Wall clock time and date at job start Tue Mar 31 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 119.99882 * 2 1 4 4 N 1.46504 * 109.46965 * 124.99452 * 3 2 1 5 5 C 1.46492 * 120.00518 * 270.00004 * 4 3 2 6 6 C 1.50704 * 109.47334 * 270.00453 * 5 4 3 7 7 H 1.07999 * 119.99931 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00204 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99729 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00195 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46915 * 59.99599 * 10 8 6 12 12 H 1.48498 * 109.47327 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46965 * 299.99739 * 10 8 6 14 14 C 1.34786 * 119.99707 * 90.00309 * 4 3 2 15 15 O 1.21566 * 120.00005 * 179.97438 * 14 4 3 16 16 N 1.34776 * 119.99728 * 0.02562 * 14 4 3 17 17 C 1.38812 * 119.99636 * 185.04978 * 16 14 4 18 18 C 1.41050 * 120.52462 * 57.11389 * 17 16 14 19 19 C 1.34983 * 119.78597 * 179.97438 * 18 17 16 20 20 N 1.35919 * 120.90062 * 359.72483 * 19 18 17 21 21 C 1.46502 * 119.45453 * 180.30125 * 20 19 18 22 22 C 1.34594 * 121.09718 * 0.56079 * 20 19 18 23 23 O 1.22121 * 119.92236 * 179.71513 * 22 20 19 24 24 C 1.38410 * 120.52487 * 237.08930 * 17 16 14 25 25 H 1.08000 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99927 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00236 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47517 * 5.00260 * 3 2 1 29 29 H 1.09003 * 109.47506 * 244.99757 * 3 2 1 30 30 H 1.09006 * 109.47013 * 29.99834 * 5 4 3 31 31 H 1.09003 * 109.47579 * 150.00098 * 5 4 3 32 32 H 0.97009 * 119.99964 * 180.02562 * 9 8 6 33 33 H 0.96995 * 120.00305 * 5.04725 * 16 14 4 34 34 H 1.08000 * 120.10606 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.54985 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47005 * 270.25730 * 21 20 19 37 37 H 1.08998 * 109.46886 * 30.25523 * 21 20 19 38 38 H 1.09004 * 109.47009 * 150.25364 * 21 20 19 39 39 H 1.08001 * 120.44988 * 0.05051 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.5587 1.8649 2.4249 6 6 2.8440 3.3437 2.4805 7 1 3.3037 3.8370 1.6368 8 6 2.5191 4.0666 3.6087 9 7 1.9597 3.4657 4.6361 10 14 2.8734 5.8994 3.6778 11 1 2.1376 6.5872 2.5866 12 1 2.4324 6.4397 4.9888 13 1 4.3313 6.1282 3.5127 14 6 4.2496 0.8662 0.9825 15 8 5.0217 0.8889 1.9213 16 7 4.6499 0.3763 -0.2075 17 6 5.9069 -0.1989 -0.3339 18 6 6.2821 -1.2869 0.4816 19 6 7.5080 -1.8353 0.3457 20 7 8.3887 -1.3571 -0.5724 21 6 9.7086 -1.9805 -0.6975 22 6 8.0704 -0.3170 -1.3651 23 8 8.8802 0.0987 -2.1793 24 6 6.8117 0.2857 -1.2624 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.4885 1.6967 2.5459 31 1 3.0988 1.3603 3.2261 32 1 1.7308 3.9744 5.4298 33 1 4.0597 0.4257 -0.9757 34 1 5.5904 -1.6805 1.2117 35 1 7.7911 -2.6685 0.9718 36 1 10.4095 -1.4851 -0.0256 37 1 9.6381 -3.0360 -0.4351 38 1 10.0601 -1.8841 -1.7248 39 1 6.5499 1.1180 -1.8990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603027070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:40 Heat of formation + Delta-G solvation = 9.408889 kcal Electronic energy + Delta-G solvation = -22919.757385 eV Core-core repulsion = 19443.469081 eV Total energy + Delta-G solvation = -3476.288304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32438 -39.80822 -36.97869 -36.08211 -35.36666 -33.23865 -32.61780 -31.89443 -29.85035 -27.87415 -26.98022 -25.55468 -23.88002 -23.40462 -21.87590 -20.15245 -19.57261 -18.08404 -17.50548 -17.18605 -16.86733 -16.47337 -15.99111 -15.47501 -14.90238 -14.84412 -14.45948 -14.10432 -14.04373 -13.32474 -13.25922 -13.14921 -12.89581 -12.72540 -12.28800 -12.01594 -11.85448 -11.69402 -11.33190 -11.14048 -10.94026 -10.60853 -10.36592 -10.20048 -10.05676 -9.70352 -9.45425 -9.27096 -8.85979 -8.44230 -7.97060 -7.75687 -6.05833 -4.10555 0.77722 1.90108 2.35122 2.63393 3.12453 3.32120 3.36545 3.40662 3.57732 3.81776 4.31118 4.45380 4.53545 4.61143 5.05795 5.11380 5.14493 5.20918 5.28407 5.28633 5.33736 5.44610 5.45527 5.61278 5.92191 6.03689 6.08999 6.25657 6.27836 6.64376 6.72464 6.86749 6.92930 7.06472 7.29262 7.44192 7.58219 7.91364 8.07287 8.20371 8.46729 8.89433 9.14668 9.54863 11.02064 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.004253 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.707083 B = 6582.506831 C = 7568.593562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C 0.136 3.864 4 N -0.601 5.601 5 C 0.262 3.738 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.702 3.298 15 O -0.563 6.563 16 N -0.707 5.707 17 C 0.286 3.714 18 C -0.209 4.209 19 C 0.134 3.866 20 N -0.505 5.505 21 C 0.061 3.939 22 C 0.525 3.475 23 O -0.565 6.565 24 C -0.279 4.279 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.406 0.594 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -13.920 -10.939 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.191 4.191 3 C 0.012 3.988 4 N -0.335 5.335 5 C 0.143 3.857 6 C -0.569 4.569 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.404 3.596 15 O -0.438 6.438 16 N -0.361 5.361 17 C 0.185 3.815 18 C -0.234 4.234 19 C 0.007 3.993 20 N -0.217 5.217 21 C -0.080 4.080 22 C 0.328 3.672 23 O -0.449 6.449 24 C -0.304 4.304 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.245 0.755 34 H 0.166 0.834 35 H 0.182 0.818 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.438 -13.562 -10.490 17.987 hybrid contribution -0.324 1.059 -0.104 1.112 sum 5.114 -12.504 -10.594 17.168 Atomic orbital electron populations 1.23834 0.95823 1.01860 1.00052 1.23422 0.96487 0.98878 1.00346 1.20552 0.93239 0.95805 0.89206 1.47598 1.08523 1.63129 1.14241 1.19249 0.95294 0.93607 0.77517 1.21424 1.40687 0.93402 1.01338 0.92482 1.24905 0.94988 0.98745 0.95276 1.69919 1.41951 1.36286 1.05177 0.86568 0.78893 0.84880 0.77146 1.20246 1.21168 1.20170 1.15887 0.83207 0.78682 0.81863 1.90946 1.52720 1.61259 1.38902 1.42845 1.15916 1.64255 1.13071 1.17860 0.84261 0.88035 0.91328 1.20791 0.97693 0.99508 1.05432 1.21664 0.89148 0.97743 0.90740 1.45397 1.15415 1.29266 1.31641 1.22100 0.82787 0.98038 1.05117 1.16583 0.89008 0.79991 0.81573 1.90945 1.52159 1.63686 1.38113 1.22257 0.92809 1.06185 1.09128 0.88196 0.88714 0.87734 0.88932 0.91474 0.94634 0.93702 0.92642 0.75519 0.83430 0.81784 0.90808 0.89877 0.88946 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 14.32 29.02 0.42 -1.70 16 2 C -0.17 -2.23 9.85 -36.03 -0.35 -2.59 16 3 C 0.14 2.06 5.66 -5.19 -0.03 2.03 16 4 N -0.60 -12.14 2.44 -182.18 -0.44 -12.58 16 5 C 0.26 6.65 5.16 -5.20 -0.03 6.62 16 6 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 10 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.70 14.21 8.07 -86.91 -0.70 13.51 16 15 O -0.56 -13.94 15.30 5.31 0.08 -13.86 16 16 N -0.71 -10.78 5.14 -14.07 -0.07 -10.85 16 17 C 0.29 4.22 5.75 -83.57 -0.48 3.74 16 18 C -0.21 -2.68 8.98 -39.67 -0.36 -3.04 16 19 C 0.13 1.34 10.26 -16.90 -0.17 1.17 16 20 N -0.51 -5.87 2.99 -127.46 -0.38 -6.25 16 21 C 0.06 0.49 10.34 59.85 0.62 1.11 16 22 C 0.53 8.10 7.38 -15.71 -0.12 7.98 16 23 O -0.56 -10.35 16.61 4.81 0.08 -10.27 16 24 C -0.28 -4.20 9.96 -38.88 -0.39 -4.59 16 25 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 26 H 0.09 0.97 8.06 -52.49 -0.42 0.54 16 27 H 0.10 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 29 H 0.07 0.82 6.29 -51.93 -0.33 0.50 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.41 4.93 6.52 -40.82 -0.27 4.67 16 34 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.16 0.93 8.03 -52.49 -0.42 0.50 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.37 8.01 -51.93 -0.42 -0.05 16 38 H 0.09 0.83 7.37 -51.93 -0.38 0.45 16 39 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -36.29 340.97 -6.98 -43.28 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.09 Total: 3.26 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -2.01 Total: 10.81 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.16 Total: -55.13 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.16 Total: -24.13 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.29 -6.98 -43.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603027070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.687 kcal (2) G-P(sol) polarization free energy of solvation -36.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds