Wall clock time and date at job start Tue Mar 31 2020 06:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35518 * 116.99707 * 2 1 4 4 C 1.39353 * 120.02720 * 179.97438 * 3 2 1 5 5 C 1.38416 * 118.03645 * 179.75047 * 4 3 2 6 6 C 1.39977 * 117.96673 * 0.52874 * 5 4 3 7 7 C 1.47941 * 120.11417 * 179.74103 * 6 5 4 8 8 O 1.21542 * 120.00012 * 351.98024 * 7 6 5 9 9 N 1.34783 * 119.99838 * 171.71332 * 7 6 5 10 10 C 1.46929 * 120.62878 * 349.56053 * 9 7 6 11 11 C 1.52760 * 109.00518 * 233.58518 * 10 9 7 12 12 C 1.53045 * 109.38631 * 305.59205 * 11 10 9 13 13 C 1.53038 * 109.53718 * 61.23812 * 12 11 10 14 14 H 1.08992 * 109.50093 * 58.59118 * 13 12 11 15 15 C 1.50698 * 109.49403 * 178.68752 * 13 12 11 16 16 H 1.07996 * 120.00512 * 5.66649 * 15 13 12 17 17 C 1.37879 * 120.00225 * 185.66306 * 15 13 12 18 18 N 1.31522 * 119.99682 * 355.51963 * 17 15 13 19 19 Si 1.86798 * 120.00306 * 175.51773 * 17 15 13 20 20 H 1.48497 * 109.47038 * 95.00321 * 19 17 15 21 21 H 1.48502 * 109.46870 * 214.99910 * 19 17 15 22 22 H 1.48494 * 109.46965 * 334.99757 * 19 17 15 23 23 C 1.46918 * 120.63005 * 169.84059 * 9 7 6 24 24 N 1.32750 * 119.76960 * 359.46102 * 6 5 4 25 25 N 1.28360 * 122.08540 * 0.27766 * 24 6 5 26 26 H 1.08993 * 109.47214 * 299.99724 * 1 2 3 27 27 H 1.08997 * 109.46954 * 60.00418 * 1 2 3 28 28 H 1.09005 * 109.46422 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.98241 * 0.02562 * 4 3 2 30 30 H 1.08000 * 121.01556 * 180.26753 * 5 4 3 31 31 H 1.08994 * 109.58510 * 353.41497 * 10 9 7 32 32 H 1.08995 * 109.58719 * 113.84639 * 10 9 7 33 33 H 1.09002 * 109.56836 * 185.55327 * 11 10 9 34 34 H 1.09008 * 109.38635 * 65.51674 * 11 10 9 35 35 H 1.09002 * 109.45105 * 301.21865 * 12 11 10 36 36 H 1.08996 * 109.44755 * 181.25440 * 12 11 10 37 37 H 0.96997 * 120.00205 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.58842 * 246.15621 * 23 9 7 39 39 H 1.09003 * 109.58915 * 6.58331 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4358 1.2812 0.0005 5 6 4.0209 2.5356 -0.0048 6 6 3.1780 3.6531 0.0010 7 6 3.7528 5.0163 0.0014 8 8 4.9499 5.1711 0.1437 9 7 2.9495 6.0863 -0.1613 10 6 1.5473 5.9152 -0.5656 11 6 1.2773 6.7733 -1.8002 12 6 1.6756 8.2220 -1.5089 13 6 3.1711 8.2876 -1.1907 14 1 3.7400 7.8961 -2.0339 15 6 3.5688 9.7186 -0.9357 16 1 2.8148 10.4912 -0.9040 17 6 4.8952 10.0416 -0.7427 18 7 5.8030 9.0912 -0.6932 19 14 5.4030 11.8290 -0.5515 20 1 5.4769 12.1709 0.8917 21 1 6.7336 12.0353 -1.1778 22 1 4.4023 12.7017 -1.2164 23 6 3.4610 7.4463 0.0563 24 7 1.8611 3.4855 0.0004 25 7 1.3221 2.3205 0.0000 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 4.0399 0.3860 0.0005 30 1 5.0950 2.6486 -0.0090 31 1 1.3606 4.8678 -0.8024 32 1 0.8919 6.2310 0.2460 33 1 0.2171 6.7306 -2.0497 34 1 1.8637 6.3963 -2.6382 35 1 1.1062 8.5905 -0.6556 36 1 1.4626 8.8394 -2.3816 37 1 6.7362 9.3184 -0.5578 38 1 2.9649 7.8896 0.9197 39 1 4.5365 7.4088 0.2298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:02 Heat of formation + Delta-G solvation = 1.571929 kcal Electronic energy + Delta-G solvation = -23355.832293 eV Core-core repulsion = 19879.204153 eV Total energy + Delta-G solvation = -3476.628140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49201 -39.49177 -38.39800 -36.73269 -33.62387 -33.26235 -32.12788 -31.46287 -29.69186 -27.90955 -25.89812 -25.06278 -24.32213 -23.59594 -21.73570 -20.47326 -19.01607 -18.61481 -18.06308 -16.92245 -16.59208 -16.13297 -15.39661 -15.03705 -14.80205 -14.54933 -14.41281 -14.09782 -13.92473 -13.61722 -13.15152 -12.88560 -12.60978 -12.33460 -12.18722 -11.94654 -11.80371 -11.70370 -10.97802 -10.75939 -10.49416 -10.45820 -10.34340 -10.21211 -9.89141 -9.60027 -9.47335 -9.25494 -9.03043 -8.79955 -8.45451 -7.72833 -5.98444 -4.06329 0.46835 0.58131 2.58188 2.87093 3.31558 3.39465 3.42043 3.46561 3.72766 3.87917 4.14879 4.44603 4.59471 4.69662 4.81938 4.94910 4.98997 5.22475 5.32160 5.34426 5.56488 5.66019 5.70430 5.84656 5.93837 6.26803 6.39579 6.49253 6.66826 6.70549 6.75656 6.91206 7.02417 7.15074 7.27305 7.64470 7.87434 7.99953 8.17612 8.33813 8.40443 8.70815 8.98689 9.59144 11.07515 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.003819 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.687714 B = 7330.656494 C = 8025.411115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.300 6.300 3 C 0.270 3.730 4 C -0.140 4.140 5 C -0.033 4.033 6 C 0.007 3.993 7 C 0.562 3.438 8 O -0.526 6.526 9 N -0.581 5.581 10 C 0.086 3.914 11 C -0.135 4.135 12 C -0.111 4.111 13 C 0.040 3.960 14 H 0.032 0.968 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.112 3.888 24 N -0.165 5.165 25 N -0.308 5.308 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.162 0.838 30 H 0.170 0.830 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.263 0.737 38 H 0.047 0.953 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 -17.448 1.032 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.204 6.204 3 C 0.086 3.914 4 C -0.169 4.169 5 C -0.062 4.062 6 C -0.141 4.141 7 C 0.345 3.655 8 O -0.401 6.401 9 N -0.311 5.311 10 C -0.038 4.038 11 C -0.173 4.173 12 C -0.149 4.149 13 C 0.021 3.979 14 H 0.050 0.950 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.007 4.007 24 N -0.013 5.013 25 N -0.166 5.166 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.179 0.821 30 H 0.188 0.812 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.551 -17.024 1.144 19.554 hybrid contribution 1.356 0.397 0.105 1.417 sum -8.195 -16.627 1.249 18.579 Atomic orbital electron populations 1.23034 0.76396 1.03550 1.03155 1.86197 1.23556 1.23471 1.87162 1.21621 0.91049 0.87074 0.91675 1.21515 0.92169 0.99833 1.03422 1.22348 1.03201 0.89988 0.90630 1.23195 0.91678 0.97197 1.02069 1.17502 0.86240 0.82579 0.79173 1.90831 1.13620 1.84916 1.50783 1.48400 1.11253 1.07511 1.63980 1.22471 0.81715 1.02860 0.96717 1.21909 1.00055 0.97705 0.97636 1.21651 0.99612 0.93423 1.00240 1.18972 0.90123 0.94995 0.93779 0.94969 1.21083 0.92419 0.92388 1.49991 0.92341 1.25064 0.96809 0.97220 0.94938 1.69929 1.01620 1.31595 1.48535 0.86588 0.78002 0.85337 0.78137 1.20749 1.21194 1.19883 1.22409 1.02728 0.76343 0.99258 1.73185 1.10085 1.12235 1.05746 1.73224 1.31942 0.94335 1.17051 0.91713 0.91686 0.88113 0.82083 0.81208 0.86434 0.92000 0.92141 0.92570 0.93206 0.93075 0.92718 0.93434 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.39 101.05 1.05 1.30 16 2 O -0.30 -3.03 10.48 -18.25 -0.19 -3.22 16 3 C 0.27 3.22 7.57 -16.77 -0.13 3.09 16 4 C -0.14 -1.48 10.14 -39.10 -0.40 -1.87 16 5 C -0.03 -0.43 9.71 -38.86 -0.38 -0.80 16 6 C 0.01 0.11 6.65 -82.84 -0.55 -0.44 16 7 C 0.56 11.47 7.63 -12.28 -0.09 11.38 16 8 O -0.53 -12.39 15.86 5.33 0.08 -12.30 16 9 N -0.58 -12.11 2.98 -174.11 -0.52 -12.63 16 10 C 0.09 1.51 5.80 -3.93 -0.02 1.49 16 11 C -0.13 -2.35 6.06 -26.83 -0.16 -2.52 16 12 C -0.11 -2.29 5.11 -26.69 -0.14 -2.42 16 13 C 0.04 1.01 2.18 -91.65 -0.20 0.81 16 14 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.52 -14.14 8.49 -34.44 -0.29 -14.43 16 16 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 17 C 0.06 1.74 5.36 -17.82 -0.10 1.64 16 18 N -0.88 -25.60 11.65 55.43 0.65 -24.95 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 23 C 0.11 2.73 5.49 -3.71 -0.02 2.71 16 24 N -0.16 -2.57 7.37 33.32 0.25 -2.33 16 25 N -0.31 -4.27 10.40 30.54 0.32 -3.95 16 26 H 0.06 0.49 8.11 -51.93 -0.42 0.06 16 27 H 0.06 0.49 8.11 -51.93 -0.42 0.06 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.17 1.96 7.73 -52.49 -0.41 1.56 16 31 H 0.12 1.95 4.18 -114.44 -0.48 1.47 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.12 3.28 5.41 -51.93 -0.28 3.00 16 LS Contribution 323.01 15.07 4.87 4.87 Total: -1.00 -31.61 323.01 -6.35 -37.96 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.35 Total: 0.40 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.43 Total: -0.08 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.69 Total: -43.86 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.11 Total: -15.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.61 -6.35 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.529 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds