Wall clock time and date at job start Tue Mar 31 2020 06:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34722 * 117.00336 * 2 1 4 4 O 1.21483 * 120.00282 * 0.02562 * 3 2 1 5 5 C 1.47701 * 120.00486 * 179.97438 * 3 2 1 6 6 C 1.39490 * 120.01269 * 180.02562 * 5 3 2 7 7 N 1.32015 * 119.98375 * 179.97438 * 6 5 3 8 8 C 1.32796 * 119.98909 * 0.02562 * 7 6 5 9 9 N 1.38371 * 119.99588 * 180.02562 * 8 7 6 10 10 C 1.46851 * 111.00122 * 124.20251 * 9 8 7 11 11 C 1.53030 * 109.52255 * 174.16061 * 10 9 8 12 12 C 1.53124 * 109.27759 * 59.18437 * 11 10 9 13 13 C 1.53121 * 109.15839 * 302.34400 * 12 11 10 14 14 H 1.08999 * 109.50278 * 297.71228 * 13 12 11 15 15 C 1.50701 * 109.50279 * 177.59596 * 13 12 11 16 16 H 1.07996 * 120.00012 * 0.19260 * 15 13 12 17 17 C 1.37876 * 120.00041 * 180.19394 * 15 13 12 18 18 N 1.31514 * 120.00051 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 120.00044 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47408 * 89.99639 * 19 17 15 21 21 H 1.48497 * 109.47218 * 209.99711 * 19 17 15 22 22 H 1.48502 * 109.47039 * 329.99538 * 19 17 15 23 23 C 1.46844 * 110.99521 * 359.97438 * 9 8 7 24 24 C 1.39883 * 120.01242 * 359.97438 * 8 7 6 25 25 N 1.31455 * 120.02527 * 0.02562 * 24 8 7 26 26 H 1.09001 * 109.46967 * 59.99838 * 1 2 3 27 27 H 1.08998 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47132 * 300.00382 * 1 2 3 29 29 H 1.08002 * 120.00820 * 359.95144 * 6 5 3 30 30 H 1.08999 * 109.46192 * 294.18108 * 10 9 8 31 31 H 1.08997 * 109.45923 * 54.14408 * 10 9 8 32 32 H 1.09002 * 109.50850 * 299.24432 * 11 10 9 33 33 H 1.08998 * 109.53847 * 179.13947 * 11 10 9 34 34 H 1.09004 * 109.52430 * 182.44236 * 12 11 10 35 35 H 1.09001 * 109.52080 * 62.24736 * 12 11 10 36 36 H 0.97001 * 119.99996 * 180.02562 * 18 17 15 37 37 H 1.09009 * 109.46304 * 305.85223 * 23 9 8 38 38 H 1.08999 * 109.46940 * 65.83398 * 23 9 8 39 39 H 1.08002 * 119.98835 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4022 2.2193 0.0005 5 6 3.5387 1.2777 0.0006 6 6 4.1722 2.5204 0.0011 7 7 5.4906 2.5889 0.0021 8 6 6.2131 1.4747 0.0021 9 7 7.5949 1.5463 0.0037 10 6 8.1591 0.8031 1.1377 11 6 9.6852 0.7814 1.0265 12 6 10.2122 2.2191 1.0216 13 6 9.5723 2.9849 -0.1398 14 1 9.8610 2.5224 -1.0836 15 6 10.0404 4.4172 -0.1166 16 1 10.7281 4.7482 0.6475 17 6 9.5907 5.3050 -1.0708 18 7 9.9988 6.5550 -1.0503 19 14 8.4007 4.7326 -2.3921 20 1 7.0062 4.9207 -1.9175 21 1 8.6142 5.5270 -3.6284 22 1 8.6357 3.2949 -2.6807 23 6 8.0494 2.9426 0.0047 24 6 5.5775 0.2286 0.0016 25 7 4.2647 0.1598 0.0006 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.5843 3.4264 0.0003 30 1 7.8697 1.2881 2.0699 31 1 7.7796 -0.2186 1.1271 32 1 9.9757 0.2842 0.1010 33 1 10.1050 0.2429 1.8761 34 1 11.2953 2.2097 0.8989 35 1 9.9555 2.7043 1.9633 36 1 9.6822 7.1797 -1.7214 37 1 7.5904 3.4746 -0.8288 38 1 7.7607 3.4180 0.9421 39 1 6.1655 -0.6773 0.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603403104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:56 Heat of formation + Delta-G solvation = -40.417662 kcal Electronic energy + Delta-G solvation = -23237.549978 eV Core-core repulsion = 19759.101033 eV Total energy + Delta-G solvation = -3478.448945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.72639 -41.36077 -39.94010 -37.65416 -36.16123 -35.33735 -34.20151 -32.17998 -31.76311 -28.78205 -27.35086 -26.73766 -25.62786 -24.28443 -23.24767 -22.46265 -20.64793 -19.58979 -19.02526 -18.95315 -18.32644 -17.87802 -17.60939 -16.65042 -16.42527 -16.16011 -15.59637 -15.55108 -15.35444 -14.90968 -14.82994 -14.44594 -14.30642 -14.21008 -13.69617 -13.16274 -13.04094 -13.00966 -12.70927 -12.58536 -12.24399 -12.09316 -12.07136 -11.86449 -11.77441 -11.58297 -11.15045 -11.10253 -10.99987 -10.71546 -10.37139 -9.46486 -8.36292 -6.39372 -0.93368 -0.13572 1.12529 1.26744 1.29604 1.37543 1.42418 2.18807 2.25909 2.49232 2.85947 2.95134 3.07174 3.23716 3.70218 3.82732 3.91709 4.05389 4.14782 4.27495 4.32930 4.33095 4.46040 4.50463 4.62015 4.69692 4.70730 4.79484 4.92842 4.93933 5.03447 5.10315 5.25277 5.49189 5.52967 5.63068 5.67755 5.77328 6.03833 6.28255 6.42901 6.57516 6.70523 7.26753 8.80268 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020490 B = 0.004558 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.215752 B = 6141.877536 C = 7172.747042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.343 6.343 3 C 0.540 3.460 4 O -0.520 6.520 5 C -0.027 4.027 6 C 0.154 3.846 7 N -0.519 5.519 8 C 0.298 3.702 9 N -0.470 5.470 10 C 0.057 3.943 11 C -0.109 4.109 12 C -0.105 4.105 13 C 0.014 3.986 14 H 0.030 0.970 15 C -0.515 4.515 16 H 0.043 0.957 17 C 0.022 3.978 18 N -0.943 5.943 19 Si 0.934 3.066 20 H -0.274 1.274 21 H -0.298 1.298 22 H -0.248 1.248 23 C 0.072 3.928 24 C 0.053 3.947 25 N -0.371 5.371 26 H 0.066 0.934 27 H 0.136 0.864 28 H 0.067 0.933 29 H 0.188 0.812 30 H 0.049 0.951 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.266 0.734 37 H 0.051 0.949 38 H 0.038 0.962 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 -19.160 3.963 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.257 6.257 3 C 0.383 3.617 4 O -0.409 6.409 5 C -0.164 4.164 6 C -0.007 4.007 7 N -0.239 5.239 8 C 0.060 3.940 9 N -0.185 5.185 10 C -0.067 4.067 11 C -0.147 4.147 12 C -0.143 4.143 13 C -0.005 4.005 14 H 0.048 0.952 15 C -0.554 4.554 16 H 0.061 0.939 17 C -0.176 4.176 18 N -0.583 5.583 19 Si 0.762 3.238 20 H -0.201 1.201 21 H -0.225 1.225 22 H -0.172 1.172 23 C -0.054 4.054 24 C -0.118 4.118 25 N -0.087 5.087 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.086 0.914 29 H 0.205 0.795 30 H 0.068 0.932 31 H 0.144 0.856 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -13.972 -18.917 3.483 23.774 hybrid contribution -0.779 1.486 -0.337 1.712 sum -14.751 -17.430 3.146 23.050 Atomic orbital electron populations 1.23697 0.73838 1.06167 1.02970 1.86657 1.25396 1.30677 1.82999 1.20317 0.87095 0.82070 0.72188 1.90860 1.66137 1.36718 1.47186 1.20756 0.92299 0.91549 1.11778 1.23773 0.89662 0.98567 0.88663 1.68751 1.07384 1.31566 1.16207 1.21783 0.91505 0.91405 0.89299 1.58882 1.01712 1.16505 1.41407 1.22600 0.96832 0.99161 0.88079 1.21675 0.92547 0.96165 1.04297 1.21510 1.00028 0.95431 0.97311 1.19224 0.89968 0.94417 0.96924 0.95160 1.21349 1.26864 0.94491 1.12662 0.93897 1.25738 0.97573 0.94755 0.99492 1.70013 1.46506 1.04967 1.36856 0.86075 0.79653 0.79386 0.78713 1.20064 1.22542 1.17226 1.22451 0.98125 0.84558 1.00259 1.23914 0.89954 0.97671 1.00298 1.68373 1.06845 1.29276 1.04226 0.91537 0.84626 0.91381 0.79512 0.93219 0.85565 0.90300 0.87568 0.92123 0.93427 0.92515 0.93071 0.94349 0.76277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.34 -7.69 10.39 -56.33 -0.59 -8.28 16 3 C 0.54 14.32 7.94 70.32 0.56 14.87 16 4 O -0.52 -15.27 16.12 19.89 0.32 -14.95 16 5 C -0.03 -0.75 6.74 41.73 0.28 -0.47 16 6 C 0.15 4.66 10.76 84.97 0.91 5.57 16 7 N -0.52 -18.24 8.82 -191.70 -1.69 -19.93 16 8 C 0.30 9.12 6.39 133.34 0.85 9.97 16 9 N -0.47 -15.00 4.67 -701.52 -3.28 -18.27 16 10 C 0.06 1.30 5.24 86.32 0.45 1.75 16 11 C -0.11 -2.55 6.09 30.65 0.19 -2.36 16 12 C -0.11 -3.63 5.23 30.68 0.16 -3.47 16 13 C 0.01 0.62 1.85 -11.49 -0.02 0.60 16 14 H 0.03 1.39 7.21 -2.39 -0.02 1.37 16 15 C -0.52 -28.84 9.15 25.60 0.23 -28.61 16 16 H 0.04 2.63 7.99 -2.91 -0.02 2.60 16 17 C 0.02 1.32 5.45 84.65 0.46 1.78 16 18 N -0.94 -59.27 13.96 21.45 0.30 -58.97 16 19 Si 0.93 46.73 24.36 68.60 1.67 48.41 16 20 H -0.27 -13.73 6.88 99.48 0.68 -13.04 16 21 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 22 H -0.25 -11.71 6.53 99.48 0.65 -11.06 16 23 C 0.07 3.03 3.40 86.32 0.29 3.33 16 24 C 0.05 1.24 10.33 85.15 0.88 2.12 16 25 N -0.37 -9.61 10.26 -183.83 -1.89 -11.49 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.19 5.15 7.63 -2.91 -0.02 5.13 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.13 1.77 6.67 -2.39 -0.02 1.75 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 37 H 0.05 2.40 2.86 -2.38 -0.01 2.40 16 38 H 0.04 1.70 8.11 -2.39 -0.02 1.68 16 39 H 0.22 3.19 7.14 -2.91 -0.02 3.17 16 Total: -1.00 -73.11 319.30 2.29 -70.81 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 0.99 Total: 6.03 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 6.45 Total: 6.63 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -6.55 Total: -108.67 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.26 Total: -23.22 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.67 Total: 48.41 kcal Total: -73.11 2.29 -70.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603403104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.395 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds