Wall clock time and date at job start Tue Mar 31 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39833 * 120.00203 * 2 1 4 4 C 1.38920 * 120.00121 * 179.97438 * 3 2 1 5 5 C 1.38029 * 119.99903 * 180.24954 * 4 3 2 6 6 C 1.38930 * 120.00110 * 359.51790 * 5 4 3 7 7 N 1.39885 * 119.99901 * 180.20871 * 6 5 4 8 8 C 1.34779 * 119.99640 * 213.66529 * 7 6 5 9 9 O 1.21397 * 120.00240 * 5.27244 * 8 7 6 10 10 C 1.49322 * 119.99876 * 185.27515 * 8 7 6 11 11 O 1.21358 * 120.00410 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99891 * 179.97438 * 10 8 7 13 13 C 1.46499 * 120.00023 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.47250 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.46899 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00519 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99526 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99717 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47549 * 60.00148 * 19 17 15 21 21 H 1.48505 * 109.47148 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46957 * 299.99835 * 19 17 15 23 23 C 1.38929 * 119.99331 * 0.50109 * 6 5 4 24 24 C 1.38019 * 120.00335 * 359.73097 * 23 6 5 25 25 H 1.08999 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47583 * 300.01063 * 1 2 3 27 27 H 1.09003 * 109.46795 * 60.00796 * 1 2 3 28 28 H 0.96999 * 119.99983 * 179.97438 * 2 1 3 29 29 H 1.07998 * 119.99895 * 359.97373 * 4 3 2 30 30 H 1.07998 * 119.99788 * 179.72112 * 5 4 3 31 31 H 0.97002 * 120.00578 * 33.66082 * 7 6 5 32 32 H 0.96996 * 120.00244 * 0.02562 * 12 10 8 33 33 H 1.09009 * 109.47015 * 300.00151 * 13 12 10 34 34 H 1.08998 * 109.47199 * 60.00391 * 13 12 10 35 35 H 1.08995 * 109.46632 * 299.99671 * 14 13 12 36 36 H 1.08998 * 109.47159 * 59.99804 * 14 13 12 37 37 H 0.97004 * 119.99953 * 179.97438 * 18 17 15 38 38 H 1.08009 * 119.99688 * 179.70175 * 23 6 5 39 39 H 1.08001 * 120.00346 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1642 1.2110 0.0000 4 6 3.5534 1.2109 0.0005 5 6 4.2435 2.4063 0.0057 6 6 3.5489 3.6095 0.0003 7 7 4.2484 4.8209 0.0012 8 6 3.7411 5.8915 0.6439 9 8 2.7268 5.7802 1.3015 10 6 4.4268 7.2144 0.5471 11 8 5.4405 7.3258 -0.1107 12 7 3.9192 8.2851 1.1894 13 6 4.5916 9.5832 1.0940 14 6 3.8165 10.6202 1.9094 15 6 4.5085 11.9553 1.8117 16 1 5.4106 12.0545 1.2263 17 6 3.9893 13.0506 2.4689 18 7 2.8905 12.9300 3.1814 19 14 4.8467 14.7057 2.3473 20 1 4.9001 15.1324 0.9259 21 1 4.0945 15.7123 3.1388 22 1 6.2275 14.5883 2.8811 23 6 2.1597 3.6094 0.0002 24 6 1.4696 2.4141 -0.0002 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 1.9500 -0.8400 0.0004 29 1 4.0934 0.2756 0.0014 30 1 5.3235 2.4063 0.0107 31 1 5.0986 4.8905 -0.4607 32 1 3.1088 8.1962 1.7149 33 1 5.6052 9.4970 1.4859 34 1 4.6307 9.8962 0.0507 35 1 2.8029 10.7064 1.5179 36 1 3.7776 10.3070 2.9527 37 1 2.5254 13.7004 3.6440 38 1 1.6196 4.5448 0.0008 39 1 0.3896 2.4140 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599873905.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:24 Heat of formation + Delta-G solvation = -43.302349 kcal Electronic energy + Delta-G solvation = -21598.839806 eV Core-core repulsion = 18120.265771 eV Total energy + Delta-G solvation = -3478.574035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89807 -39.50180 -38.25532 -36.25602 -35.14667 -33.90581 -32.84412 -31.16033 -29.86001 -29.18865 -26.41367 -25.36828 -23.89791 -22.90432 -21.52999 -20.98832 -20.13438 -18.60912 -17.68583 -17.41012 -16.55190 -16.11034 -15.92204 -15.72579 -14.86863 -14.64212 -14.57711 -14.50094 -14.29839 -13.93377 -13.57802 -13.43395 -13.02292 -12.85201 -12.71083 -12.39484 -12.31822 -11.56231 -11.34311 -11.23012 -11.04924 -10.85806 -10.68563 -10.39644 -9.81087 -9.52067 -9.43564 -9.23594 -9.08243 -8.71654 -8.41864 -7.38463 -6.10049 -4.13852 1.10965 1.25985 1.77077 2.51166 3.17160 3.30817 3.35019 3.35175 3.37735 3.74578 3.86010 4.40034 4.64598 4.72291 4.78447 4.81580 5.10714 5.18970 5.26718 5.27647 5.34833 5.37481 5.74102 5.87653 6.06910 6.16540 6.22637 6.23083 6.33469 6.57192 6.63589 6.68110 7.03627 7.09736 7.39199 7.46065 7.57494 7.65353 7.86842 7.89835 8.19420 8.31578 8.91500 9.50973 11.01359 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.041331 B = 0.002323 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.299046 B =12050.961768 C =12615.258074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.756 5.756 3 C 0.198 3.802 4 C -0.177 4.177 5 C -0.092 4.092 6 C 0.087 3.913 7 N -0.645 5.645 8 C 0.506 3.494 9 O -0.504 6.504 10 C 0.500 3.500 11 O -0.532 6.532 12 N -0.684 5.684 13 C 0.118 3.882 14 C 0.011 3.989 15 C -0.524 4.524 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.069 4.069 24 C -0.176 4.176 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.399 0.601 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.420 0.580 32 H 0.411 0.589 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.135 0.865 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 -26.613 -7.060 27.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.386 5.386 3 C 0.096 3.904 4 C -0.200 4.200 5 C -0.112 4.112 6 C -0.008 4.008 7 N -0.292 5.292 8 C 0.288 3.712 9 O -0.378 6.378 10 C 0.279 3.721 11 O -0.410 6.410 12 N -0.335 5.335 13 C -0.003 4.003 14 C -0.026 4.026 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.090 4.090 24 C -0.199 4.199 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.233 0.767 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.258 0.742 32 H 0.247 0.753 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.153 0.847 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.856 -26.365 -6.932 27.411 hybrid contribution 0.567 0.592 0.074 0.823 sum -2.289 -25.773 -6.858 26.768 Atomic orbital electron populations 1.21519 0.80273 1.02197 1.01220 1.44408 1.05599 1.05167 1.83448 1.17858 0.91102 0.86322 0.95146 1.20328 0.91839 0.97901 1.09924 1.20646 0.99638 0.90453 1.00508 1.17526 0.91420 0.84631 1.07199 1.43096 1.25004 1.08580 1.52493 1.20575 0.85311 0.85797 0.79485 1.90771 1.24039 1.84782 1.38215 1.19801 0.85393 0.85141 0.81792 1.90742 1.24278 1.85108 1.40823 1.46231 1.29397 1.09513 1.48356 1.21960 0.96891 0.79802 1.01666 1.19354 0.95847 0.92253 0.95183 1.20970 1.10747 0.93308 1.31257 0.92197 1.25005 0.94972 0.99296 0.95018 1.69946 1.20565 1.30928 1.31616 0.86549 0.79577 0.83037 0.78219 1.20096 1.21239 1.20103 1.20957 0.92391 0.98681 0.96944 1.20516 0.99700 0.90458 1.09216 0.91022 0.92924 0.92982 0.76737 0.85854 0.85488 0.74231 0.75326 0.91781 0.91776 0.95646 0.95640 0.92705 0.84680 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 9.94 59.85 0.59 1.08 16 2 N -0.76 -5.10 5.89 -65.35 -0.39 -5.49 16 3 C 0.20 1.85 6.66 -83.70 -0.56 1.30 16 4 C -0.18 -1.56 9.89 -39.41 -0.39 -1.95 16 5 C -0.09 -0.90 9.96 -39.40 -0.39 -1.29 16 6 C 0.09 1.05 6.28 -83.67 -0.53 0.52 16 7 N -0.64 -8.07 5.33 -10.26 -0.05 -8.13 16 8 C 0.51 7.70 7.62 -11.64 -0.09 7.61 16 9 O -0.50 -8.49 14.16 5.46 0.08 -8.41 16 10 C 0.50 8.55 7.88 -11.64 -0.09 8.46 16 11 O -0.53 -9.96 16.48 5.49 0.09 -9.87 16 12 N -0.68 -12.37 5.55 -60.77 -0.34 -12.70 16 13 C 0.12 2.46 5.61 -4.04 -0.02 2.43 16 14 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 15 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 19 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.07 -0.86 8.65 -39.41 -0.34 -1.20 16 24 C -0.18 -1.86 9.30 -39.41 -0.37 -2.23 16 25 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.05 0.30 7.95 -51.93 -0.41 -0.12 16 27 H 0.05 0.27 7.95 -51.93 -0.41 -0.14 16 28 H 0.40 1.91 8.84 -40.82 -0.36 1.55 16 29 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.42 4.52 8.30 -40.82 -0.34 4.18 16 32 H 0.41 7.06 7.94 -40.82 -0.32 6.74 16 33 H 0.06 1.35 8.14 -51.92 -0.42 0.92 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.14 1.83 6.41 -52.48 -0.34 1.50 16 39 H 0.12 1.13 6.72 -52.49 -0.35 0.78 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -31.99 339.99 -7.54 -39.53 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.04 Total: 7.33 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.73 Total: 1.73 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.04 Total: -51.66 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.17 Total: -18.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.99 -7.54 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599873905.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.773 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds