Wall clock time and date at job start Tue Mar 31 2020 07:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48508 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47335 * 300.00388 * 3 2 1 6 6 H 1.48493 * 109.47125 * 60.00666 * 3 2 1 7 7 C 1.37879 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00386 * 171.15642 * 7 2 1 9 9 C 1.50700 * 119.99872 * 351.15268 * 7 2 1 10 10 C 1.53007 * 115.54916 * 324.25790 * 9 7 2 11 11 N 1.46897 * 109.47019 * 306.36964 * 10 9 7 12 12 C 1.46845 * 110.99826 * 163.89260 * 11 10 9 13 13 C 1.53038 * 109.52074 * 185.83928 * 12 11 10 14 14 C 1.53117 * 109.27709 * 300.81577 * 13 12 11 15 15 C 1.50702 * 109.52220 * 177.56287 * 14 13 12 16 16 C 1.38420 * 122.54096 * 120.00108 * 15 14 13 17 17 C 1.33388 * 114.92461 * 179.97438 * 16 15 14 18 18 S 1.75891 * 109.59020 * 359.97438 * 17 16 15 19 19 C 1.33388 * 122.54063 * 299.97436 * 15 14 13 20 20 C 1.53118 * 109.16266 * 57.65630 * 14 13 12 21 21 C 1.46854 * 110.99870 * 288.09845 * 11 10 9 22 22 C 1.52999 * 117.49872 * 109.92917 * 9 7 2 23 23 C 1.53005 * 117.50065 * 178.59006 * 9 7 2 24 24 H 0.96995 * 119.99860 * 5.00156 * 1 2 3 25 25 H 1.09002 * 109.46671 * 186.36709 * 10 9 7 26 26 H 1.08997 * 109.46968 * 66.36820 * 10 9 7 27 27 H 1.08997 * 109.46797 * 65.81940 * 12 11 10 28 28 H 1.09002 * 109.45843 * 305.84871 * 12 11 10 29 29 H 1.09001 * 109.50294 * 180.87734 * 13 12 11 30 30 H 1.08997 * 109.50476 * 60.75584 * 13 12 11 31 31 H 1.08997 * 109.52158 * 297.68330 * 14 13 12 32 32 H 1.08004 * 122.53762 * 359.70475 * 16 15 14 33 33 H 1.07998 * 125.20746 * 179.97438 * 17 16 15 34 34 H 1.08006 * 125.19931 * 0.06380 * 19 15 14 35 35 H 1.08997 * 109.49994 * 62.28439 * 20 14 13 36 36 H 1.08997 * 109.50436 * 182.40181 * 20 14 13 37 37 H 1.09007 * 109.45841 * 294.17642 * 21 11 10 38 38 H 1.08997 * 109.46154 * 54.14589 * 21 11 10 39 39 H 1.09006 * 117.49654 * 215.00222 * 22 9 7 40 40 H 1.08996 * 117.50132 * 0.02562 * 22 9 7 41 41 H 1.09001 * 117.49498 * 359.97316 * 23 9 7 42 42 H 1.08996 * 117.50103 * 144.97426 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0750 -1.1996 -0.1443 9 6 1.2645 -2.4915 0.1996 10 6 0.0833 -2.4344 1.1705 11 7 0.5306 -1.8762 2.4535 12 6 -0.6136 -1.4511 3.2699 13 6 -0.1084 -0.7449 4.5301 14 6 0.7812 -1.7047 5.3252 15 6 1.3301 -0.9959 6.5365 16 6 1.0836 -1.4289 7.8279 17 6 1.6441 -0.6887 8.7856 18 16 2.5415 0.6371 8.0572 19 6 2.0908 0.0961 6.4455 20 6 1.9381 -2.1702 4.4367 21 6 1.3736 -2.8350 3.1792 22 6 1.1458 -3.4299 -1.0030 23 6 2.0810 -3.7847 0.1558 24 1 -0.4850 0.8368 -0.0732 25 1 -0.3066 -3.4401 1.3278 26 1 -0.7002 -1.8022 0.7526 27 1 -1.2016 -2.3239 3.5537 28 1 -1.2357 -0.7658 2.6943 29 1 -0.9574 -0.4433 5.1435 30 1 0.4682 0.1358 4.2474 31 1 0.1945 -2.5668 5.6424 32 1 0.4794 -2.2977 8.0439 33 1 1.5598 -0.8749 9.8461 34 1 2.3849 0.5749 5.5231 35 1 2.5468 -1.3119 4.1525 36 1 2.5511 -2.8868 4.9833 37 1 0.7762 -3.7014 3.4634 38 1 2.1947 -3.1548 2.5377 39 1 0.2262 -4.0066 -1.1025 40 1 1.6034 -3.1091 -1.9388 41 1 3.1535 -3.6970 -0.0182 42 1 1.7770 -4.5946 0.8188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602816386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:41 Heat of formation + Delta-G solvation = 47.798541 kcal Electronic energy + Delta-G solvation = -21730.244833 eV Core-core repulsion = 18801.914444 eV Total energy + Delta-G solvation = -2928.330389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54668 -38.97482 -37.39693 -34.02940 -33.75499 -31.60854 -30.03520 -27.78638 -27.10585 -25.11102 -23.97478 -22.96678 -22.79262 -20.73607 -20.49854 -19.43600 -18.47996 -18.01967 -16.73033 -16.53933 -15.83896 -15.77538 -15.28987 -15.15169 -14.75402 -14.66242 -14.23307 -13.92256 -13.61392 -13.41495 -13.28990 -13.19798 -13.01470 -12.83240 -12.77974 -12.29121 -12.25182 -12.03798 -12.02725 -11.85625 -11.48846 -11.38600 -11.24439 -10.96219 -10.84598 -10.38415 -9.85412 -9.64159 -9.22077 -8.66103 -7.86851 -5.93909 0.15268 0.81487 1.13405 1.42494 1.47811 1.54964 1.84515 2.52471 3.13119 3.41305 3.79171 3.82589 3.94251 4.10920 4.26345 4.37199 4.41363 4.45294 4.55303 4.57776 4.59971 4.71333 4.76622 4.81505 4.89567 4.94477 4.99080 5.00154 5.05937 5.11297 5.15384 5.20302 5.28358 5.30738 5.46461 5.49581 5.58317 5.60005 5.70942 5.74557 6.10650 6.50701 6.69371 6.80279 7.05006 7.66819 9.12853 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.004977 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.196578 B = 5624.944946 C = 6435.133249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.933 3.067 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.485 4.485 8 H 0.036 0.964 9 C 0.042 3.958 10 C 0.116 3.884 11 N -0.515 5.515 12 C 0.066 3.934 13 C -0.094 4.094 14 C -0.019 4.019 15 C -0.093 4.093 16 C -0.139 4.139 17 C -0.207 4.207 18 S 0.085 5.915 19 C -0.225 4.225 20 C -0.095 4.095 21 C 0.060 3.940 22 C -0.210 4.210 23 C -0.196 4.196 24 H 0.254 0.746 25 H -0.010 1.010 26 H 0.087 0.913 27 H 0.025 0.975 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.157 0.843 33 H 0.190 0.810 34 H 0.151 0.849 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.022 0.978 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -2.791 16.892 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.041 3.959 10 C -0.011 4.011 11 N -0.239 5.239 12 C -0.062 4.062 13 C -0.132 4.132 14 C -0.040 4.040 15 C -0.105 4.105 16 C -0.169 4.169 17 C -0.342 4.342 18 S 0.349 5.651 19 C -0.360 4.360 20 C -0.133 4.133 21 C -0.068 4.068 22 C -0.248 4.248 23 C -0.233 4.233 24 H 0.064 0.936 25 H 0.008 0.992 26 H 0.105 0.895 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.175 0.825 33 H 0.207 0.793 34 H 0.168 0.832 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.247 -1.015 17.458 17.532 hybrid contribution -0.770 -0.842 -1.077 1.569 sum 0.477 -1.856 16.381 16.493 Atomic orbital electron populations 1.69899 1.06500 1.26104 1.50275 1.25152 0.95128 1.00227 0.93800 0.85922 0.79140 0.81754 0.77064 1.20318 1.21296 1.21091 1.20431 0.92277 0.90587 1.48965 0.94569 1.19041 0.94826 0.88458 0.93525 1.21443 0.97428 0.93608 0.88651 1.61483 1.19321 1.40217 1.02863 1.21939 0.92281 0.97920 0.94075 1.21530 0.99072 0.97868 0.94712 1.19866 0.95868 0.97153 0.91105 1.19032 0.99567 0.96280 0.95666 1.20301 1.03194 1.02626 0.90790 1.25895 1.04507 0.99419 1.04364 1.84148 1.52455 1.30536 0.98006 1.25512 1.06952 1.02670 1.00855 1.21544 0.97102 1.00281 0.94374 1.22072 0.97100 0.92650 0.94953 1.22967 1.00179 1.07558 0.94114 1.22892 0.96423 1.01448 1.02515 0.93623 0.99206 0.89494 0.95706 0.92803 0.90805 0.93339 0.89659 0.82524 0.79306 0.83177 0.93027 0.90701 0.95964 0.91685 0.90799 0.91414 0.91076 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.54 10.72 21.45 0.23 -48.31 16 2 C 0.06 3.13 5.18 84.66 0.44 3.57 16 3 Si 0.93 44.11 29.55 68.60 2.03 46.14 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.49 -26.40 8.72 25.60 0.22 -26.18 16 8 H 0.04 2.03 7.83 -2.91 -0.02 2.01 16 9 C 0.04 2.06 1.57 -52.92 -0.08 1.98 16 10 C 0.12 5.38 4.05 86.31 0.35 5.73 16 11 N -0.52 -21.63 4.17 -896.34 -3.74 -25.37 16 12 C 0.07 2.44 5.44 86.33 0.47 2.91 16 13 C -0.09 -2.96 5.24 30.65 0.16 -2.79 16 14 C -0.02 -0.52 2.50 -11.46 -0.03 -0.55 16 15 C -0.09 -2.34 4.68 -20.92 -0.10 -2.44 16 16 C -0.14 -2.84 9.92 21.22 0.21 -2.63 16 17 C -0.21 -3.75 11.23 66.72 0.75 -3.00 16 18 S 0.09 1.80 23.34 -56.49 -1.32 0.48 16 19 C -0.22 -5.92 9.89 66.72 0.66 -5.26 16 20 C -0.09 -2.95 5.24 30.64 0.16 -2.79 16 21 C 0.06 2.19 5.26 86.32 0.45 2.64 16 22 C -0.21 -9.46 9.96 30.62 0.30 -9.16 16 23 C -0.20 -8.31 8.39 30.62 0.26 -8.06 16 24 H 0.25 13.44 8.32 -92.71 -0.77 12.67 16 25 H -0.01 -0.44 8.00 -2.39 -0.02 -0.46 16 26 H 0.09 4.51 5.75 -2.39 -0.01 4.50 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 2.21 7.96 -2.39 -0.02 2.20 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.74 7.67 -2.39 -0.02 1.73 16 31 H 0.09 2.10 8.04 -2.39 -0.02 2.08 16 32 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.15 4.33 7.77 -2.91 -0.02 4.31 16 35 H 0.05 1.82 7.65 -2.39 -0.02 1.80 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.06 2.57 6.02 -2.39 -0.01 2.55 16 39 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 40 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.08 3.14 8.06 -2.39 -0.02 3.12 16 Total: -1.00 -57.23 342.50 2.40 -54.83 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.98 Total: 18.26 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 4.23 Total: -46.02 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -3.51 Total: -73.68 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.32 Total: 0.48 kcal Total: -57.23 2.40 -54.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602816386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.624 kcal (2) G-P(sol) polarization free energy of solvation -57.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds