Wall clock time and date at job start Tue Mar 31 2020 06:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39833 * 120.00203 * 2 1 4 4 C 1.38920 * 120.00121 * 179.97438 * 3 2 1 5 5 C 1.38029 * 119.99903 * 180.24954 * 4 3 2 6 6 C 1.38930 * 120.00110 * 359.51790 * 5 4 3 7 7 N 1.39885 * 119.99901 * 180.20871 * 6 5 4 8 8 C 1.34779 * 119.99640 * 213.66529 * 7 6 5 9 9 O 1.21397 * 120.00240 * 5.27244 * 8 7 6 10 10 C 1.49322 * 119.99876 * 185.27515 * 8 7 6 11 11 O 1.21358 * 120.00410 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99891 * 179.97438 * 10 8 7 13 13 C 1.46499 * 120.00023 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.47250 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.46899 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00519 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99526 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99717 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47549 * 60.00148 * 19 17 15 21 21 H 1.48505 * 109.47148 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46957 * 299.99835 * 19 17 15 23 23 C 1.38929 * 119.99331 * 0.50109 * 6 5 4 24 24 C 1.38019 * 120.00335 * 359.73097 * 23 6 5 25 25 H 1.08999 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47583 * 300.01063 * 1 2 3 27 27 H 1.09003 * 109.46795 * 60.00796 * 1 2 3 28 28 H 0.96999 * 119.99983 * 179.97438 * 2 1 3 29 29 H 1.07998 * 119.99895 * 359.97373 * 4 3 2 30 30 H 1.07998 * 119.99788 * 179.72112 * 5 4 3 31 31 H 0.97002 * 120.00578 * 33.66082 * 7 6 5 32 32 H 0.96996 * 120.00244 * 0.02562 * 12 10 8 33 33 H 1.09009 * 109.47015 * 300.00151 * 13 12 10 34 34 H 1.08998 * 109.47199 * 60.00391 * 13 12 10 35 35 H 1.08995 * 109.46632 * 299.99671 * 14 13 12 36 36 H 1.08998 * 109.47159 * 59.99804 * 14 13 12 37 37 H 0.97004 * 119.99953 * 179.97438 * 18 17 15 38 38 H 1.08009 * 119.99688 * 179.70175 * 23 6 5 39 39 H 1.08001 * 120.00346 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1642 1.2110 0.0000 4 6 3.5534 1.2109 0.0005 5 6 4.2435 2.4063 0.0057 6 6 3.5489 3.6095 0.0003 7 7 4.2484 4.8209 0.0012 8 6 3.7411 5.8915 0.6439 9 8 2.7268 5.7802 1.3015 10 6 4.4268 7.2144 0.5471 11 8 5.4405 7.3258 -0.1107 12 7 3.9192 8.2851 1.1894 13 6 4.5916 9.5832 1.0940 14 6 3.8165 10.6202 1.9094 15 6 4.5085 11.9553 1.8117 16 1 5.4106 12.0545 1.2263 17 6 3.9893 13.0506 2.4689 18 7 2.8905 12.9300 3.1814 19 14 4.8467 14.7057 2.3473 20 1 4.9001 15.1324 0.9259 21 1 4.0945 15.7123 3.1388 22 1 6.2275 14.5883 2.8811 23 6 2.1597 3.6094 0.0002 24 6 1.4696 2.4141 -0.0002 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 1.9500 -0.8400 0.0004 29 1 4.0934 0.2756 0.0014 30 1 5.3235 2.4063 0.0107 31 1 5.0986 4.8905 -0.4607 32 1 3.1088 8.1962 1.7149 33 1 5.6052 9.4970 1.4859 34 1 4.6307 9.8962 0.0507 35 1 2.8029 10.7064 1.5179 36 1 3.7776 10.3070 2.9527 37 1 2.5254 13.7004 3.6440 38 1 1.6196 4.5448 0.0008 39 1 0.3896 2.4140 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599873905.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:23 Heat of formation + Delta-G solvation = -66.724592 kcal Electronic energy + Delta-G solvation = -21599.855470 eV Core-core repulsion = 18120.265771 eV Total energy + Delta-G solvation = -3479.589699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.06128 -40.53668 -39.42963 -37.23304 -36.65268 -35.02308 -34.62789 -31.94713 -31.69708 -30.00740 -27.60389 -26.60345 -25.23231 -23.86893 -22.87126 -22.27327 -21.37762 -19.82806 -18.61637 -18.52919 -18.28375 -17.32436 -17.17123 -16.70572 -16.49302 -16.22640 -15.83450 -15.32565 -15.12542 -14.98766 -14.76367 -14.56100 -14.30488 -14.16675 -13.64974 -13.56484 -13.26512 -12.92719 -12.85913 -12.75408 -12.54297 -12.27353 -12.18988 -11.71217 -11.65023 -11.44925 -10.73703 -10.60966 -10.29995 -10.21710 -9.89512 -8.23071 -8.11419 -6.34387 0.02770 0.47785 0.72554 1.27565 1.43863 1.46001 1.54090 2.06834 2.39919 2.59428 2.68681 2.92532 3.11776 3.36521 3.95150 4.06030 4.38057 4.39646 4.43470 4.45236 4.52441 4.58249 4.69316 4.81135 4.93758 4.97222 5.05255 5.13544 5.27990 5.39150 5.43354 5.47397 5.54878 5.75235 5.81537 5.98707 6.12858 6.33698 6.38544 6.69728 6.79608 6.88084 6.91068 7.35042 8.88739 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.041331 B = 0.002323 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.299046 B =12050.961768 C =12615.258074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.748 5.748 3 C 0.201 3.799 4 C -0.176 4.176 5 C -0.084 4.084 6 C 0.056 3.944 7 N -0.626 5.626 8 C 0.511 3.489 9 O -0.526 6.526 10 C 0.505 3.495 11 O -0.546 6.546 12 N -0.686 5.686 13 C 0.137 3.863 14 C 0.018 3.982 15 C -0.545 4.545 16 H 0.066 0.934 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.267 1.267 23 C -0.086 4.086 24 C -0.190 4.190 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.411 0.589 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.428 0.572 32 H 0.415 0.585 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.007 0.993 36 H 0.007 0.993 37 H 0.265 0.735 38 H 0.114 0.886 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 -28.489 -7.719 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.378 5.378 3 C 0.096 3.904 4 C -0.199 4.199 5 C -0.105 4.105 6 C -0.038 4.038 7 N -0.273 5.273 8 C 0.292 3.708 9 O -0.401 6.401 10 C 0.286 3.714 11 O -0.424 6.424 12 N -0.338 5.338 13 C 0.015 3.985 14 C -0.019 4.019 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.107 4.107 24 C -0.213 4.213 25 H 0.116 0.884 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.247 0.753 29 H 0.171 0.829 30 H 0.168 0.832 31 H 0.268 0.732 32 H 0.251 0.749 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.865 -28.315 -7.618 29.381 hybrid contribution 0.202 0.981 0.247 1.032 sum -1.663 -27.334 -7.371 28.359 Atomic orbital electron populations 1.21667 0.79325 1.03863 1.00893 1.44518 1.06346 1.04814 1.82132 1.18028 0.91684 0.86778 0.93875 1.20686 0.91739 0.98765 1.08709 1.20923 1.00856 0.89717 0.98974 1.17720 0.91435 0.84886 1.09774 1.42955 1.24982 1.08167 1.51215 1.20095 0.85063 0.85578 0.80021 1.90770 1.24894 1.84904 1.39573 1.20068 0.84992 0.85566 0.80822 1.90727 1.24919 1.85501 1.41274 1.46058 1.29605 1.09063 1.49032 1.21511 0.96209 0.80125 1.00663 1.19177 0.95278 0.92846 0.94618 1.21423 1.11125 0.94580 1.31231 0.91610 1.25937 0.95640 1.03357 0.94576 1.70072 1.22058 1.32117 1.32527 0.85447 0.78592 0.78124 0.78566 1.19161 1.20903 1.19168 1.20911 0.92898 0.98615 0.98271 1.20606 1.00219 0.90537 1.09921 0.88419 0.93471 0.93106 0.75337 0.82878 0.83166 0.73240 0.74875 0.91831 0.91862 0.97417 0.97416 0.92574 0.86779 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 9.94 127.77 1.27 1.99 16 2 N -0.75 -8.15 5.89 -360.65 -2.13 -10.28 16 3 C 0.20 3.35 6.66 38.19 0.25 3.61 16 4 C -0.18 -2.62 9.89 22.38 0.22 -2.40 16 5 C -0.08 -1.46 9.96 22.39 0.22 -1.24 16 6 C 0.06 1.31 6.28 38.19 0.24 1.55 16 7 N -0.63 -15.43 5.33 -304.72 -1.62 -17.05 16 8 C 0.51 15.69 7.62 87.23 0.66 16.36 16 9 O -0.53 -18.17 14.16 -3.39 -0.05 -18.22 16 10 C 0.51 17.36 7.88 87.23 0.69 18.05 16 11 O -0.55 -20.23 16.48 -3.27 -0.05 -20.29 16 12 N -0.69 -25.25 5.55 -464.52 -2.58 -27.83 16 13 C 0.14 5.78 5.61 86.38 0.48 6.26 16 14 C 0.02 0.93 5.09 29.85 0.15 1.08 16 15 C -0.55 -30.15 9.11 25.60 0.23 -29.91 16 16 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 17 C 0.00 0.20 5.46 84.66 0.46 0.66 16 18 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 19 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 C -0.09 -2.18 8.65 22.38 0.19 -1.99 16 24 C -0.19 -3.93 9.30 22.38 0.21 -3.72 16 25 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.05 0.46 7.95 -2.39 -0.02 0.44 16 27 H 0.05 0.45 7.95 -2.39 -0.02 0.43 16 28 H 0.41 2.59 8.84 -92.71 -0.82 1.77 16 29 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.43 8.83 8.30 -92.71 -0.77 8.06 16 32 H 0.41 14.73 7.94 -92.71 -0.74 13.99 16 33 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.11 3.29 6.41 -2.91 -0.02 3.27 16 39 H 0.13 2.39 6.72 -2.91 -0.02 2.37 16 Total: -1.00 -68.66 339.99 -0.04 -68.70 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -1.22 Total: 23.95 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.29 Total: 10.31 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -6.04 Total: -109.95 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.10 Total: -38.50 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.66 -0.04 -68.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599873905.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.976 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds