Wall clock time and date at job start Tue Mar 31 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34639 * 116.99972 * 2 1 4 4 O 1.21393 * 120.00321 * 359.97438 * 3 2 1 5 5 C 1.48364 * 119.99717 * 180.02562 * 3 2 1 6 6 C 1.39106 * 120.51032 * 180.25768 * 5 3 2 7 7 C 1.39874 * 118.18662 * 180.20986 * 6 5 3 8 8 N 1.38505 * 120.51670 * 179.80203 * 7 6 5 9 9 C 1.46844 * 110.99937 * 55.51062 * 8 7 6 10 10 C 1.53037 * 109.52530 * 185.83640 * 9 8 7 11 11 C 1.53112 * 109.27866 * 300.82492 * 10 9 8 12 12 C 1.53121 * 109.16332 * 57.65236 * 11 10 9 13 13 H 1.09003 * 109.50110 * 62.28509 * 12 11 10 14 14 C 1.50692 * 109.50673 * 182.40163 * 12 11 10 15 15 H 1.07998 * 120.00099 * 119.80429 * 14 12 11 16 16 C 1.37875 * 120.00050 * 299.80374 * 14 12 11 17 17 N 1.31516 * 120.00391 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 120.00135 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46972 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47129 * 120.00087 * 18 16 14 21 21 H 1.48499 * 109.47391 * 240.00124 * 18 16 14 22 22 C 1.46847 * 110.99923 * 179.72256 * 8 7 6 23 23 N 1.32838 * 118.96901 * 359.53186 * 7 6 5 24 24 C 1.31845 * 120.91793 * 0.24754 * 23 7 6 25 25 N 1.31544 * 122.01923 * 359.97438 * 24 23 7 26 26 H 1.09003 * 109.46926 * 60.00513 * 1 2 3 27 27 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47085 * 300.00367 * 1 2 3 29 29 H 1.08001 * 120.90962 * 0.02562 * 6 5 3 30 30 H 1.09004 * 109.46567 * 305.86273 * 9 8 7 31 31 H 1.09001 * 109.45913 * 65.82413 * 9 8 7 32 32 H 1.08999 * 109.50165 * 180.87802 * 10 9 8 33 33 H 1.09005 * 109.53007 * 60.78347 * 10 9 8 34 34 H 1.08997 * 109.52602 * 297.74621 * 11 10 9 35 35 H 1.09000 * 109.57601 * 177.58363 * 11 10 9 36 36 H 0.96995 * 120.00499 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.46280 * 294.17878 * 22 8 7 38 38 H 1.09006 * 109.46095 * 54.14745 * 22 8 7 39 39 H 1.07999 * 118.98931 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4021 2.2178 -0.0005 5 6 3.5448 1.2772 -0.0006 6 6 4.1874 2.5110 0.0048 7 6 5.5861 2.5274 -0.0005 8 7 6.2753 3.7288 0.0004 9 6 5.8681 4.5682 1.1343 10 6 6.5387 5.9393 1.0225 11 6 8.0592 5.7595 1.0165 12 6 8.4523 4.8424 -0.1450 13 1 8.1695 5.3088 -1.0887 14 6 9.9414 4.6125 -0.1229 15 1 10.3317 3.6113 -0.0156 16 6 10.8056 5.6804 -0.2397 17 7 10.3304 6.8997 -0.3708 18 14 12.6516 5.3956 -0.2115 19 1 12.9262 3.9445 -0.0556 20 1 13.2463 5.8775 -1.4841 21 1 13.2498 6.1382 0.9268 22 6 7.7263 3.5031 0.0008 23 7 6.2431 1.3729 -0.0009 24 6 5.5951 0.2247 -0.0013 25 7 4.2810 0.1655 -0.0008 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.6219 3.4310 0.0099 30 1 4.7852 4.6916 1.1246 31 1 6.1707 4.0910 2.0665 32 1 6.2485 6.5567 1.8726 33 1 6.2258 6.4236 0.0974 34 1 8.3768 5.3114 1.9580 35 1 8.5412 6.7294 0.8938 36 1 10.9384 7.6511 -0.4526 37 1 8.0201 3.0308 0.9382 38 1 7.9929 2.8529 -0.8325 39 1 6.1606 -0.6954 -0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603403148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:56 Heat of formation + Delta-G solvation = -24.214401 kcal Electronic energy + Delta-G solvation = -22926.914194 eV Core-core repulsion = 19449.167875 eV Total energy + Delta-G solvation = -3477.746319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.44459 -40.32554 -38.44205 -36.77622 -34.60563 -33.32105 -32.19723 -30.57524 -30.00145 -28.35252 -25.71432 -25.15981 -24.27724 -23.08360 -21.52483 -21.15622 -18.95893 -18.65137 -17.80490 -16.93334 -16.70414 -16.30672 -15.81473 -15.52352 -15.08494 -14.75339 -14.45783 -14.06848 -13.81776 -13.75982 -13.39231 -13.04456 -12.62254 -12.54241 -12.41124 -11.97726 -11.14662 -11.08534 -11.07884 -11.03524 -10.92333 -10.73310 -10.67816 -10.26866 -10.10902 -9.95706 -9.60233 -9.38640 -9.25970 -8.81605 -8.39862 -8.17823 -6.04644 -4.10654 0.30484 0.96104 2.21489 2.24927 3.27367 3.35793 3.39546 3.53516 3.79368 3.86304 4.24417 4.41792 4.67679 4.79483 4.81990 4.90071 5.11142 5.23809 5.26371 5.36425 5.42938 5.45116 5.74608 5.86992 5.94858 6.10173 6.27631 6.33266 6.43962 6.57864 6.60529 6.79250 6.99995 7.14382 7.24068 7.41200 7.46836 7.68544 7.93106 8.02310 8.09247 8.36963 8.92966 9.54365 11.01852 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.003383 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.178042 B = 8275.335510 C = 8920.607312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.332 6.332 3 C 0.527 3.473 4 O -0.491 6.491 5 C 0.151 3.849 6 C -0.183 4.183 7 C 0.372 3.628 8 N -0.467 5.467 9 C 0.066 3.934 10 C -0.120 4.120 11 C -0.115 4.115 12 C 0.050 3.950 13 H 0.036 0.964 14 C -0.513 4.513 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.075 3.925 23 N -0.534 5.534 24 C 0.321 3.679 25 N -0.512 5.512 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.160 0.840 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.096 0.904 36 H 0.260 0.740 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 -10.263 2.641 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.247 6.247 3 C 0.369 3.631 4 O -0.376 6.376 5 C 0.008 3.992 6 C -0.210 4.210 7 C 0.129 3.871 8 N -0.182 5.182 9 C -0.060 4.060 10 C -0.157 4.157 11 C -0.153 4.153 12 C 0.031 3.969 13 H 0.054 0.946 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.050 4.050 23 N -0.255 5.255 24 C 0.032 3.968 25 N -0.231 5.231 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.177 0.823 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.397 -10.267 2.208 18.638 hybrid contribution 0.537 0.322 0.453 0.773 sum -14.860 -9.945 2.661 18.078 Atomic orbital electron populations 1.23379 0.75890 1.04079 1.02732 1.86676 1.23308 1.31465 1.83222 1.20759 0.87612 0.81864 0.72868 1.90861 1.65716 1.36178 1.44886 1.20028 0.90978 0.89943 0.98259 1.22365 0.94686 0.99525 1.04437 1.20400 0.89518 0.89850 0.87341 1.58823 1.10629 1.08871 1.39918 1.22320 0.99751 0.94826 0.89062 1.21753 0.99152 0.93332 1.01502 1.21738 0.90597 1.04333 0.98680 1.18783 0.93901 0.88751 0.95419 0.94628 1.21104 0.90388 0.93496 1.50190 0.92433 1.24930 0.98784 0.95153 0.94951 1.69883 1.34459 0.98446 1.49956 0.86534 0.85532 0.78357 0.77573 1.19726 1.21025 1.21063 1.22442 0.79878 1.01313 1.01323 1.68504 1.41711 0.98526 1.16786 1.24862 0.86661 0.95828 0.89497 1.68400 1.08597 1.30540 1.15594 0.91630 0.87677 0.91659 0.82271 0.90913 0.93592 0.92252 0.91486 0.94622 0.88540 0.93004 0.93759 0.90523 0.78034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.33 -3.91 10.42 -40.33 -0.42 -4.33 16 3 C 0.53 7.11 7.97 34.90 0.28 7.38 16 4 O -0.49 -7.18 16.20 -19.18 -0.31 -7.49 16 5 C 0.15 2.16 6.78 -82.72 -0.56 1.59 16 6 C -0.18 -2.69 8.81 -38.65 -0.34 -3.03 16 7 C 0.37 6.14 6.42 -154.85 -0.99 5.15 16 8 N -0.47 -8.41 4.68 -173.03 -0.81 -9.22 16 9 C 0.07 1.05 5.25 -3.84 -0.02 1.03 16 10 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 11 C -0.12 -2.55 5.03 -26.61 -0.13 -2.68 16 12 C 0.05 1.20 2.26 -91.69 -0.21 0.99 16 13 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.51 -13.59 8.56 -34.44 -0.29 -13.88 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -24.54 11.36 55.43 0.63 -23.91 16 18 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C 0.08 1.56 3.89 -3.83 -0.01 1.54 16 23 N -0.53 -8.63 8.83 -13.83 -0.12 -8.75 16 24 C 0.32 4.31 12.27 -92.33 -1.13 3.18 16 25 N -0.51 -7.19 10.25 -11.23 -0.12 -7.31 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.16 2.17 6.88 -52.49 -0.36 1.80 16 30 H 0.07 0.99 6.73 -51.93 -0.35 0.64 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.08 1.64 7.73 -51.93 -0.40 1.24 16 39 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -29.56 326.67 -9.06 -38.62 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.20 Total: -0.24 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.61 Total: 1.93 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.42 Total: -49.19 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.73 Total: -11.81 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.56 -9.06 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603403148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.402 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds