273.26411 * 14 13 12 16 16 C 1.37876 * 119.99930 * 93.27162 * 14 13 12 17 17 N 1.31515 * 120.00119 * 4.49766 * 16 14 13 18 18 Si 1.86801 * 119.99513 * 184.50190 * 16 14 13 19 19 H 1.48496 * 109.47162 * 90.00098 * 18 16 14 20 20 H 1.48500 * 109.46714 * 209.99792 * 18 16 14 21 21 H 1.48501 * 109.47415 * 329.99519 * 18 16 14 22 22 C 1.52989 * 117.50364 * 279.53881 * 13 12 11 23 23 C 1.52992 * 117.50039 * 210.87197 * 13 12 11 24 24 N 1.32300 * 119.64012 * 0.02562 * 3 2 1 25 25 H 1.09001 * 109.47152 * 59.99893 * 1 2 3 26 26 H 1.08997 * 109.47221 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47016 * 299.99813 * 1 2 3 28 28 H 1.07996 * 120.37242 * 0.02562 * 4 3 2 29 29 H 1.08011 * 120.71277 * 180.19898 * 5 4 3 30 30 H 1.08004 * 120.38683 * 179.77468 * 6 5 4 31 31 H 0.97003 * 120.00269 * 354.66162 * 8 7 6 32 32 H 0.96994 * 120.00087 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.47000 * 305.29617 * 12 11 9 34 34 H 1.09003 * 109.46791 * 65.29165 * 12 11 9 35 35 H 0.96999 * 119.99394 * 185.00398 * 17 16 14 36 36 H 1.09003 * 117.50139 * 359.97438 * 22 13 12 37 37 H 1.09000 * 117.50134 * 145.02157 * 22 13 12 38 38 H 1.09001 * 117.50261 * 214.98481 * 23 13 12 39 39 H 1.09004 * 117.49998 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4316 1.2729 0.0057 5 6 4.0523 2.5116 0.0014 6 6 3.2611 3.6489 0.0014 7 6 1.8789 3.5135 0.0005 8 7 1.0743 4.6516 0.0000 9 6 -0.2636 4.5310 -0.1093 10 8 -0.7760 3.4285 -0.1169 11 7 -1.0336 5.6327 -0.2100 12 6 -2.4879 5.5015 -0.3293 13 6 -3.1071 6.8815 -0.5597 14 6 -2.7377 7.5510 -1.8584 15 1 -1.8400 8.1481 -1.9218 16 6 -3.5457 7.4013 -2.9655 17 7 -4.6832 6.7486 -2.8659 18 14 -3.0248 8.1254 -4.6067 19 1 -2.2294 7.1228 -5.3599 20 1 -4.2312 8.4911 -5.3916 21 1 -2.1998 9.3379 -4.3734 22 6 -3.3119 7.7772 0.6636 23 6 -4.5169 7.1227 -0.0167 24 7 1.3174 2.3139 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0200 0.3673 0.0098 29 1 5.1296 2.5889 0.0024 30 1 3.7139 4.6294 0.0017 31 1 1.4772 5.5305 0.0784 32 1 -0.6248 6.5123 -0.2035 33 1 -2.7262 4.8511 -1.1708 34 1 -2.8903 5.0712 0.5878 35 1 -5.2166 6.5803 -3.6584 36 1 -3.0058 7.3832 1.6327 37 1 -3.1798 8.8507 0.5291 38 1 -5.1772 7.7660 -0.5984 39 1 -5.0035 6.2982 0.5044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596955470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:39 Heat of formation + Delta-G solvation = -9.754512 kcal Electronic energy + Delta-G solvation = -22850.017184 eV Core-core repulsion = 19372.897892 eV Total energy + Delta-G solvation = -3477.119291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.95271 -40.73728 -39.01470 -38.38534 -35.68849 -34.99325 -33.90367 -33.12913 -30.91302 -28.42849 -27.86280 -27.00020 -24.30291 -24.07286 -22.90871 -21.77838 -21.25365 -19.91362 -19.26442 -18.04587 -17.91030 -17.11205 -16.87972 -16.81541 -16.64308 -16.43427 -15.89203 -15.63977 -15.16599 -14.94770 -14.55648 -14.40341 -14.07979 -13.79039 -13.39314 -13.14528 -12.95385 -12.81020 -12.67208 -12.48685 -12.37248 -11.99030 -11.59231 -11.39362 -11.34376 -11.00417 -10.57921 -10.38804 -10.27125 -10.04716 -9.83546 -8.97201 -8.09830 -6.23044 0.21227 0.45348 1.40950 1.43398 1.49694 1.50929 2.16283 2.20491 2.41907 2.95578 3.02749 3.17889 3.51373 3.68885 4.07008 4.16801 4.26095 4.36193 4.39622 4.44623 4.53898 4.56513 4.65447 4.72011 4.78625 4.91603 5.00187 5.04309 5.28567 5.31385 5.32841 5.58929 5.60297 5.62074 5.73438 5.77990 5.87002 6.28813 6.36584 6.81422 6.84814 7.25847 7.45998 7.63220 8.96741 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.003788 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.811318 B = 7390.332745 C = 7579.860657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.318 6.318 3 C 0.312 3.688 4 C -0.226 4.226 5 C -0.004 4.004 6 C -0.234 4.234 7 C 0.390 3.610 8 N -0.657 5.657 9 C 0.686 3.314 10 O -0.585 6.585 11 N -0.709 5.709 12 C 0.201 3.799 13 C -0.002 4.002 14 C -0.499 4.499 15 H 0.064 0.936 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.947 3.053 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.260 1.260 22 C -0.177 4.177 23 C -0.146 4.146 24 N -0.572 5.572 25 H 0.035 0.965 26 H 0.124 0.876 27 H 0.041 0.959 28 H 0.162 0.838 29 H 0.192 0.808 30 H 0.176 0.824 31 H 0.433 0.567 32 H 0.409 0.591 33 H 0.023 0.977 34 H 0.037 0.963 35 H 0.257 0.743 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.230 -5.240 7.140 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.225 6.225 3 C 0.133 3.867 4 C -0.248 4.248 5 C -0.029 4.029 6 C -0.258 4.258 7 C 0.159 3.841 8 N -0.308 5.308 9 C 0.385 3.615 10 O -0.460 6.460 11 N -0.363 5.363 12 C 0.076 3.924 13 C -0.003 4.003 14 C -0.537 4.537 15 H 0.082 0.918 16 C -0.178 4.178 17 N -0.546 5.546 18 Si 0.773 3.227 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.184 1.184 22 C -0.214 4.214 23 C -0.185 4.185 24 N -0.302 5.302 25 H 0.054 0.946 26 H 0.142 0.858 27 H 0.060 0.940 28 H 0.179 0.821 29 H 0.209 0.791 30 H 0.193 0.807 31 H 0.273 0.727 32 H 0.244 0.756 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.635 -6.484 7.022 19.185 hybrid contribution 0.152 1.103 -1.140 1.593 sum 16.786 -5.381 5.883 18.583 Atomic orbital electron populations 1.22738 0.76679 1.03490 1.01181 1.86173 1.23367 1.24949 1.88032 1.20150 0.90292 0.83969 0.92305 1.21322 0.90380 1.01593 1.11476 1.21675 1.02195 0.89042 0.90028 1.21688 0.89697 1.02987 1.11389 1.18206 0.88499 0.84413 0.92998 1.42605 1.04555 1.08863 1.74764 1.16302 0.81667 0.84936 0.78608 1.90949 1.72772 1.26022 1.56292 1.44935 1.07169 1.07434 1.76778 1.20469 0.77686 0.97070 0.97205 1.19088 0.96799 0.91629 0.92803 1.20671 1.07957 1.30733 0.94350 0.91766 1.25690 0.94338 0.95738 1.01998 1.70134 1.12864 1.42196 1.29364 0.85730 0.77566 0.78964 0.80422 1.21190 1.21555 1.18448 1.23039 1.03616 0.98614 0.96148 1.22341 0.91696 1.01932 1.02487 1.66990 1.41587 0.98577 1.23000 0.94602 0.85757 0.94035 0.82068 0.79107 0.80709 0.72696 0.75557 0.95851 0.94475 0.93343 0.89221 0.89764 0.91411 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.61 10.38 113.37 1.18 2.79 16 2 O -0.32 -9.62 10.47 -89.92 -0.94 -10.57 16 3 C 0.31 9.47 7.48 84.76 0.63 10.11 16 4 C -0.23 -4.69 10.04 22.48 0.23 -4.46 16 5 C 0.00 -0.06 10.16 22.42 0.23 0.16 16 6 C -0.23 -4.24 9.93 22.50 0.22 -4.02 16 7 C 0.39 11.22 7.42 132.86 0.99 12.20 16 8 N -0.66 -18.45 5.39 -322.27 -1.74 -20.19 16 9 C 0.69 26.20 8.52 179.05 1.53 27.73 16 10 O -0.58 -27.65 14.59 -3.97 -0.06 -27.71 16 11 N -0.71 -26.37 5.46 -478.53 -2.61 -28.98 16 12 C 0.20 9.03 5.51 86.38 0.48 9.51 16 13 C 0.00 -0.11 1.60 -52.93 -0.08 -0.19 16 14 C -0.50 -25.27 8.77 25.60 0.22 -25.04 16 15 H 0.06 3.11 7.82 -2.91 -0.02 3.08 16 16 C 0.02 1.20 5.41 84.65 0.46 1.66 16 17 N -0.91 -51.38 11.93 21.45 0.26 -51.12 16 18 Si 0.95 42.40 29.54 68.60 2.03 44.42 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 C -0.18 -6.92 9.96 30.62 0.30 -6.62 16 23 C -0.15 -6.71 8.86 30.62 0.27 -6.44 16 24 N -0.57 -20.18 6.73 -306.13 -2.06 -22.24 16 25 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 26 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.04 1.37 8.10 -2.39 -0.02 1.35 16 28 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.19 1.00 8.06 -2.90 -0.02 0.98 16 30 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 31 H 0.43 8.01 8.72 -92.71 -0.81 7.20 16 32 H 0.41 12.88 8.48 -92.71 -0.79 12.10 16 33 H 0.02 1.24 8.13 -2.39 -0.02 1.22 16 34 H 0.04 1.65 8.09 -2.39 -0.02 1.63 16 35 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 36 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.08 3.20 8.14 -2.39 -0.02 3.19 16 38 H 0.07 3.44 7.65 -2.39 -0.02 3.43 16 39 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -73.22 339.64 1.01 -72.21 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.51 Total: 26.79 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 6.65 Total: 17.39 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -6.16 Total: -122.53 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -1.00 Total: -38.27 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -73.22 1.01 -72.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596955470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.455 kcal (2) G-P(sol) polarization free energy of solvation -73.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds