Wall clock time and date at job start Tue Mar 31 2020 06:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34639 * 116.99972 * 2 1 4 4 O 1.21393 * 120.00321 * 359.97438 * 3 2 1 5 5 C 1.48364 * 119.99717 * 180.02562 * 3 2 1 6 6 C 1.39106 * 120.51032 * 180.25768 * 5 3 2 7 7 C 1.39874 * 118.18662 * 180.20986 * 6 5 3 8 8 N 1.38505 * 120.51670 * 179.80203 * 7 6 5 9 9 C 1.46844 * 110.99937 * 55.51062 * 8 7 6 10 10 C 1.53037 * 109.52530 * 185.83640 * 9 8 7 11 11 C 1.53112 * 109.27866 * 300.82492 * 10 9 8 12 12 C 1.53121 * 109.16332 * 57.65236 * 11 10 9 13 13 H 1.09003 * 109.50110 * 62.28509 * 12 11 10 14 14 C 1.50692 * 109.50673 * 182.40163 * 12 11 10 15 15 H 1.07998 * 120.00099 * 119.80429 * 14 12 11 16 16 C 1.37875 * 120.00050 * 299.80374 * 14 12 11 17 17 N 1.31516 * 120.00391 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 120.00135 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46972 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47129 * 120.00087 * 18 16 14 21 21 H 1.48499 * 109.47391 * 240.00124 * 18 16 14 22 22 C 1.46847 * 110.99923 * 179.72256 * 8 7 6 23 23 N 1.32838 * 118.96901 * 359.53186 * 7 6 5 24 24 C 1.31845 * 120.91793 * 0.24754 * 23 7 6 25 25 N 1.31544 * 122.01923 * 359.97438 * 24 23 7 26 26 H 1.09003 * 109.46926 * 60.00513 * 1 2 3 27 27 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47085 * 300.00367 * 1 2 3 29 29 H 1.08001 * 120.90962 * 0.02562 * 6 5 3 30 30 H 1.09004 * 109.46567 * 305.86273 * 9 8 7 31 31 H 1.09001 * 109.45913 * 65.82413 * 9 8 7 32 32 H 1.08999 * 109.50165 * 180.87802 * 10 9 8 33 33 H 1.09005 * 109.53007 * 60.78347 * 10 9 8 34 34 H 1.08997 * 109.52602 * 297.74621 * 11 10 9 35 35 H 1.09000 * 109.57601 * 177.58363 * 11 10 9 36 36 H 0.96995 * 120.00499 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.46280 * 294.17878 * 22 8 7 38 38 H 1.09006 * 109.46095 * 54.14745 * 22 8 7 39 39 H 1.07999 * 118.98931 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4021 2.2178 -0.0005 5 6 3.5448 1.2772 -0.0006 6 6 4.1874 2.5110 0.0048 7 6 5.5861 2.5274 -0.0005 8 7 6.2753 3.7288 0.0004 9 6 5.8681 4.5682 1.1343 10 6 6.5387 5.9393 1.0225 11 6 8.0592 5.7595 1.0165 12 6 8.4523 4.8424 -0.1450 13 1 8.1695 5.3088 -1.0887 14 6 9.9414 4.6125 -0.1229 15 1 10.3317 3.6113 -0.0156 16 6 10.8056 5.6804 -0.2397 17 7 10.3304 6.8997 -0.3708 18 14 12.6516 5.3956 -0.2115 19 1 12.9262 3.9445 -0.0556 20 1 13.2463 5.8775 -1.4841 21 1 13.2498 6.1382 0.9268 22 6 7.7263 3.5031 0.0008 23 7 6.2431 1.3729 -0.0009 24 6 5.5951 0.2247 -0.0013 25 7 4.2810 0.1655 -0.0008 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.6219 3.4310 0.0099 30 1 4.7852 4.6916 1.1246 31 1 6.1707 4.0910 2.0665 32 1 6.2485 6.5567 1.8726 33 1 6.2258 6.4236 0.0974 34 1 8.3768 5.3114 1.9580 35 1 8.5412 6.7294 0.8938 36 1 10.9384 7.6511 -0.4526 37 1 8.0201 3.0308 0.9382 38 1 7.9929 2.8529 -0.8325 39 1 6.1606 -0.6954 -0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603403148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:55 Heat of formation + Delta-G solvation = -40.858579 kcal Electronic energy + Delta-G solvation = -22927.635940 eV Core-core repulsion = 19449.167875 eV Total energy + Delta-G solvation = -3478.468065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.59231 -41.36157 -39.85221 -37.72667 -36.19514 -34.71056 -33.73650 -32.01072 -31.60779 -29.13251 -27.21782 -26.57263 -25.64887 -24.38769 -23.08859 -22.30524 -20.59171 -19.75055 -19.08853 -18.24353 -17.84544 -17.63069 -17.15812 -16.68504 -16.40874 -16.26178 -15.80443 -15.44774 -15.13774 -14.77995 -14.64505 -14.42044 -14.27786 -14.15894 -13.51852 -13.07761 -12.87939 -12.75634 -12.54814 -12.24579 -12.14371 -12.00283 -11.88098 -11.85003 -11.82295 -11.44955 -11.23652 -11.02277 -10.72808 -10.49579 -10.39484 -9.54830 -8.09357 -6.22447 -0.80578 -0.19443 1.18913 1.29075 1.41314 1.44005 1.54840 2.27761 2.46127 2.65390 2.87108 3.13175 3.18859 3.52630 3.69727 3.93906 4.07768 4.15428 4.24642 4.27383 4.34067 4.41679 4.49344 4.59464 4.70997 4.77944 4.85048 4.95967 5.02585 5.07442 5.08509 5.18677 5.42355 5.54322 5.63775 5.82364 5.96428 6.02233 6.14161 6.36893 6.42612 6.87648 6.94167 7.45517 8.95877 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.003383 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.178042 B = 8275.335510 C = 8920.607312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.531 3.469 4 O -0.505 6.505 5 C 0.150 3.850 6 C -0.180 4.180 7 C 0.360 3.640 8 N -0.478 5.478 9 C 0.067 3.933 10 C -0.111 4.111 11 C -0.109 4.109 12 C 0.049 3.951 13 H 0.000 1.000 14 C -0.533 4.533 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.914 5.914 18 Si 0.953 3.047 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.279 1.279 22 C 0.098 3.902 23 N -0.557 5.557 24 C 0.324 3.676 25 N -0.511 5.511 26 H 0.068 0.932 27 H 0.136 0.864 28 H 0.070 0.930 29 H 0.170 0.830 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.030 0.970 35 H 0.064 0.936 36 H 0.261 0.739 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.968 -11.712 3.280 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C 0.373 3.627 4 O -0.393 6.393 5 C 0.006 3.994 6 C -0.207 4.207 7 C 0.117 3.883 8 N -0.194 5.194 9 C -0.057 4.057 10 C -0.149 4.149 11 C -0.147 4.147 12 C 0.030 3.970 13 H 0.018 0.982 14 C -0.572 4.572 15 H 0.070 0.930 16 C -0.182 4.182 17 N -0.553 5.553 18 Si 0.779 3.221 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.205 1.205 22 C -0.028 4.028 23 N -0.278 5.278 24 C 0.036 3.964 25 N -0.230 5.230 26 H 0.087 0.913 27 H 0.154 0.846 28 H 0.088 0.912 29 H 0.188 0.812 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -16.783 -11.747 2.850 20.683 hybrid contribution 0.865 0.667 0.237 1.118 sum -15.918 -11.080 3.087 19.639 Atomic orbital electron populations 1.23752 0.73499 1.06353 1.03174 1.86657 1.25625 1.30395 1.82601 1.20591 0.87220 0.82221 0.72639 1.90853 1.65917 1.36749 1.45758 1.20248 0.91738 0.89874 0.97555 1.22356 0.93728 1.00272 1.04306 1.20378 0.90153 0.89432 0.88359 1.58782 1.08863 1.10323 1.41388 1.22381 1.01422 0.93303 0.88627 1.21641 0.95741 0.95047 1.02421 1.21530 0.93856 1.01915 0.97398 1.18685 0.93216 0.90663 0.94406 0.98184 1.21448 0.92182 0.93311 1.50212 0.92986 1.25663 1.02875 0.94967 0.94718 1.70013 1.35726 0.99041 1.50522 0.85584 0.80599 0.78377 0.77567 1.19230 1.20799 1.20524 1.21934 0.81840 0.98764 1.00264 1.68499 1.42660 0.99215 1.17461 1.25562 0.86678 0.96144 0.88045 1.68490 1.08816 1.30426 1.15246 0.91287 0.84556 0.91156 0.81230 0.87649 0.93234 0.89421 0.92189 0.95151 0.91699 0.92982 0.94403 0.91928 0.74533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.56 113.37 1.20 1.51 16 2 O -0.34 -7.19 10.42 -55.47 -0.58 -7.76 16 3 C 0.53 13.29 7.97 70.52 0.56 13.85 16 4 O -0.51 -13.87 16.20 20.18 0.33 -13.54 16 5 C 0.15 3.99 6.78 41.82 0.28 4.28 16 6 C -0.18 -4.98 8.81 22.87 0.20 -4.78 16 7 C 0.36 11.49 6.42 133.28 0.86 12.34 16 8 N -0.48 -17.00 4.68 -701.34 -3.28 -20.28 16 9 C 0.07 2.06 5.25 86.33 0.45 2.51 16 10 C -0.11 -3.83 6.09 30.64 0.19 -3.64 16 11 C -0.11 -4.91 5.03 30.67 0.15 -4.75 16 12 C 0.05 2.43 2.26 -11.49 -0.03 2.41 16 13 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 14 C -0.53 -29.04 8.56 25.60 0.22 -28.82 16 15 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 16 C 0.02 0.92 5.30 84.65 0.45 1.37 16 17 N -0.91 -51.81 11.36 21.45 0.24 -51.56 16 18 Si 0.95 43.18 29.54 68.60 2.03 45.20 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 C 0.10 4.12 3.89 86.33 0.34 4.46 16 23 N -0.56 -17.39 8.83 -197.65 -1.74 -19.14 16 24 C 0.32 8.05 12.27 180.94 2.22 10.27 16 25 N -0.51 -13.26 10.25 -189.45 -1.94 -15.21 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.14 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.17 4.26 6.88 -2.91 -0.02 4.24 16 30 H 0.11 2.57 6.73 -2.38 -0.02 2.56 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 3.34 6.16 -2.39 -0.01 3.33 16 36 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 37 H 0.04 1.61 8.12 -2.39 -0.02 1.59 16 38 H 0.06 2.76 7.73 -2.38 -0.02 2.74 16 39 H 0.24 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -64.89 326.67 3.20 -61.68 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.06 Total: 9.60 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 7.09 Total: 11.00 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -6.72 Total: -106.18 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.25 Total: -21.31 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -64.89 3.20 -61.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603403148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.824 kcal (2) G-P(sol) polarization free energy of solvation -64.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds