Wall clock time and date at job start Tue Mar 31 2020 06:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34643 * 116.99711 * 2 1 4 4 O 1.21388 * 120.00190 * 359.97438 * 3 2 1 5 5 C 1.48361 * 119.99543 * 180.02562 * 3 2 1 6 6 C 1.39114 * 120.50606 * 180.02562 * 5 3 2 7 7 C 1.39878 * 118.18080 * 179.97438 * 6 5 3 8 8 N 1.38505 * 120.50982 * 179.97438 * 7 6 5 9 9 C 1.46843 * 110.99841 * 56.05334 * 8 7 6 10 10 C 1.53041 * 109.52189 * 174.15950 * 9 8 7 11 11 C 1.53120 * 109.27760 * 59.17418 * 10 9 8 12 12 C 1.53119 * 109.16199 * 302.34289 * 11 10 9 13 13 H 1.08998 * 109.50196 * 297.71851 * 12 11 10 14 14 C 1.50704 * 109.50287 * 177.63694 * 12 11 10 15 15 H 1.08004 * 119.99843 * 245.43749 * 14 12 11 16 16 C 1.37876 * 120.00017 * 65.43743 * 14 12 11 17 17 N 1.31515 * 120.00010 * 9.56623 * 16 14 12 18 18 Si 1.86793 * 119.99838 * 189.56587 * 16 14 12 19 19 H 1.48498 * 109.47092 * 94.99292 * 18 16 14 20 20 H 1.48509 * 109.46934 * 214.99181 * 18 16 14 21 21 H 1.48499 * 109.47532 * 334.98886 * 18 16 14 22 22 C 1.46839 * 111.00105 * 291.83552 * 8 7 6 23 23 N 1.32831 * 118.97238 * 359.97438 * 7 6 5 24 24 C 1.31851 * 120.92133 * 359.97438 * 23 7 6 25 25 N 1.31545 * 122.01535 * 0.02562 * 24 23 7 26 26 H 1.08996 * 109.47027 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46910 * 299.99749 * 1 2 3 28 28 H 1.08993 * 109.47514 * 60.00065 * 1 2 3 29 29 H 1.07993 * 120.91265 * 0.24813 * 6 5 3 30 30 H 1.09003 * 109.45743 * 294.16487 * 9 8 7 31 31 H 1.08991 * 109.46668 * 54.14766 * 9 8 7 32 32 H 1.09004 * 109.50322 * 179.11458 * 10 9 8 33 33 H 1.08999 * 109.49957 * 299.23373 * 10 9 8 34 34 H 1.08996 * 109.52542 * 62.25085 * 11 10 9 35 35 H 1.09000 * 109.52042 * 182.44168 * 11 10 9 36 36 H 0.96995 * 120.00519 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.46653 * 305.85519 * 22 8 7 38 38 H 1.08999 * 109.46503 * 65.82784 * 22 8 7 39 39 H 1.07994 * 118.99146 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4021 2.2177 -0.0005 5 6 3.5448 1.2773 -0.0006 6 6 4.1873 2.5112 0.0000 7 6 5.5860 2.5276 -0.0001 8 7 6.2751 3.7291 -0.0001 9 6 5.8729 4.5664 1.1372 10 6 6.7540 5.8167 1.1886 11 6 6.6036 6.5954 -0.1212 12 6 6.9824 5.6857 -1.2931 13 1 8.0274 5.3897 -1.2010 14 6 6.7816 6.4262 -2.5902 15 1 6.0291 6.0945 -3.2904 16 6 7.5584 7.5270 -2.8830 17 7 8.5945 7.8203 -2.1279 18 14 7.1393 8.6017 -4.3522 19 1 6.3088 9.7488 -3.9055 20 1 8.3921 9.1079 -4.9685 21 1 6.3842 7.8029 -5.3506 22 6 6.0946 4.4392 -1.2726 23 7 6.2430 1.3732 -0.0001 24 6 5.5951 0.2248 0.0004 25 7 4.2810 0.1656 0.0005 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 3.6218 3.4312 0.0048 30 1 4.8302 4.8616 1.0198 31 1 5.9887 4.0023 2.0625 32 1 6.4449 6.4456 2.0235 33 1 7.7954 5.5227 1.3197 34 1 5.5701 6.9229 -0.2336 35 1 7.2623 7.4637 -0.1064 36 1 9.1413 8.5945 -2.3340 37 1 6.3715 3.7827 -2.0975 38 1 5.0509 4.7350 -1.3786 39 1 6.1606 -0.6952 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603403149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:01 Heat of formation + Delta-G solvation = -21.524024 kcal Electronic energy + Delta-G solvation = -23047.679387 eV Core-core repulsion = 19570.049731 eV Total energy + Delta-G solvation = -3477.629656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.54000 -40.34504 -38.47162 -36.81490 -34.59519 -33.40296 -32.28542 -30.49480 -30.03241 -28.36640 -25.37584 -25.09124 -24.91067 -22.95964 -21.67899 -21.18950 -19.15785 -18.46556 -17.89396 -16.98677 -16.74469 -16.36185 -15.80471 -15.64511 -15.17906 -14.89288 -14.47686 -14.14265 -13.90375 -13.58727 -13.43689 -12.82410 -12.65880 -12.58268 -12.43559 -11.96099 -11.22145 -11.15794 -11.10696 -11.02530 -10.95532 -10.82713 -10.64207 -10.30780 -10.09604 -9.83750 -9.70691 -9.49061 -9.25134 -8.87149 -8.38835 -8.16220 -6.07195 -4.09663 0.19786 0.73314 2.17174 2.18186 3.28090 3.35498 3.37051 3.43298 3.60776 3.72398 4.32556 4.40104 4.56955 4.64032 4.80388 4.89156 5.13218 5.19305 5.25530 5.30725 5.41679 5.49014 5.77160 5.85880 5.93332 5.98423 6.15015 6.27098 6.44855 6.51666 6.62174 6.75293 6.96413 7.13381 7.24954 7.31696 7.49001 7.66195 7.89807 7.97758 8.00244 8.34712 8.93641 9.53957 11.01912 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020187 B = 0.003853 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.682555 B = 7265.950057 C = 7791.023780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.332 6.332 3 C 0.524 3.476 4 O -0.487 6.487 5 C 0.146 3.854 6 C -0.192 4.192 7 C 0.381 3.619 8 N -0.500 5.500 9 C 0.069 3.931 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.056 3.944 13 H 0.047 0.953 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.068 3.932 17 N -0.883 5.883 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.076 3.924 23 N -0.483 5.483 24 C 0.305 3.695 25 N -0.490 5.490 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.160 0.840 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.261 0.739 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.147 -13.467 6.913 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.247 6.247 3 C 0.366 3.634 4 O -0.373 6.373 5 C 0.001 3.999 6 C -0.218 4.218 7 C 0.140 3.860 8 N -0.222 5.222 9 C -0.058 4.058 10 C -0.154 4.154 11 C -0.147 4.147 12 C 0.037 3.963 13 H 0.065 0.935 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.135 4.135 17 N -0.521 5.521 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.048 4.048 23 N -0.199 5.199 24 C 0.015 3.985 25 N -0.207 5.207 26 H 0.124 0.876 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.177 0.823 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.261 -13.975 6.976 18.688 hybrid contribution -1.669 1.549 -0.879 2.441 sum -11.930 -12.426 6.098 18.273 Atomic orbital electron populations 1.23391 0.75753 1.04130 1.02818 1.86669 1.23434 1.31371 1.83229 1.20787 0.87607 0.81979 0.73064 1.90879 1.65609 1.36167 1.44606 1.20215 0.91145 0.89953 0.98551 1.23674 0.97668 0.99803 1.00697 1.20253 0.86440 0.92042 0.87292 1.58887 1.55577 1.01328 1.06452 1.22187 0.97932 0.94578 0.91109 1.21679 0.99727 0.94329 0.99640 1.21657 1.00120 1.00193 0.92716 1.18709 0.95555 0.88221 0.93834 0.93454 1.21035 1.19346 1.12371 1.03193 0.92682 1.24904 0.94345 0.97706 0.96500 1.69967 1.15477 1.27290 1.39367 0.86641 0.77926 0.80950 0.82870 1.20682 1.21235 1.19902 1.22544 0.99575 0.97009 0.85709 1.68162 1.42161 0.98214 1.11317 1.25049 0.86518 0.95985 0.90909 1.68387 1.08927 1.30783 1.12581 0.87610 0.91621 0.91554 0.82263 0.94400 0.91698 0.92538 0.91319 0.94446 0.90341 0.92908 0.91477 0.94956 0.77543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.33 -3.93 10.42 -40.34 -0.42 -4.35 16 3 C 0.52 7.21 7.97 34.90 0.28 7.49 16 4 O -0.49 -7.42 16.20 -19.18 -0.31 -7.73 16 5 C 0.15 2.10 6.78 -82.72 -0.56 1.54 16 6 C -0.19 -2.90 8.40 -38.64 -0.32 -3.22 16 7 C 0.38 6.30 5.71 -154.85 -0.88 5.42 16 8 N -0.50 -9.13 4.70 -173.04 -0.81 -9.94 16 9 C 0.07 1.13 5.06 -3.83 -0.02 1.11 16 10 C -0.12 -2.07 6.09 -26.65 -0.16 -2.23 16 11 C -0.11 -2.37 5.09 -26.61 -0.14 -2.51 16 12 C 0.06 1.33 2.13 -91.69 -0.19 1.14 16 13 H 0.05 1.28 8.09 -51.93 -0.42 0.86 16 14 C -0.52 -13.80 8.48 -34.44 -0.29 -14.09 16 15 H 0.05 1.45 7.77 -52.48 -0.41 1.04 16 16 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 17 N -0.88 -24.66 12.18 55.43 0.68 -23.99 16 18 Si 0.89 20.82 29.55 -169.99 -5.02 15.79 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.08 1.56 4.44 -3.84 -0.02 1.55 16 23 N -0.48 -7.61 10.45 -13.82 -0.14 -7.75 16 24 C 0.30 3.87 12.27 -92.32 -1.13 2.73 16 25 N -0.49 -6.67 10.25 -11.23 -0.12 -6.78 16 26 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.16 2.36 6.94 -52.49 -0.36 1.99 16 30 H 0.04 0.59 7.19 -51.93 -0.37 0.22 16 31 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.92 6.98 -51.93 -0.36 1.56 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 38 H 0.03 0.64 7.84 -51.93 -0.41 0.24 16 39 H 0.21 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -29.98 329.50 -8.93 -38.91 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.27 Total: -1.09 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -2.47 Total: 1.97 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.40 Total: -48.47 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.73 Total: -12.09 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.98 -8.93 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603403149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.388 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds