Wall clock time and date at job start Tue Mar 31 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35743 * 116.99775 * 2 1 4 4 C 1.39443 * 120.80476 * 179.97438 * 3 2 1 5 5 N 1.31962 * 119.08214 * 179.97438 * 4 3 2 6 6 C 1.32541 * 120.83294 * 359.97438 * 5 4 3 7 7 C 1.48297 * 119.10989 * 179.97438 * 6 5 4 8 8 O 1.21500 * 119.99950 * 325.02882 * 7 6 5 9 9 N 1.34768 * 119.99727 * 145.01986 * 7 6 5 10 10 C 1.46923 * 120.63496 * 354.24166 * 9 7 6 11 11 C 1.53187 * 108.77943 * 233.62864 * 10 9 7 12 12 C 1.53047 * 109.31120 * 305.36438 * 11 10 9 13 13 C 1.53043 * 109.53767 * 61.36429 * 12 11 10 14 14 H 1.09002 * 109.49578 * 58.58262 * 13 12 11 15 15 C 1.50694 * 109.49677 * 178.68296 * 13 12 11 16 16 H 1.08005 * 119.99871 * 359.97438 * 15 13 12 17 17 C 1.37870 * 120.00144 * 179.97438 * 15 13 12 18 18 N 1.31513 * 120.00276 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00091 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47304 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46863 * 120.00453 * 19 17 15 22 22 H 1.48504 * 109.47179 * 239.99784 * 19 17 15 23 23 C 1.46929 * 120.62938 * 174.26127 * 9 7 6 24 24 N 1.32538 * 121.77800 * 0.26763 * 6 5 4 25 25 C 1.31959 * 120.83730 * 359.46324 * 24 6 5 26 26 H 1.08999 * 109.47176 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47203 * 300.00039 * 1 2 3 28 28 H 1.09004 * 109.47249 * 60.00259 * 1 2 3 29 29 H 1.07998 * 120.46326 * 0.02562 * 4 3 2 30 30 H 1.09005 * 109.58787 * 113.84231 * 10 9 7 31 31 H 1.08998 * 109.58775 * 353.41835 * 10 9 7 32 32 H 1.09004 * 109.49722 * 65.31251 * 11 10 9 33 33 H 1.08996 * 109.50296 * 185.41368 * 11 10 9 34 34 H 1.09000 * 109.45514 * 181.38091 * 12 11 10 35 35 H 1.08998 * 109.45613 * 301.35697 * 12 11 10 36 36 H 0.97002 * 120.00592 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.58789 * 6.58385 * 23 9 7 38 38 H 1.09000 * 109.58842 * 246.16127 * 23 9 7 39 39 H 1.07997 * 120.45837 * 180.23349 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4365 1.3021 0.0005 5 7 4.0000 2.4954 0.0000 6 6 3.2609 3.5956 -0.0015 7 6 3.9341 4.9169 -0.0015 8 8 4.9774 5.0672 0.6028 9 7 3.3887 5.9510 -0.6719 10 6 2.1974 5.7555 -1.5094 11 6 2.4895 6.2904 -2.9148 12 6 2.9566 7.7445 -2.8161 13 6 4.2466 7.8130 -1.9954 14 1 5.0113 7.1962 -2.4675 15 6 4.7232 9.2409 -1.9260 16 1 4.1626 10.0219 -2.4183 17 6 5.8748 9.5504 -1.2340 18 7 6.5577 8.5995 -0.6350 19 14 6.4652 11.3206 -1.1474 20 1 5.5265 12.1928 -1.8977 21 1 6.5180 11.7558 0.2714 22 1 7.8205 11.4203 -1.7463 23 6 3.9743 7.2954 -0.5795 24 7 1.9364 3.5467 0.0027 25 6 1.3022 2.3895 -0.0020 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.0447 0.4096 0.0005 30 1 1.3555 6.2983 -1.0796 31 1 1.9600 4.6932 -1.5647 32 1 3.2708 5.6879 -3.3782 33 1 1.5837 6.2395 -3.5190 34 1 3.1416 8.1351 -3.8167 35 1 2.1850 8.3414 -2.3300 36 1 7.3682 8.8171 -0.1485 37 1 4.9094 7.2491 -0.0213 38 1 3.2773 7.9637 -0.0739 39 1 0.2227 2.3568 -0.0024 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597901298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:03 Heat of formation + Delta-G solvation = -9.989338 kcal Electronic energy + Delta-G solvation = -23358.849541 eV Core-core repulsion = 19881.720067 eV Total energy + Delta-G solvation = -3477.129474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57914 -39.48552 -38.48837 -36.63542 -34.19131 -33.24755 -31.84034 -31.25666 -29.71203 -28.20378 -25.64857 -25.04889 -24.62670 -23.49738 -21.77160 -20.47723 -18.86932 -18.50849 -18.29315 -17.23354 -16.50387 -16.18162 -15.69561 -15.11140 -14.94927 -14.70713 -14.34837 -13.95640 -13.87615 -13.59203 -13.26732 -12.83803 -12.63689 -12.49635 -12.17816 -11.92666 -11.84842 -11.63570 -11.21769 -10.96289 -10.75819 -10.44918 -10.29495 -10.18902 -9.86012 -9.48409 -9.36095 -9.10185 -8.94958 -8.86474 -8.40666 -7.73095 -5.95906 -4.05142 0.49314 0.81095 2.62330 2.94906 3.24358 3.34175 3.41517 3.44434 3.66189 3.94129 4.12977 4.33148 4.41892 4.47086 4.66226 4.70752 4.94478 5.03147 5.33722 5.38277 5.49220 5.60809 5.76713 5.79469 6.14165 6.25999 6.37003 6.45090 6.63194 6.70794 6.81152 6.88726 7.00698 7.15123 7.26816 7.64663 7.79620 7.90144 8.01435 8.22365 8.40930 8.76323 8.99312 9.60532 11.09347 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033338 B = 0.003810 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.676715 B = 7347.265377 C = 7924.343441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.301 6.301 3 C 0.031 3.969 4 C 0.123 3.877 5 N -0.434 5.434 6 C 0.259 3.741 7 C 0.577 3.423 8 O -0.505 6.505 9 N -0.583 5.583 10 C 0.112 3.888 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.039 3.961 14 H 0.030 0.970 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.879 5.879 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.113 3.887 24 N -0.450 5.450 25 C 0.059 3.941 26 H 0.107 0.893 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.182 0.818 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.263 0.737 37 H 0.124 0.876 38 H 0.048 0.952 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.951 -16.411 -0.250 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.211 6.211 3 C -0.019 4.019 4 C -0.047 4.047 5 N -0.148 5.148 6 C -0.010 4.010 7 C 0.359 3.641 8 O -0.377 6.377 9 N -0.315 5.315 10 C -0.011 4.011 11 C -0.175 4.175 12 C -0.148 4.148 13 C 0.020 3.980 14 H 0.048 0.952 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.516 5.516 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.006 4.006 24 N -0.167 5.167 25 C -0.109 4.109 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.198 0.802 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.066 0.934 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.656 -15.620 0.210 20.749 hybrid contribution -0.530 0.057 0.054 0.536 sum -14.187 -15.563 0.264 21.061 Atomic orbital electron populations 1.23220 0.77587 1.04820 1.01891 1.86077 1.22000 1.25083 1.87943 1.21180 0.95226 0.86749 0.98788 1.22891 0.89228 0.96407 0.96128 1.68377 1.39811 0.97571 1.09081 1.23237 0.86011 0.94768 0.97000 1.17176 0.84160 0.81357 0.81402 1.90839 1.20999 1.81976 1.43910 1.48318 1.28669 1.09967 1.44596 1.21830 0.87533 1.01111 0.90649 1.22014 1.00466 0.99170 0.95872 1.21630 0.99578 0.93083 1.00483 1.18983 0.91752 0.96664 0.90568 0.95164 1.21098 1.08642 0.92549 1.33589 0.92248 1.25068 0.96480 0.97204 0.95338 1.69898 1.16655 1.31618 1.33460 0.86535 0.78642 0.85061 0.77756 1.19815 1.20982 1.21032 1.22418 0.99678 0.76468 1.02038 1.68462 1.10343 1.28193 1.09683 1.23498 1.01270 0.86872 0.99279 0.87491 0.92102 0.92040 0.80150 0.91625 0.90324 0.92415 0.92237 0.93004 0.93063 0.92641 0.85830 0.93378 0.80834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.84 101.05 0.99 1.08 16 2 O -0.30 -2.49 10.51 -18.94 -0.20 -2.69 16 3 C 0.03 0.33 6.75 -38.68 -0.26 0.07 16 4 C 0.12 1.52 11.28 -17.05 -0.19 1.33 16 5 N -0.43 -7.43 10.27 -11.03 -0.11 -7.55 16 6 C 0.26 4.72 6.76 -157.05 -1.06 3.66 16 7 C 0.58 12.92 7.59 -12.13 -0.09 12.82 16 8 O -0.50 -13.32 16.45 5.37 0.09 -13.23 16 9 N -0.58 -12.53 2.97 -173.72 -0.52 -13.05 16 10 C 0.11 1.93 5.80 -3.71 -0.02 1.91 16 11 C -0.14 -2.34 6.08 -26.61 -0.16 -2.50 16 12 C -0.11 -2.23 5.11 -26.68 -0.14 -2.37 16 13 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 14 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 15 C -0.52 -14.18 8.56 -34.45 -0.29 -14.47 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.88 -25.92 11.40 55.43 0.63 -25.29 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.11 2.81 5.41 -3.71 -0.02 2.79 16 24 N -0.45 -6.72 7.44 -11.03 -0.08 -6.80 16 25 C 0.06 0.63 10.31 -17.05 -0.18 0.46 16 26 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 28 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16 29 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.24 4.96 -51.93 -0.26 0.99 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.12 3.56 5.12 -51.93 -0.27 3.29 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.17 1.18 6.47 -52.49 -0.34 0.84 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -33.82 322.14 -7.09 -40.91 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.01 Total: -0.73 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -1.72 Total: 7.20 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.08 Total: -52.69 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.11 Total: -15.92 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.82 -7.09 -40.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.921 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds