Wall clock time and date at job start Tue Mar 31 2020 06:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35743 * 116.99775 * 2 1 4 4 C 1.39443 * 120.80476 * 179.97438 * 3 2 1 5 5 N 1.31962 * 119.08214 * 179.97438 * 4 3 2 6 6 C 1.32541 * 120.83294 * 359.97438 * 5 4 3 7 7 C 1.48297 * 119.10989 * 179.97438 * 6 5 4 8 8 O 1.21500 * 119.99950 * 325.02882 * 7 6 5 9 9 N 1.34768 * 119.99727 * 145.01986 * 7 6 5 10 10 C 1.46923 * 120.63496 * 354.24166 * 9 7 6 11 11 C 1.53187 * 108.77943 * 233.62864 * 10 9 7 12 12 C 1.53047 * 109.31120 * 305.36438 * 11 10 9 13 13 C 1.53043 * 109.53767 * 61.36429 * 12 11 10 14 14 H 1.09002 * 109.49578 * 58.58262 * 13 12 11 15 15 C 1.50694 * 109.49677 * 178.68296 * 13 12 11 16 16 H 1.08005 * 119.99871 * 359.97438 * 15 13 12 17 17 C 1.37870 * 120.00144 * 179.97438 * 15 13 12 18 18 N 1.31513 * 120.00276 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00091 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47304 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46863 * 120.00453 * 19 17 15 22 22 H 1.48504 * 109.47179 * 239.99784 * 19 17 15 23 23 C 1.46929 * 120.62938 * 174.26127 * 9 7 6 24 24 N 1.32538 * 121.77800 * 0.26763 * 6 5 4 25 25 C 1.31959 * 120.83730 * 359.46324 * 24 6 5 26 26 H 1.08999 * 109.47176 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47203 * 300.00039 * 1 2 3 28 28 H 1.09004 * 109.47249 * 60.00259 * 1 2 3 29 29 H 1.07998 * 120.46326 * 0.02562 * 4 3 2 30 30 H 1.09005 * 109.58787 * 113.84231 * 10 9 7 31 31 H 1.08998 * 109.58775 * 353.41835 * 10 9 7 32 32 H 1.09004 * 109.49722 * 65.31251 * 11 10 9 33 33 H 1.08996 * 109.50296 * 185.41368 * 11 10 9 34 34 H 1.09000 * 109.45514 * 181.38091 * 12 11 10 35 35 H 1.08998 * 109.45613 * 301.35697 * 12 11 10 36 36 H 0.97002 * 120.00592 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.58789 * 6.58385 * 23 9 7 38 38 H 1.09000 * 109.58842 * 246.16127 * 23 9 7 39 39 H 1.07997 * 120.45837 * 180.23349 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4365 1.3021 0.0005 5 7 4.0000 2.4954 0.0000 6 6 3.2609 3.5956 -0.0015 7 6 3.9341 4.9169 -0.0015 8 8 4.9774 5.0672 0.6028 9 7 3.3887 5.9510 -0.6719 10 6 2.1974 5.7555 -1.5094 11 6 2.4895 6.2904 -2.9148 12 6 2.9566 7.7445 -2.8161 13 6 4.2466 7.8130 -1.9954 14 1 5.0113 7.1962 -2.4675 15 6 4.7232 9.2409 -1.9260 16 1 4.1626 10.0219 -2.4183 17 6 5.8748 9.5504 -1.2340 18 7 6.5577 8.5995 -0.6350 19 14 6.4652 11.3206 -1.1474 20 1 5.5265 12.1928 -1.8977 21 1 6.5180 11.7558 0.2714 22 1 7.8205 11.4203 -1.7463 23 6 3.9743 7.2954 -0.5795 24 7 1.9364 3.5467 0.0027 25 6 1.3022 2.3895 -0.0020 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.0447 0.4096 0.0005 30 1 1.3555 6.2983 -1.0796 31 1 1.9600 4.6932 -1.5647 32 1 3.2708 5.6879 -3.3782 33 1 1.5837 6.2395 -3.5190 34 1 3.1416 8.1351 -3.8167 35 1 2.1850 8.3414 -2.3300 36 1 7.3682 8.8171 -0.1485 37 1 4.9094 7.2491 -0.0213 38 1 3.2773 7.9637 -0.0739 39 1 0.2227 2.3568 -0.0024 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597901298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:02 Heat of formation + Delta-G solvation = -34.320316 kcal Electronic energy + Delta-G solvation = -23359.904611 eV Core-core repulsion = 19881.720067 eV Total energy + Delta-G solvation = -3478.184545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.64023 -40.86817 -39.52027 -38.36803 -35.54583 -34.93343 -33.53493 -32.37350 -31.47279 -28.83138 -27.23721 -26.75720 -25.67064 -24.77949 -23.46613 -22.01534 -20.47035 -19.37196 -19.24880 -18.78866 -18.13560 -17.45065 -17.01279 -16.53893 -16.21286 -16.14313 -15.58531 -15.40065 -14.99911 -14.90573 -14.64330 -14.54894 -14.33141 -13.87900 -13.53389 -13.40870 -12.89728 -12.76461 -12.49223 -12.42544 -12.29631 -12.28139 -12.15288 -11.74988 -11.61759 -11.26911 -10.98077 -10.79719 -10.53019 -10.40189 -9.85913 -9.46712 -8.09224 -6.27231 -0.60065 -0.12139 1.41142 1.42872 1.49414 1.55409 1.72475 2.02805 2.43300 2.51391 2.87141 3.08021 3.17945 3.24505 3.63844 3.79105 4.08097 4.16509 4.32551 4.35344 4.42831 4.56501 4.61236 4.70719 4.78307 4.82105 4.83440 4.91933 5.07423 5.23827 5.25343 5.32911 5.52092 5.57049 5.61741 5.87691 5.97479 6.01869 6.31491 6.44425 6.75021 6.86095 7.10490 7.43288 8.94608 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033338 B = 0.003810 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.676715 B = 7347.265377 C = 7924.343441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.300 6.300 3 C 0.065 3.935 4 C 0.109 3.891 5 N -0.470 5.470 6 C 0.228 3.772 7 C 0.569 3.431 8 O -0.567 6.567 9 N -0.586 5.586 10 C 0.111 3.889 11 C -0.129 4.129 12 C -0.103 4.103 13 C 0.038 3.962 14 H -0.016 1.016 15 C -0.533 4.533 16 H 0.066 0.934 17 C 0.007 3.993 18 N -0.917 5.917 19 Si 0.961 3.039 20 H -0.258 1.258 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.126 3.874 24 N -0.452 5.452 25 C 0.063 3.937 26 H 0.130 0.870 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.208 0.792 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.042 0.958 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.260 0.740 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.869 -17.914 -1.167 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.209 6.209 3 C 0.013 3.987 4 C -0.059 4.059 5 N -0.185 5.185 6 C -0.040 4.040 7 C 0.353 3.647 8 O -0.445 6.445 9 N -0.317 5.317 10 C -0.011 4.011 11 C -0.167 4.167 12 C -0.141 4.141 13 C 0.019 3.981 14 H 0.003 0.997 15 C -0.571 4.571 16 H 0.084 0.916 17 C -0.192 4.192 18 N -0.555 5.555 19 Si 0.786 3.214 20 H -0.182 1.182 21 H -0.209 1.209 22 H -0.210 1.210 23 C 0.004 3.996 24 N -0.170 5.170 25 C -0.104 4.104 26 H 0.148 0.852 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.225 0.775 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -17.642 -17.149 -0.744 24.615 hybrid contribution 0.517 0.259 0.342 0.671 sum -17.125 -16.891 -0.403 24.057 Atomic orbital electron populations 1.23687 0.74832 1.07031 1.03451 1.86119 1.24668 1.23515 1.86623 1.21092 0.94593 0.87704 0.95313 1.23307 0.90943 0.95550 0.96136 1.68207 1.41348 0.98768 1.10196 1.22086 0.87204 0.92846 1.01818 1.17845 0.83601 0.83106 0.80146 1.90776 1.23856 1.83493 1.46340 1.48331 1.29683 1.08673 1.45051 1.22128 0.86127 1.02872 0.89929 1.21984 1.01975 0.96313 0.96420 1.21517 0.97124 0.95850 0.99620 1.18921 0.93158 0.94857 0.91214 0.99748 1.21524 1.08756 0.93791 1.33055 0.91574 1.25950 0.96832 1.01392 0.95031 1.70113 1.16989 1.33926 1.34502 0.85460 0.78126 0.80048 0.77744 1.18194 1.20856 1.20996 1.21875 0.97908 0.78639 1.01181 1.68334 1.08559 1.30271 1.09833 1.24224 1.03087 0.85515 0.97618 0.85221 0.90613 0.90277 0.77524 0.89597 0.88276 0.93889 0.87491 0.92625 0.91838 0.93119 0.90433 0.93373 0.76126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.84 113.37 1.12 1.13 16 2 O -0.30 -3.60 10.51 -90.67 -0.95 -4.56 16 3 C 0.07 1.15 6.75 22.85 0.15 1.30 16 4 C 0.11 2.54 11.28 84.96 0.96 3.49 16 5 N -0.47 -16.39 10.27 -188.81 -1.94 -18.33 16 6 C 0.23 8.45 6.76 137.56 0.93 9.38 16 7 C 0.57 26.98 7.59 86.92 0.66 27.64 16 8 O -0.57 -32.68 16.45 -3.72 -0.06 -32.74 16 9 N -0.59 -26.17 2.97 -821.81 -2.44 -28.61 16 10 C 0.11 3.66 5.80 86.36 0.50 4.17 16 11 C -0.13 -4.17 6.08 30.67 0.19 -3.98 16 12 C -0.10 -4.12 5.11 30.62 0.16 -3.97 16 13 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 14 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 15 C -0.53 -29.86 8.56 25.60 0.22 -29.65 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C 0.01 0.41 5.30 84.65 0.45 0.86 16 18 N -0.92 -57.39 11.40 21.44 0.24 -57.15 16 19 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 23 C 0.13 6.58 5.41 86.36 0.47 7.05 16 24 N -0.45 -12.66 7.44 -188.81 -1.41 -14.06 16 25 C 0.06 1.12 10.31 84.96 0.88 1.99 16 26 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.08 0.09 7.71 -2.39 -0.02 0.07 16 28 H 0.08 0.05 7.71 -2.38 -0.02 0.03 16 29 H 0.21 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.10 2.92 4.96 -2.39 -0.01 2.91 16 32 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 33 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.08 4.85 5.12 -2.39 -0.01 4.83 16 38 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.22 1.65 6.47 -2.91 -0.02 1.63 16 Total: -1.00 -82.19 322.14 3.18 -79.01 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.07 Total: 7.97 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 6.65 Total: 21.37 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -5.54 Total: -118.15 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.01 Total: -37.29 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -82.19 3.18 -79.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.688 kcal (2) G-P(sol) polarization free energy of solvation -82.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds