Wall clock time and date at job start Tue Mar 31 2020 06:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 119.99882 * 2 1 4 4 N 1.46504 * 109.46965 * 124.99452 * 3 2 1 5 5 C 1.46492 * 120.00518 * 270.00004 * 4 3 2 6 6 C 1.50704 * 109.47334 * 270.00453 * 5 4 3 7 7 H 1.07999 * 119.99931 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00204 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99729 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00195 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46915 * 59.99599 * 10 8 6 12 12 H 1.48498 * 109.47327 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46965 * 299.99739 * 10 8 6 14 14 C 1.34786 * 119.99707 * 90.00309 * 4 3 2 15 15 O 1.21566 * 120.00005 * 179.97438 * 14 4 3 16 16 N 1.34776 * 119.99728 * 0.02562 * 14 4 3 17 17 C 1.38812 * 119.99636 * 185.04978 * 16 14 4 18 18 C 1.41050 * 120.52462 * 57.11389 * 17 16 14 19 19 C 1.34983 * 119.78597 * 179.97438 * 18 17 16 20 20 N 1.35919 * 120.90062 * 359.72483 * 19 18 17 21 21 C 1.46502 * 119.45453 * 180.30125 * 20 19 18 22 22 C 1.34594 * 121.09718 * 0.56079 * 20 19 18 23 23 O 1.22121 * 119.92236 * 179.71513 * 22 20 19 24 24 C 1.38410 * 120.52487 * 237.08930 * 17 16 14 25 25 H 1.08000 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99927 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00236 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47517 * 5.00260 * 3 2 1 29 29 H 1.09003 * 109.47506 * 244.99757 * 3 2 1 30 30 H 1.09006 * 109.47013 * 29.99834 * 5 4 3 31 31 H 1.09003 * 109.47579 * 150.00098 * 5 4 3 32 32 H 0.97009 * 119.99964 * 180.02562 * 9 8 6 33 33 H 0.96995 * 120.00305 * 5.04725 * 16 14 4 34 34 H 1.08000 * 120.10606 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.54985 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47005 * 270.25730 * 21 20 19 37 37 H 1.08998 * 109.46886 * 30.25523 * 21 20 19 38 38 H 1.09004 * 109.47009 * 150.25364 * 21 20 19 39 39 H 1.08001 * 120.44988 * 0.05051 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.5587 1.8649 2.4249 6 6 2.8440 3.3437 2.4805 7 1 3.3037 3.8370 1.6368 8 6 2.5191 4.0666 3.6087 9 7 1.9597 3.4657 4.6361 10 14 2.8734 5.8994 3.6778 11 1 2.1376 6.5872 2.5866 12 1 2.4324 6.4397 4.9888 13 1 4.3313 6.1282 3.5127 14 6 4.2496 0.8662 0.9825 15 8 5.0217 0.8889 1.9213 16 7 4.6499 0.3763 -0.2075 17 6 5.9069 -0.1989 -0.3339 18 6 6.2821 -1.2869 0.4816 19 6 7.5080 -1.8353 0.3457 20 7 8.3887 -1.3571 -0.5724 21 6 9.7086 -1.9805 -0.6975 22 6 8.0704 -0.3170 -1.3651 23 8 8.8802 0.0987 -2.1793 24 6 6.8117 0.2857 -1.2624 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.4885 1.6967 2.5459 31 1 3.0988 1.3603 3.2261 32 1 1.7308 3.9744 5.4298 33 1 4.0597 0.4257 -0.9757 34 1 5.5904 -1.6805 1.2117 35 1 7.7911 -2.6685 0.9718 36 1 10.4095 -1.4851 -0.0256 37 1 9.6381 -3.0360 -0.4351 38 1 10.0601 -1.8841 -1.7248 39 1 6.5499 1.1180 -1.8990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603027070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:39 Heat of formation + Delta-G solvation = -15.120376 kcal Electronic energy + Delta-G solvation = -22920.821053 eV Core-core repulsion = 19443.469081 eV Total energy + Delta-G solvation = -3477.351973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.42793 -41.27817 -38.22438 -37.39535 -36.75696 -35.09005 -33.86556 -33.36315 -30.93853 -29.59364 -28.00918 -26.94445 -25.30539 -24.73151 -23.27523 -21.43455 -20.83489 -19.44753 -18.67204 -18.54403 -18.28552 -18.02871 -16.99448 -16.96021 -16.36908 -16.27688 -15.90976 -15.61744 -15.14463 -14.70798 -14.48136 -14.17429 -14.15113 -14.06689 -13.55509 -13.29237 -13.08293 -13.07372 -12.90625 -12.67476 -12.57528 -12.25268 -12.19871 -11.70651 -11.48877 -11.36765 -11.04859 -10.62067 -10.32832 -10.15032 -9.45807 -9.02245 -8.20541 -6.34331 -0.28304 0.81598 1.26892 1.37977 1.41472 1.48623 1.68858 1.81623 2.12224 2.39892 2.61919 2.98146 3.09977 3.74106 3.79671 4.02332 4.15230 4.19405 4.23404 4.34398 4.45270 4.49126 4.53581 4.78507 4.83143 4.93436 5.01293 5.06435 5.19992 5.24403 5.33185 5.50131 5.70115 5.71210 5.74825 5.90087 6.00226 6.04282 6.08085 6.73929 6.94448 6.97474 7.32070 7.58224 8.85951 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.004253 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.707083 B = 6582.506831 C = 7568.593562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.185 4.185 3 C 0.132 3.868 4 N -0.605 5.605 5 C 0.282 3.718 6 C -0.546 4.546 7 H 0.050 0.950 8 C 0.014 3.986 9 N -0.924 5.924 10 Si 0.961 3.039 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.282 1.282 14 C 0.703 3.297 15 O -0.615 6.615 16 N -0.687 5.687 17 C 0.279 3.721 18 C -0.239 4.239 19 C 0.169 3.831 20 N -0.499 5.499 21 C 0.054 3.946 22 C 0.513 3.487 23 O -0.606 6.606 24 C -0.301 4.301 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.029 0.971 31 H 0.003 0.997 32 H 0.267 0.733 33 H 0.421 0.579 34 H 0.149 0.851 35 H 0.222 0.778 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.079 0.921 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -15.243 -11.418 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C 0.010 3.990 4 N -0.338 5.338 5 C 0.160 3.840 6 C -0.585 4.585 7 H 0.069 0.931 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.786 3.214 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.208 1.208 14 C 0.405 3.595 15 O -0.494 6.494 16 N -0.342 5.342 17 C 0.179 3.821 18 C -0.263 4.263 19 C 0.041 3.959 20 N -0.208 5.208 21 C -0.086 4.086 22 C 0.318 3.682 23 O -0.494 6.494 24 C -0.325 4.325 25 H 0.117 0.883 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.047 0.953 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.263 0.737 34 H 0.166 0.834 35 H 0.239 0.761 36 H 0.100 0.900 37 H 0.149 0.851 38 H 0.097 0.903 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.632 -14.925 -11.039 19.399 hybrid contribution -0.382 1.354 0.053 1.408 sum 5.250 -13.571 -10.985 18.232 Atomic orbital electron populations 1.24062 0.95514 1.02953 0.97774 1.23290 0.96824 0.98000 1.02316 1.20802 0.92810 0.96979 0.88429 1.47411 1.09527 1.62882 1.14017 1.18654 0.94052 0.92229 0.79023 1.21710 1.40644 0.94747 1.01351 0.93142 1.25736 0.94688 1.03263 0.94888 1.70025 1.42681 1.38003 1.05698 0.85568 0.78299 0.79634 0.77905 1.18611 1.20222 1.20760 1.15955 0.82674 0.78411 0.82458 1.90898 1.54115 1.63342 1.41012 1.42467 1.16438 1.63417 1.11846 1.18108 0.83703 0.88582 0.91680 1.20917 0.99392 0.99935 1.06069 1.22432 0.87316 0.97234 0.88881 1.45550 1.16915 1.27880 1.30484 1.22445 0.80808 1.00599 1.04777 1.16651 0.88688 0.80937 0.81946 1.90913 1.53135 1.65313 1.40052 1.22194 0.93413 1.06982 1.09958 0.88262 0.86477 0.86718 0.89826 0.88555 0.95302 0.97874 0.92378 0.73742 0.83367 0.76119 0.90016 0.85086 0.90251 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 14.32 67.79 0.97 -2.66 16 2 C -0.19 -4.57 9.85 25.65 0.25 -4.31 16 3 C 0.13 3.92 5.66 85.63 0.48 4.41 16 4 N -0.61 -24.87 2.44 -848.57 -2.07 -26.94 16 5 C 0.28 14.77 5.16 85.64 0.44 15.21 16 6 C -0.55 -31.11 9.39 25.60 0.24 -30.87 16 7 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 8 C 0.01 0.78 5.46 84.66 0.46 1.24 16 9 N -0.92 -54.97 13.29 21.45 0.28 -54.69 16 10 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 14 C 0.70 28.98 8.07 179.05 1.45 30.43 16 15 O -0.61 -31.39 15.30 -3.92 -0.06 -31.45 16 16 N -0.69 -20.89 5.14 -316.70 -1.63 -22.51 16 17 C 0.28 8.18 5.75 38.77 0.22 8.41 16 18 C -0.24 -5.77 8.98 22.21 0.20 -5.57 16 19 C 0.17 2.82 10.26 83.31 0.85 3.67 16 20 N -0.50 -10.45 2.99 -675.31 -2.02 -12.47 16 21 C 0.05 0.69 10.34 127.77 1.32 2.01 16 22 C 0.51 15.72 7.38 84.68 0.63 16.35 16 23 O -0.61 -22.63 16.61 -5.71 -0.09 -22.72 16 24 C -0.30 -9.20 9.96 22.72 0.23 -8.97 16 25 H 0.10 2.20 7.84 -2.91 -0.02 2.17 16 26 H 0.12 2.07 8.06 -2.91 -0.02 2.04 16 27 H 0.11 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.08 2.63 7.72 -2.39 -0.02 2.62 16 29 H 0.10 2.24 6.29 -2.39 -0.02 2.22 16 30 H 0.03 1.53 8.07 -2.38 -0.02 1.51 16 31 H 0.00 0.19 7.42 -2.39 -0.02 0.17 16 32 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 33 H 0.42 9.92 6.52 -92.71 -0.60 9.32 16 34 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.22 1.15 8.03 -2.91 -0.02 1.13 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.13 0.45 8.01 -2.39 -0.02 0.43 16 38 H 0.08 1.29 7.37 -2.39 -0.02 1.28 16 39 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -82.96 340.97 4.65 -78.31 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.46 Total: 16.21 kcal Atomic # 6 Polarization: 21.60 SS G_CDS: 7.75 Total: 29.35 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -5.43 Total: -116.61 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.15 Total: -54.17 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -82.96 4.65 -78.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603027070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.190 kcal (2) G-P(sol) polarization free energy of solvation -82.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds