Wall clock time and date at job start Tue Mar 31 2020 06:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39836 * 119.99860 * 2 1 4 4 C 1.38924 * 119.99827 * 179.97438 * 3 2 1 5 5 C 1.38029 * 119.99784 * 180.27894 * 4 3 2 6 6 C 1.38930 * 120.00001 * 359.51518 * 5 4 3 7 7 N 1.39887 * 119.99909 * 180.23986 * 6 5 4 8 8 C 1.34774 * 120.00082 * 144.84816 * 7 6 5 9 9 O 1.21401 * 119.99853 * 5.11058 * 8 7 6 10 10 C 1.49324 * 120.00180 * 185.10971 * 8 7 6 11 11 O 1.21361 * 120.00036 * 359.86205 * 10 8 7 12 12 N 1.34781 * 119.99967 * 179.86350 * 10 8 7 13 13 C 1.46496 * 120.00034 * 354.34395 * 12 10 8 14 14 C 1.46503 * 119.99857 * 174.35108 * 12 10 8 15 15 C 1.50695 * 109.47442 * 89.99581 * 14 12 10 16 16 H 1.08006 * 119.99942 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99751 * 179.97438 * 15 14 12 18 18 N 1.31514 * 119.99677 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00351 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47240 * 89.99592 * 19 17 15 21 21 H 1.48500 * 109.47247 * 210.00107 * 19 17 15 22 22 H 1.48502 * 109.47071 * 329.99817 * 19 17 15 23 23 C 1.38933 * 119.99597 * 0.48303 * 6 5 4 24 24 C 1.38019 * 120.00050 * 359.75542 * 23 6 5 25 25 H 1.08997 * 109.47761 * 300.00079 * 1 2 3 26 26 H 1.09003 * 109.46650 * 60.00554 * 1 2 3 27 27 H 1.08995 * 109.46925 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00492 * 179.97438 * 2 1 3 29 29 H 1.07995 * 119.99833 * 0.02562 * 4 3 2 30 30 H 1.07994 * 119.99480 * 179.72562 * 5 4 3 31 31 H 0.97002 * 120.00383 * 324.84495 * 7 6 5 32 32 H 1.08994 * 109.47108 * 84.06224 * 13 12 10 33 33 H 1.09008 * 109.47298 * 204.06308 * 13 12 10 34 34 H 1.08997 * 109.47206 * 324.06050 * 13 12 10 35 35 H 1.09004 * 109.46737 * 209.99981 * 14 12 10 36 36 H 1.08999 * 109.46933 * 329.99345 * 14 12 10 37 37 H 0.96993 * 120.00099 * 179.97438 * 18 17 15 38 38 H 1.08003 * 119.99643 * 179.72183 * 23 6 5 39 39 H 1.07998 * 120.00370 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1641 1.2110 0.0000 4 6 3.5534 1.2110 0.0005 5 6 4.2435 2.4064 0.0064 6 6 3.5488 3.6096 0.0015 7 7 4.2483 4.8210 0.0023 8 6 3.7615 5.8806 -0.6734 9 8 2.6723 5.8131 -1.2053 10 6 4.5619 7.1377 -0.7679 11 8 5.6497 7.2061 -0.2341 12 7 4.0763 8.1964 -1.4461 13 6 2.8223 8.0749 -2.1937 14 6 4.8026 9.4687 -1.4357 15 6 5.7777 9.5000 -2.5842 16 1 5.8490 8.6566 -3.2551 17 6 6.5780 10.6057 -2.7790 18 7 7.4287 10.6332 -3.7817 19 14 6.4542 12.0645 -1.6191 20 1 7.4048 11.8835 -0.4927 21 1 6.7887 13.3110 -2.3538 22 1 5.0704 12.1590 -1.0885 23 6 2.1595 3.6095 0.0009 24 6 1.4695 2.4141 0.0001 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.9500 -0.8400 0.0004 29 1 4.0933 0.2757 0.0005 30 1 5.3234 2.4063 0.0113 31 1 5.0836 4.8985 0.4893 32 1 1.9807 8.2345 -1.5198 33 1 2.7988 8.8214 -2.9877 34 1 2.7546 7.0783 -2.6300 35 1 4.0951 10.2917 -1.5371 36 1 5.3450 9.5697 -0.4956 37 1 7.9914 11.4111 -3.9190 38 1 1.6195 4.5448 0.0017 39 1 0.3895 2.4140 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599874191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:26 Heat of formation + Delta-G solvation = -15.372193 kcal Electronic energy + Delta-G solvation = -22466.985647 eV Core-core repulsion = 18989.622755 eV Total energy + Delta-G solvation = -3477.362892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76242 -39.37263 -37.97321 -36.21562 -35.16287 -33.68182 -32.50011 -31.04833 -29.18223 -28.63704 -26.45647 -25.83544 -24.25184 -23.08085 -21.95495 -20.99715 -19.46029 -17.89312 -17.37564 -17.11965 -17.00358 -16.02292 -15.74627 -15.53577 -14.95749 -14.55353 -14.46391 -14.23916 -14.02815 -13.55418 -13.41177 -13.16620 -12.79845 -12.67988 -12.42703 -12.36062 -12.31466 -12.00429 -11.61775 -11.27748 -11.01502 -10.83840 -10.63014 -10.53707 -10.17715 -9.57244 -9.35471 -9.05000 -8.79492 -8.62091 -7.85342 -7.28403 -6.11315 -4.11272 1.28138 1.37586 1.99239 2.75586 3.24853 3.27788 3.33692 3.35038 3.63175 3.86923 4.03643 4.36709 4.72134 4.78216 4.87152 4.91076 5.15294 5.20944 5.30620 5.38032 5.40537 5.48900 5.84698 5.91395 5.99145 6.07549 6.18484 6.33406 6.38798 6.52305 6.56384 6.77892 6.79447 7.10287 7.17386 7.31549 7.47083 7.53513 7.88319 8.12084 8.38776 8.62423 8.92166 9.47103 11.01890 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.040153 B = 0.002998 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.165046 B = 9337.608055 C = 9600.856558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.757 5.757 3 C 0.196 3.804 4 C -0.177 4.177 5 C -0.092 4.092 6 C 0.089 3.911 7 N -0.647 5.647 8 C 0.509 3.491 9 O -0.507 6.507 10 C 0.497 3.503 11 O -0.521 6.521 12 N -0.560 5.560 13 C 0.079 3.921 14 C 0.213 3.787 15 C -0.531 4.531 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.265 1.265 23 C -0.070 4.070 24 C -0.179 4.179 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.399 0.601 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.420 0.580 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.266 0.734 38 H 0.140 0.860 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.376 -19.438 9.134 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.387 5.387 3 C 0.094 3.906 4 C -0.200 4.200 5 C -0.113 4.113 6 C -0.006 4.006 7 N -0.293 5.293 8 C 0.292 3.708 9 O -0.381 6.381 10 C 0.277 3.723 11 O -0.398 6.398 12 N -0.291 5.291 13 C -0.063 4.063 14 C 0.093 3.907 15 C -0.570 4.570 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.533 5.533 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.190 1.190 23 C -0.091 4.091 24 C -0.202 4.202 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.258 0.742 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.158 0.842 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.643 -19.191 8.901 25.173 hybrid contribution 0.647 0.491 0.577 0.996 sum -12.996 -18.701 9.479 24.667 Atomic orbital electron populations 1.21499 0.80390 1.02086 1.01130 1.44395 1.05519 1.05192 1.83644 1.17857 0.91098 0.86293 0.95362 1.20326 0.91833 0.97888 1.09972 1.20698 0.99739 0.90527 1.00301 1.17568 0.91397 0.84704 1.06954 1.43127 1.26724 1.09222 1.50277 1.20744 0.86559 0.85154 0.78345 1.90667 1.20502 1.82627 1.44351 1.19605 0.86358 0.84223 0.82100 1.90744 1.19877 1.81885 1.47331 1.47766 1.23682 1.11773 1.45903 1.22064 0.84285 1.03907 0.96091 1.19869 0.92522 0.79378 0.98905 1.21267 1.19887 1.04164 1.11652 0.90563 1.24851 0.94609 0.98260 0.95207 1.69890 1.23418 1.30247 1.29719 0.86845 0.79179 0.82293 0.81357 1.19824 1.20956 1.18986 1.21090 0.92469 0.98719 0.96797 1.20523 0.99574 0.90544 1.09531 0.93074 0.92992 0.91110 0.76787 0.85928 0.85457 0.74244 0.93082 0.90993 0.89658 0.94403 0.94305 0.92452 0.84242 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 9.94 59.85 0.59 1.13 16 2 N -0.76 -5.68 5.90 -65.34 -0.39 -6.06 16 3 C 0.20 2.01 6.66 -83.70 -0.56 1.45 16 4 C -0.18 -1.78 9.89 -39.40 -0.39 -2.17 16 5 C -0.09 -1.04 9.96 -39.40 -0.39 -1.43 16 6 C 0.09 1.19 6.30 -83.67 -0.53 0.66 16 7 N -0.65 -9.45 5.32 -10.26 -0.05 -9.50 16 8 C 0.51 8.87 7.61 -11.65 -0.09 8.78 16 9 O -0.51 -8.94 10.71 5.45 0.06 -8.88 16 10 C 0.50 10.38 7.72 -11.64 -0.09 10.29 16 11 O -0.52 -12.16 16.12 5.49 0.09 -12.07 16 12 N -0.56 -12.07 2.86 -183.52 -0.52 -12.59 16 13 C 0.08 1.42 9.27 59.84 0.55 1.97 16 14 C 0.21 5.21 4.16 -5.19 -0.02 5.18 16 15 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 16 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -27.48 13.96 55.43 0.77 -26.71 16 19 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 23 C -0.07 -0.93 8.69 -39.40 -0.34 -1.27 16 24 C -0.18 -2.02 9.30 -39.41 -0.37 -2.39 16 25 H 0.05 0.29 7.95 -51.93 -0.41 -0.12 16 26 H 0.05 0.32 7.95 -51.93 -0.41 -0.10 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.40 2.23 8.84 -40.82 -0.36 1.87 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.42 5.57 8.30 -40.82 -0.34 5.24 16 32 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.07 1.26 8.03 -51.92 -0.42 0.84 16 34 H 0.09 1.51 5.84 -51.93 -0.30 1.21 16 35 H 0.04 0.87 7.13 -51.93 -0.37 0.50 16 36 H 0.04 0.98 6.93 -51.93 -0.36 0.62 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.14 1.98 6.23 -52.48 -0.33 1.65 16 39 H 0.12 1.18 6.72 -52.49 -0.35 0.83 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -33.80 330.65 -6.73 -40.53 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.94 Total: 5.10 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -2.07 Total: 8.63 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.19 Total: -54.87 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.15 Total: -20.95 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.80 -6.73 -40.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599874191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.156 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds