Wall clock time and date at job start Tue Mar 31 2020 06:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39836 * 119.99860 * 2 1 4 4 C 1.38924 * 119.99827 * 179.97438 * 3 2 1 5 5 C 1.38029 * 119.99784 * 180.27894 * 4 3 2 6 6 C 1.38930 * 120.00001 * 359.51518 * 5 4 3 7 7 N 1.39887 * 119.99909 * 180.23986 * 6 5 4 8 8 C 1.34774 * 120.00082 * 144.84816 * 7 6 5 9 9 O 1.21401 * 119.99853 * 5.11058 * 8 7 6 10 10 C 1.49324 * 120.00180 * 185.10971 * 8 7 6 11 11 O 1.21361 * 120.00036 * 359.86205 * 10 8 7 12 12 N 1.34781 * 119.99967 * 179.86350 * 10 8 7 13 13 C 1.46496 * 120.00034 * 354.34395 * 12 10 8 14 14 C 1.46503 * 119.99857 * 174.35108 * 12 10 8 15 15 C 1.50695 * 109.47442 * 89.99581 * 14 12 10 16 16 H 1.08006 * 119.99942 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99751 * 179.97438 * 15 14 12 18 18 N 1.31514 * 119.99677 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00351 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47240 * 89.99592 * 19 17 15 21 21 H 1.48500 * 109.47247 * 210.00107 * 19 17 15 22 22 H 1.48502 * 109.47071 * 329.99817 * 19 17 15 23 23 C 1.38933 * 119.99597 * 0.48303 * 6 5 4 24 24 C 1.38019 * 120.00050 * 359.75542 * 23 6 5 25 25 H 1.08997 * 109.47761 * 300.00079 * 1 2 3 26 26 H 1.09003 * 109.46650 * 60.00554 * 1 2 3 27 27 H 1.08995 * 109.46925 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00492 * 179.97438 * 2 1 3 29 29 H 1.07995 * 119.99833 * 0.02562 * 4 3 2 30 30 H 1.07994 * 119.99480 * 179.72562 * 5 4 3 31 31 H 0.97002 * 120.00383 * 324.84495 * 7 6 5 32 32 H 1.08994 * 109.47108 * 84.06224 * 13 12 10 33 33 H 1.09008 * 109.47298 * 204.06308 * 13 12 10 34 34 H 1.08997 * 109.47206 * 324.06050 * 13 12 10 35 35 H 1.09004 * 109.46737 * 209.99981 * 14 12 10 36 36 H 1.08999 * 109.46933 * 329.99345 * 14 12 10 37 37 H 0.96993 * 120.00099 * 179.97438 * 18 17 15 38 38 H 1.08003 * 119.99643 * 179.72183 * 23 6 5 39 39 H 1.07998 * 120.00370 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1641 1.2110 0.0000 4 6 3.5534 1.2110 0.0005 5 6 4.2435 2.4064 0.0064 6 6 3.5488 3.6096 0.0015 7 7 4.2483 4.8210 0.0023 8 6 3.7615 5.8806 -0.6734 9 8 2.6723 5.8131 -1.2053 10 6 4.5619 7.1377 -0.7679 11 8 5.6497 7.2061 -0.2341 12 7 4.0763 8.1964 -1.4461 13 6 2.8223 8.0749 -2.1937 14 6 4.8026 9.4687 -1.4357 15 6 5.7777 9.5000 -2.5842 16 1 5.8490 8.6566 -3.2551 17 6 6.5780 10.6057 -2.7790 18 7 7.4287 10.6332 -3.7817 19 14 6.4542 12.0645 -1.6191 20 1 7.4048 11.8835 -0.4927 21 1 6.7887 13.3110 -2.3538 22 1 5.0704 12.1590 -1.0885 23 6 2.1595 3.6095 0.0009 24 6 1.4695 2.4141 0.0001 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.9500 -0.8400 0.0004 29 1 4.0933 0.2757 0.0005 30 1 5.3234 2.4063 0.0113 31 1 5.0836 4.8985 0.4893 32 1 1.9807 8.2345 -1.5198 33 1 2.7988 8.8214 -2.9877 34 1 2.7546 7.0783 -2.6300 35 1 4.0951 10.2917 -1.5371 36 1 5.3450 9.5697 -0.4956 37 1 7.9914 11.4111 -3.9190 38 1 1.6195 4.5448 0.0017 39 1 0.3895 2.4140 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599874191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:26 Heat of formation + Delta-G solvation = -40.291793 kcal Electronic energy + Delta-G solvation = -22468.066242 eV Core-core repulsion = 18989.622755 eV Total energy + Delta-G solvation = -3478.443487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.08174 -40.51121 -39.33129 -37.41479 -36.58358 -34.85004 -34.54222 -31.91505 -30.74772 -29.92384 -27.81129 -26.86236 -25.74705 -24.24033 -23.26778 -22.08344 -20.89476 -19.18408 -19.05802 -18.44106 -18.30058 -17.42140 -17.10681 -16.72117 -16.44472 -16.13447 -15.32112 -15.29049 -15.07595 -14.95185 -14.62611 -14.45891 -14.17970 -13.95152 -13.79061 -13.65345 -13.53451 -13.20726 -12.98814 -12.81297 -12.49230 -12.28479 -12.14574 -12.02617 -11.75492 -11.59815 -10.83124 -10.41168 -10.25427 -9.86477 -9.60278 -8.33905 -8.10194 -6.40988 0.12100 0.49806 0.75761 1.32920 1.39682 1.39745 1.49007 2.15913 2.32145 2.57136 2.66689 2.93616 3.00020 3.32010 3.97672 4.08782 4.38654 4.41537 4.45848 4.54362 4.59444 4.62610 4.71290 4.72512 4.84543 4.92292 4.97689 5.06430 5.16189 5.30318 5.36467 5.40487 5.45763 5.52650 5.84432 6.03189 6.20431 6.36112 6.41054 6.60140 6.74953 6.90863 6.97156 7.23121 8.83090 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.040153 B = 0.002998 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.165046 B = 9337.608055 C = 9600.856558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.749 5.749 3 C 0.201 3.799 4 C -0.178 4.178 5 C -0.089 4.089 6 C 0.055 3.945 7 N -0.631 5.631 8 C 0.514 3.486 9 O -0.511 6.511 10 C 0.490 3.510 11 O -0.554 6.554 12 N -0.571 5.571 13 C 0.082 3.918 14 C 0.220 3.780 15 C -0.541 4.541 16 H 0.027 0.973 17 C 0.012 3.988 18 N -0.944 5.944 19 Si 0.951 3.049 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.235 1.235 23 C -0.082 4.082 24 C -0.189 4.189 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.410 0.590 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.425 0.575 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.270 0.730 38 H 0.125 0.875 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.971 -20.688 10.599 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.379 5.379 3 C 0.097 3.903 4 C -0.201 4.201 5 C -0.110 4.110 6 C -0.039 4.039 7 N -0.278 5.278 8 C 0.296 3.704 9 O -0.388 6.388 10 C 0.272 3.728 11 O -0.433 6.433 12 N -0.302 5.302 13 C -0.060 4.060 14 C 0.099 3.901 15 C -0.580 4.580 16 H 0.045 0.955 17 C -0.186 4.186 18 N -0.584 5.584 19 Si 0.773 3.227 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.158 1.158 23 C -0.102 4.102 24 C -0.212 4.212 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.245 0.755 29 H 0.168 0.832 30 H 0.160 0.840 31 H 0.263 0.737 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.289 -20.522 10.372 27.613 hybrid contribution 1.107 0.629 0.078 1.276 sum -14.182 -19.893 10.449 26.572 Atomic orbital electron populations 1.21673 0.79189 1.03848 1.00984 1.44525 1.06413 1.04748 1.82206 1.18021 0.91495 0.86961 0.93870 1.20646 0.91966 0.98491 1.08969 1.20919 1.00632 0.90132 0.99289 1.17763 0.91667 0.84537 1.09906 1.42982 1.26697 1.09043 1.49046 1.20001 0.86268 0.84726 0.79355 1.90661 1.20399 1.82593 1.45102 1.20250 0.86235 0.85171 0.81141 1.90707 1.21366 1.82696 1.48548 1.47858 1.24557 1.11253 1.46491 1.22192 0.83495 1.03919 0.96381 1.19627 0.92304 0.81649 0.96516 1.21459 1.21420 1.02784 1.12307 0.95508 1.25881 0.93863 1.01836 0.97037 1.70049 1.24673 1.31639 1.32000 0.85672 0.80758 0.77691 0.78600 1.19654 1.20116 1.15812 1.21047 0.92547 0.98950 0.97681 1.20647 1.00306 0.90384 1.09845 0.92977 0.93349 0.88500 0.75454 0.83160 0.83963 0.73707 0.90459 0.90955 0.89721 0.92065 0.94904 0.92118 0.85763 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 9.94 127.77 1.27 2.02 16 2 N -0.75 -8.97 5.90 -360.65 -2.13 -11.09 16 3 C 0.20 3.64 6.66 38.19 0.25 3.90 16 4 C -0.18 -3.12 9.89 22.38 0.22 -2.90 16 5 C -0.09 -1.88 9.96 22.39 0.22 -1.66 16 6 C 0.06 1.46 6.30 38.19 0.24 1.70 16 7 N -0.63 -18.52 5.32 -304.72 -1.62 -20.14 16 8 C 0.51 18.12 7.61 87.23 0.66 18.78 16 9 O -0.51 -18.08 10.71 -3.41 -0.04 -18.11 16 10 C 0.49 20.85 7.72 87.23 0.67 21.52 16 11 O -0.55 -26.52 16.12 -3.28 -0.05 -26.57 16 12 N -0.57 -24.75 2.86 -852.88 -2.44 -27.18 16 13 C 0.08 2.88 9.27 127.77 1.18 4.06 16 14 C 0.22 10.71 4.16 85.63 0.36 11.07 16 15 C -0.54 -31.98 9.94 25.60 0.25 -31.72 16 16 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 17 C 0.01 0.71 5.47 84.66 0.46 1.18 16 18 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 19 Si 0.95 43.53 27.47 68.60 1.88 45.41 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 23 C -0.08 -2.14 8.69 22.38 0.19 -1.94 16 24 C -0.19 -4.01 9.30 22.38 0.21 -3.81 16 25 H 0.05 0.46 7.95 -2.39 -0.02 0.45 16 26 H 0.05 0.48 7.95 -2.39 -0.02 0.46 16 27 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.41 3.15 8.84 -92.71 -0.82 2.33 16 29 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.42 11.38 8.30 -92.71 -0.77 10.61 16 32 H 0.08 2.31 8.13 -2.39 -0.02 2.29 16 33 H 0.07 2.51 8.03 -2.38 -0.02 2.49 16 34 H 0.08 3.00 5.84 -2.39 -0.01 2.99 16 35 H 0.06 2.70 7.13 -2.38 -0.02 2.68 16 36 H 0.03 1.64 6.93 -2.39 -0.02 1.63 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.12 3.57 6.23 -2.91 -0.02 3.55 16 39 H 0.14 2.42 6.72 -2.91 -0.02 2.40 16 Total: -1.00 -75.22 330.65 1.57 -73.65 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.55 Total: 21.14 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 6.21 Total: 22.21 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -5.89 Total: -117.73 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.09 Total: -44.68 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -75.22 1.57 -73.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599874191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.358 kcal (2) G-P(sol) polarization free energy of solvation -75.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds