Wall clock time and date at job start Tue Mar 31 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35518 * 116.99707 * 2 1 4 4 C 1.39353 * 120.02720 * 179.97438 * 3 2 1 5 5 C 1.38416 * 118.03645 * 179.75047 * 4 3 2 6 6 C 1.39977 * 117.96673 * 0.52874 * 5 4 3 7 7 C 1.47941 * 120.11417 * 179.74103 * 6 5 4 8 8 O 1.21542 * 120.00012 * 351.98024 * 7 6 5 9 9 N 1.34783 * 119.99838 * 171.71332 * 7 6 5 10 10 C 1.46929 * 120.62878 * 349.56053 * 9 7 6 11 11 C 1.52760 * 109.00518 * 233.58518 * 10 9 7 12 12 C 1.53045 * 109.38631 * 305.59205 * 11 10 9 13 13 C 1.53038 * 109.53718 * 61.23812 * 12 11 10 14 14 H 1.08992 * 109.50093 * 58.59118 * 13 12 11 15 15 C 1.50698 * 109.49403 * 178.68752 * 13 12 11 16 16 H 1.07996 * 120.00512 * 5.66649 * 15 13 12 17 17 C 1.37879 * 120.00225 * 185.66306 * 15 13 12 18 18 N 1.31522 * 119.99682 * 355.51963 * 17 15 13 19 19 Si 1.86798 * 120.00306 * 175.51773 * 17 15 13 20 20 H 1.48497 * 109.47038 * 95.00321 * 19 17 15 21 21 H 1.48502 * 109.46870 * 214.99910 * 19 17 15 22 22 H 1.48494 * 109.46965 * 334.99757 * 19 17 15 23 23 C 1.46918 * 120.63005 * 169.84059 * 9 7 6 24 24 N 1.32750 * 119.76960 * 359.46102 * 6 5 4 25 25 N 1.28360 * 122.08540 * 0.27766 * 24 6 5 26 26 H 1.08993 * 109.47214 * 299.99724 * 1 2 3 27 27 H 1.08997 * 109.46954 * 60.00418 * 1 2 3 28 28 H 1.09005 * 109.46422 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.98241 * 0.02562 * 4 3 2 30 30 H 1.08000 * 121.01556 * 180.26753 * 5 4 3 31 31 H 1.08994 * 109.58510 * 353.41497 * 10 9 7 32 32 H 1.08995 * 109.58719 * 113.84639 * 10 9 7 33 33 H 1.09002 * 109.56836 * 185.55327 * 11 10 9 34 34 H 1.09008 * 109.38635 * 65.51674 * 11 10 9 35 35 H 1.09002 * 109.45105 * 301.21865 * 12 11 10 36 36 H 1.08996 * 109.44755 * 181.25440 * 12 11 10 37 37 H 0.96997 * 120.00205 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.58842 * 246.15621 * 23 9 7 39 39 H 1.09003 * 109.58915 * 6.58331 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4358 1.2812 0.0005 5 6 4.0209 2.5356 -0.0048 6 6 3.1780 3.6531 0.0010 7 6 3.7528 5.0163 0.0014 8 8 4.9499 5.1711 0.1437 9 7 2.9495 6.0863 -0.1613 10 6 1.5473 5.9152 -0.5656 11 6 1.2773 6.7733 -1.8002 12 6 1.6756 8.2220 -1.5089 13 6 3.1711 8.2876 -1.1907 14 1 3.7400 7.8961 -2.0339 15 6 3.5688 9.7186 -0.9357 16 1 2.8148 10.4912 -0.9040 17 6 4.8952 10.0416 -0.7427 18 7 5.8030 9.0912 -0.6932 19 14 5.4030 11.8290 -0.5515 20 1 5.4769 12.1709 0.8917 21 1 6.7336 12.0353 -1.1778 22 1 4.4023 12.7017 -1.2164 23 6 3.4610 7.4463 0.0563 24 7 1.8611 3.4855 0.0004 25 7 1.3221 2.3205 0.0000 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 4.0399 0.3860 0.0005 30 1 5.0950 2.6486 -0.0090 31 1 1.3606 4.8678 -0.8024 32 1 0.8919 6.2310 0.2460 33 1 0.2171 6.7306 -2.0497 34 1 1.8637 6.3963 -2.6382 35 1 1.1062 8.5905 -0.6556 36 1 1.4626 8.8394 -2.3816 37 1 6.7362 9.3184 -0.5578 38 1 2.9649 7.8896 0.9197 39 1 4.5365 7.4088 0.2298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:01 Heat of formation + Delta-G solvation = -21.002141 kcal Electronic energy + Delta-G solvation = -23356.811178 eV Core-core repulsion = 19879.204153 eV Total energy + Delta-G solvation = -3477.607025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.57847 -40.90041 -39.43527 -38.41791 -35.37480 -34.40981 -33.71448 -32.82488 -31.47090 -28.64995 -27.36765 -26.89540 -25.51753 -24.81441 -23.43338 -22.03120 -20.48411 -19.66094 -19.22861 -18.56177 -17.92085 -17.48045 -16.98866 -16.51612 -16.26926 -15.64532 -15.62645 -15.50121 -15.11630 -14.94423 -14.60127 -14.54541 -14.33619 -13.93449 -13.52180 -13.26738 -12.89297 -12.86960 -12.64106 -12.49955 -12.30941 -12.14898 -11.77250 -11.64081 -11.43985 -11.22628 -10.95024 -10.93700 -10.58252 -10.46003 -10.23565 -9.44800 -8.10193 -6.26340 -0.63741 -0.40595 1.42092 1.42805 1.54307 1.56690 1.72000 2.01268 2.43589 2.45370 2.75108 3.08762 3.18686 3.48894 3.72635 3.79512 4.17438 4.21966 4.26673 4.38282 4.42557 4.44625 4.62871 4.69998 4.75178 4.79728 4.86112 4.88331 5.05591 5.09891 5.25371 5.30453 5.34478 5.55919 5.62491 5.86511 5.88817 5.96417 6.33084 6.52517 6.85963 7.04363 7.30514 7.43437 8.94501 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.003819 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.687714 B = 7330.656494 C = 8025.411115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.295 6.295 3 C 0.273 3.727 4 C -0.115 4.115 5 C -0.036 4.036 6 C -0.012 4.012 7 C 0.557 3.443 8 O -0.570 6.570 9 N -0.589 5.589 10 C 0.086 3.914 11 C -0.127 4.127 12 C -0.105 4.105 13 C 0.039 3.961 14 H -0.010 1.010 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.010 3.990 18 N -0.914 5.914 19 Si 0.959 3.041 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.263 1.263 23 C 0.126 3.874 24 N -0.175 5.175 25 N -0.317 5.317 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.134 0.866 29 H 0.204 0.796 30 H 0.178 0.822 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.260 0.740 38 H 0.045 0.955 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.900 -19.287 1.039 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.199 6.199 3 C 0.089 3.911 4 C -0.144 4.144 5 C -0.064 4.064 6 C -0.160 4.160 7 C 0.343 3.657 8 O -0.449 6.449 9 N -0.319 5.319 10 C -0.036 4.036 11 C -0.165 4.165 12 C -0.143 4.143 13 C 0.020 3.980 14 H 0.008 0.992 15 C -0.574 4.574 16 H 0.080 0.920 17 C -0.189 4.189 18 N -0.553 5.553 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.187 1.187 23 C 0.004 3.996 24 N -0.022 5.022 25 N -0.175 5.175 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.152 0.848 29 H 0.221 0.779 30 H 0.196 0.804 31 H 0.152 0.848 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.512 -18.888 1.143 22.149 hybrid contribution 1.859 0.782 0.106 2.020 sum -9.653 -18.106 1.249 20.556 Atomic orbital electron populations 1.23335 0.74756 1.05770 1.03005 1.86237 1.25127 1.22083 1.86426 1.21867 0.91761 0.87166 0.90297 1.21885 0.91915 1.00104 1.00532 1.22447 1.03383 0.89916 0.90614 1.22590 0.92691 0.95457 1.05247 1.18066 0.85715 0.84113 0.77788 1.90790 1.15557 1.85983 1.52575 1.48413 1.12757 1.06384 1.64333 1.22711 0.79769 1.04069 0.97064 1.21882 1.02255 0.95219 0.97188 1.21541 0.96248 0.95896 1.00610 1.18900 0.92750 0.93954 0.92391 0.99209 1.21488 0.92755 0.93679 1.49489 0.91953 1.25905 0.96935 1.01418 0.94692 1.70113 1.01702 1.33727 1.49713 0.85531 0.77567 0.80251 0.78240 1.20157 1.21206 1.18742 1.21852 1.00317 0.78617 0.98780 1.72995 1.09590 1.13497 1.06166 1.73146 1.32070 0.94424 1.17832 0.91895 0.91791 0.84812 0.77922 0.80439 0.84815 0.90774 0.88097 0.93629 0.92337 0.92847 0.93051 0.93704 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.39 113.37 1.18 1.47 16 2 O -0.30 -4.89 10.48 -88.21 -0.92 -5.82 16 3 C 0.27 5.68 7.57 84.83 0.64 6.33 16 4 C -0.12 -2.06 10.14 22.58 0.23 -1.83 16 5 C -0.04 -0.87 9.71 22.73 0.22 -0.65 16 6 C -0.01 -0.38 6.65 42.00 0.28 -0.10 16 7 C 0.56 23.65 7.63 86.81 0.66 24.32 16 8 O -0.57 -28.49 15.86 -3.85 -0.06 -28.56 16 9 N -0.59 -25.34 2.98 -823.04 -2.45 -27.80 16 10 C 0.09 2.95 5.80 86.22 0.50 3.45 16 11 C -0.13 -4.29 6.06 30.53 0.19 -4.11 16 12 C -0.11 -4.29 5.11 30.62 0.16 -4.14 16 13 C 0.04 2.04 2.18 -11.46 -0.03 2.01 16 14 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 15 C -0.54 -29.90 8.49 25.60 0.22 -29.68 16 16 H 0.06 3.35 7.75 -2.91 -0.02 3.32 16 17 C 0.01 0.57 5.36 84.65 0.45 1.03 16 18 N -0.91 -55.76 11.65 21.45 0.25 -55.51 16 19 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 C 0.13 6.44 5.49 86.37 0.47 6.92 16 24 N -0.17 -5.24 7.37 -48.50 -0.36 -5.59 16 25 N -0.32 -8.09 10.40 -170.01 -1.77 -9.86 16 26 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 28 H 0.13 0.65 8.14 -2.38 -0.02 0.64 16 29 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.18 4.00 7.73 -2.91 -0.02 3.98 16 31 H 0.14 4.27 4.18 -83.24 -0.35 3.92 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.08 4.54 5.41 -2.39 -0.01 4.53 16 Total: -1.00 -72.67 323.01 2.61 -70.05 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.73 Total: 11.52 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.17 Total: 5.02 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -4.33 Total: -98.75 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.99 Total: -34.37 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -72.67 2.61 -70.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.052 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds