Wall clock time and date at job start Tue Mar 31 2020 06:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34722 * 117.00336 * 2 1 4 4 O 1.21483 * 120.00282 * 0.02562 * 3 2 1 5 5 C 1.47701 * 120.00486 * 179.97438 * 3 2 1 6 6 C 1.39490 * 120.01269 * 180.02562 * 5 3 2 7 7 N 1.32015 * 119.98375 * 179.97438 * 6 5 3 8 8 C 1.32796 * 119.98909 * 0.02562 * 7 6 5 9 9 N 1.38371 * 119.99588 * 180.02562 * 8 7 6 10 10 C 1.46851 * 111.00122 * 124.20251 * 9 8 7 11 11 C 1.53030 * 109.52255 * 174.16061 * 10 9 8 12 12 C 1.53124 * 109.27759 * 59.18437 * 11 10 9 13 13 C 1.53121 * 109.15839 * 302.34400 * 12 11 10 14 14 H 1.08999 * 109.50278 * 297.71228 * 13 12 11 15 15 C 1.50701 * 109.50279 * 177.59596 * 13 12 11 16 16 H 1.07996 * 120.00012 * 0.19260 * 15 13 12 17 17 C 1.37876 * 120.00041 * 180.19394 * 15 13 12 18 18 N 1.31514 * 120.00051 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 120.00044 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47408 * 89.99639 * 19 17 15 21 21 H 1.48497 * 109.47218 * 209.99711 * 19 17 15 22 22 H 1.48502 * 109.47039 * 329.99538 * 19 17 15 23 23 C 1.46844 * 110.99521 * 359.97438 * 9 8 7 24 24 C 1.39883 * 120.01242 * 359.97438 * 8 7 6 25 25 N 1.31455 * 120.02527 * 0.02562 * 24 8 7 26 26 H 1.09001 * 109.46967 * 59.99838 * 1 2 3 27 27 H 1.08998 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47132 * 300.00382 * 1 2 3 29 29 H 1.08002 * 120.00820 * 359.95144 * 6 5 3 30 30 H 1.08999 * 109.46192 * 294.18108 * 10 9 8 31 31 H 1.08997 * 109.45923 * 54.14408 * 10 9 8 32 32 H 1.09002 * 109.50850 * 299.24432 * 11 10 9 33 33 H 1.08998 * 109.53847 * 179.13947 * 11 10 9 34 34 H 1.09004 * 109.52430 * 182.44236 * 12 11 10 35 35 H 1.09001 * 109.52080 * 62.24736 * 12 11 10 36 36 H 0.97001 * 119.99996 * 180.02562 * 18 17 15 37 37 H 1.09009 * 109.46304 * 305.85223 * 23 9 8 38 38 H 1.08999 * 109.46940 * 65.83398 * 23 9 8 39 39 H 1.08002 * 119.98835 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4022 2.2193 0.0005 5 6 3.5387 1.2777 0.0006 6 6 4.1722 2.5204 0.0011 7 7 5.4906 2.5889 0.0021 8 6 6.2131 1.4747 0.0021 9 7 7.5949 1.5463 0.0037 10 6 8.1591 0.8031 1.1377 11 6 9.6852 0.7814 1.0265 12 6 10.2122 2.2191 1.0216 13 6 9.5723 2.9849 -0.1398 14 1 9.8610 2.5224 -1.0836 15 6 10.0404 4.4172 -0.1166 16 1 10.7281 4.7482 0.6475 17 6 9.5907 5.3050 -1.0708 18 7 9.9988 6.5550 -1.0503 19 14 8.4007 4.7326 -2.3921 20 1 7.0062 4.9207 -1.9175 21 1 8.6142 5.5270 -3.6284 22 1 8.6357 3.2949 -2.6807 23 6 8.0494 2.9426 0.0047 24 6 5.5775 0.2286 0.0016 25 7 4.2647 0.1598 0.0006 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.5843 3.4264 0.0003 30 1 7.8697 1.2881 2.0699 31 1 7.7796 -0.2186 1.1271 32 1 9.9757 0.2842 0.1010 33 1 10.1050 0.2429 1.8761 34 1 11.2953 2.2097 0.8989 35 1 9.9555 2.7043 1.9633 36 1 9.6822 7.1797 -1.7214 37 1 7.5904 3.4746 -0.8288 38 1 7.7607 3.4180 0.9421 39 1 6.1655 -0.6773 0.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603403104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:56 Heat of formation + Delta-G solvation = -17.647052 kcal Electronic energy + Delta-G solvation = -23236.562570 eV Core-core repulsion = 19759.101033 eV Total energy + Delta-G solvation = -3477.461538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.55637 -40.29271 -38.63582 -36.64441 -34.78621 -33.86988 -32.51089 -30.64680 -30.48755 -27.97235 -25.74379 -25.48508 -24.28055 -22.99054 -21.89132 -21.25845 -19.19752 -18.44165 -17.81917 -17.38418 -16.87802 -16.62731 -16.54800 -15.36029 -15.10832 -14.80480 -14.37941 -14.15696 -13.97835 -13.63513 -13.46946 -13.17548 -12.98191 -12.70372 -12.33529 -12.28675 -11.76710 -11.41051 -11.32469 -11.13537 -11.01841 -11.00626 -10.66716 -10.46614 -10.16781 -9.94348 -9.71355 -9.46681 -9.18853 -9.06536 -8.60330 -8.20520 -6.14861 -4.16078 0.22323 0.99713 2.22249 2.38450 3.28507 3.34780 3.39312 3.41255 3.65106 3.91147 4.20147 4.35296 4.40030 4.71952 4.86971 4.94892 4.95313 5.03930 5.15035 5.19041 5.26687 5.35120 5.45887 5.61620 5.82080 5.98586 6.03792 6.06541 6.07848 6.24543 6.41017 6.50986 6.56811 6.78696 6.99212 7.08159 7.22988 7.40570 7.51551 7.64550 7.73422 8.43927 8.89056 9.46863 10.97790 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020490 B = 0.004558 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.215752 B = 6141.877536 C = 7172.747042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.337 6.337 3 C 0.537 3.463 4 O -0.503 6.503 5 C -0.030 4.030 6 C 0.164 3.836 7 N -0.481 5.481 8 C 0.314 3.686 9 N -0.468 5.468 10 C 0.064 3.936 11 C -0.120 4.120 12 C -0.106 4.106 13 C 0.016 3.984 14 H 0.037 0.963 15 C -0.516 4.516 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.895 5.895 19 Si 0.872 3.128 20 H -0.271 1.271 21 H -0.295 1.295 22 H -0.262 1.262 23 C 0.057 3.943 24 C 0.030 3.970 25 N -0.368 5.368 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.182 0.818 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.265 0.735 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.528 -15.274 3.793 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.252 6.252 3 C 0.380 3.620 4 O -0.391 6.391 5 C -0.168 4.168 6 C 0.002 3.998 7 N -0.200 5.200 8 C 0.076 3.924 9 N -0.182 5.182 10 C -0.061 4.061 11 C -0.158 4.158 12 C -0.143 4.143 13 C -0.003 4.003 14 H 0.055 0.945 15 C -0.555 4.555 16 H 0.096 0.904 17 C -0.127 4.127 18 N -0.533 5.533 19 Si 0.702 3.298 20 H -0.197 1.197 21 H -0.223 1.223 22 H -0.187 1.187 23 C -0.068 4.068 24 C -0.141 4.141 25 N -0.084 5.084 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.199 0.801 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.548 -14.986 3.300 19.822 hybrid contribution -1.176 0.319 -0.377 1.276 sum -13.724 -14.666 2.923 20.298 Atomic orbital electron populations 1.23331 0.76183 1.03846 1.02624 1.86679 1.23120 1.31829 1.83599 1.20429 0.87347 0.81738 0.72472 1.90868 1.65836 1.36036 1.46320 1.20645 0.91679 0.91662 1.12778 1.23693 0.90254 0.97723 0.88163 1.68853 1.06150 1.29922 1.15125 1.21576 0.91924 0.90573 0.88366 1.58859 1.00925 1.19101 1.39353 1.22308 0.97055 0.97313 0.89429 1.21714 0.92439 0.99453 1.02176 1.21564 1.00299 0.92698 0.99786 1.19291 0.88590 0.97178 0.95286 0.94542 1.20959 1.28353 0.91752 1.14395 0.90447 1.25013 0.95810 0.94737 0.97182 1.69879 1.44313 1.03607 1.35453 0.87062 0.81966 0.79310 0.81479 1.19708 1.22254 1.18678 1.23035 0.99609 0.81866 1.02293 1.23400 0.90229 0.97654 1.02866 1.68256 1.06556 1.29759 1.03831 0.91770 0.87895 0.91773 0.80134 0.93033 0.90215 0.91060 0.91356 0.91857 0.92615 0.92479 0.90541 0.92540 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.57 101.05 1.07 1.35 16 2 O -0.34 -4.19 10.39 -40.55 -0.42 -4.61 16 3 C 0.54 7.55 7.94 34.60 0.27 7.83 16 4 O -0.50 -7.64 16.12 -19.25 -0.31 -7.95 16 5 C -0.03 -0.45 6.74 -82.90 -0.56 -1.01 16 6 C 0.16 2.53 10.76 -17.01 -0.18 2.35 16 7 N -0.48 -8.64 8.82 -11.94 -0.11 -8.74 16 8 C 0.31 5.17 6.39 -155.01 -0.99 4.18 16 9 N -0.47 -8.07 4.67 -173.09 -0.81 -8.87 16 10 C 0.06 0.86 5.24 -3.84 -0.02 0.84 16 11 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 12 C -0.11 -1.89 5.23 -26.60 -0.14 -2.03 16 13 C 0.02 0.35 1.85 -91.69 -0.17 0.18 16 14 H 0.04 0.85 7.21 -51.93 -0.37 0.48 16 15 C -0.52 -13.96 9.15 -34.44 -0.31 -14.28 16 16 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 17 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 18 N -0.90 -27.00 13.96 55.43 0.77 -26.22 16 19 Si 0.87 21.92 24.36 -169.99 -4.14 17.78 16 20 H -0.27 -6.78 6.88 56.52 0.39 -6.40 16 21 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.26 -6.39 6.53 56.52 0.37 -6.03 16 23 C 0.06 1.20 3.40 -3.84 -0.01 1.18 16 24 C 0.03 0.41 10.33 -17.10 -0.18 0.23 16 25 N -0.37 -5.34 10.26 -9.46 -0.10 -5.44 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.18 2.47 7.63 -52.49 -0.40 2.07 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.81 6.67 -51.93 -0.35 0.47 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.08 1.80 2.86 -51.92 -0.15 1.65 16 38 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 39 H 0.18 1.86 7.14 -52.49 -0.37 1.48 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -32.10 319.30 -6.83 -38.93 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.05 Total: -0.77 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.48 Total: 1.08 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.24 Total: -49.28 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.73 Total: -12.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.10 -6.83 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603403104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.283 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds