Wall clock time and date at job start Tue Mar 31 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34643 * 116.99711 * 2 1 4 4 O 1.21388 * 120.00190 * 359.97438 * 3 2 1 5 5 C 1.48361 * 119.99543 * 180.02562 * 3 2 1 6 6 C 1.39114 * 120.50606 * 180.02562 * 5 3 2 7 7 C 1.39878 * 118.18080 * 179.97438 * 6 5 3 8 8 N 1.38505 * 120.50982 * 179.97438 * 7 6 5 9 9 C 1.46843 * 110.99841 * 56.05334 * 8 7 6 10 10 C 1.53041 * 109.52189 * 174.15950 * 9 8 7 11 11 C 1.53120 * 109.27760 * 59.17418 * 10 9 8 12 12 C 1.53119 * 109.16199 * 302.34289 * 11 10 9 13 13 H 1.08998 * 109.50196 * 297.71851 * 12 11 10 14 14 C 1.50704 * 109.50287 * 177.63694 * 12 11 10 15 15 H 1.08004 * 119.99843 * 245.43749 * 14 12 11 16 16 C 1.37876 * 120.00017 * 65.43743 * 14 12 11 17 17 N 1.31515 * 120.00010 * 9.56623 * 16 14 12 18 18 Si 1.86793 * 119.99838 * 189.56587 * 16 14 12 19 19 H 1.48498 * 109.47092 * 94.99292 * 18 16 14 20 20 H 1.48509 * 109.46934 * 214.99181 * 18 16 14 21 21 H 1.48499 * 109.47532 * 334.98886 * 18 16 14 22 22 C 1.46839 * 111.00105 * 291.83552 * 8 7 6 23 23 N 1.32831 * 118.97238 * 359.97438 * 7 6 5 24 24 C 1.31851 * 120.92133 * 359.97438 * 23 7 6 25 25 N 1.31545 * 122.01535 * 0.02562 * 24 23 7 26 26 H 1.08996 * 109.47027 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46910 * 299.99749 * 1 2 3 28 28 H 1.08993 * 109.47514 * 60.00065 * 1 2 3 29 29 H 1.07993 * 120.91265 * 0.24813 * 6 5 3 30 30 H 1.09003 * 109.45743 * 294.16487 * 9 8 7 31 31 H 1.08991 * 109.46668 * 54.14766 * 9 8 7 32 32 H 1.09004 * 109.50322 * 179.11458 * 10 9 8 33 33 H 1.08999 * 109.49957 * 299.23373 * 10 9 8 34 34 H 1.08996 * 109.52542 * 62.25085 * 11 10 9 35 35 H 1.09000 * 109.52042 * 182.44168 * 11 10 9 36 36 H 0.96995 * 120.00519 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.46653 * 305.85519 * 22 8 7 38 38 H 1.08999 * 109.46503 * 65.82784 * 22 8 7 39 39 H 1.07994 * 118.99146 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4021 2.2177 -0.0005 5 6 3.5448 1.2773 -0.0006 6 6 4.1873 2.5112 0.0000 7 6 5.5860 2.5276 -0.0001 8 7 6.2751 3.7291 -0.0001 9 6 5.8729 4.5664 1.1372 10 6 6.7540 5.8167 1.1886 11 6 6.6036 6.5954 -0.1212 12 6 6.9824 5.6857 -1.2931 13 1 8.0274 5.3897 -1.2010 14 6 6.7816 6.4262 -2.5902 15 1 6.0291 6.0945 -3.2904 16 6 7.5584 7.5270 -2.8830 17 7 8.5945 7.8203 -2.1279 18 14 7.1393 8.6017 -4.3522 19 1 6.3088 9.7488 -3.9055 20 1 8.3921 9.1079 -4.9685 21 1 6.3842 7.8029 -5.3506 22 6 6.0946 4.4392 -1.2726 23 7 6.2430 1.3732 -0.0001 24 6 5.5951 0.2248 0.0004 25 7 4.2810 0.1656 0.0005 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 3.6218 3.4312 0.0048 30 1 4.8302 4.8616 1.0198 31 1 5.9887 4.0023 2.0625 32 1 6.4449 6.4456 2.0235 33 1 7.7954 5.5227 1.3197 34 1 5.5701 6.9229 -0.2336 35 1 7.2623 7.4637 -0.1064 36 1 9.1413 8.5945 -2.3340 37 1 6.3715 3.7827 -2.0975 38 1 5.0509 4.7350 -1.3786 39 1 6.1606 -0.6952 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603403149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:00 Heat of formation + Delta-G solvation = -39.137188 kcal Electronic energy + Delta-G solvation = -23048.443151 eV Core-core repulsion = 19570.049731 eV Total energy + Delta-G solvation = -3478.393420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.67342 -41.38960 -39.89910 -37.78845 -36.15410 -34.77390 -33.86341 -31.89680 -31.69124 -29.13943 -27.00551 -26.51179 -26.10641 -24.27462 -23.30592 -22.34692 -20.65642 -19.70375 -19.15605 -18.26844 -17.88444 -17.69547 -17.15903 -16.79963 -16.63470 -16.26160 -15.89921 -15.45132 -15.15270 -14.78786 -14.48197 -14.39643 -14.34612 -14.19510 -13.53368 -13.12557 -12.86751 -12.77492 -12.63929 -12.32673 -12.21179 -12.00984 -11.93315 -11.88132 -11.81477 -11.47090 -11.11539 -10.91143 -10.77485 -10.66493 -10.42141 -9.57346 -8.13463 -6.22321 -0.91902 -0.41230 1.11349 1.23674 1.41442 1.43298 1.52666 2.14683 2.44962 2.50967 2.74271 3.17464 3.28253 3.35795 3.57215 3.92328 4.06709 4.12666 4.20572 4.24650 4.30619 4.31842 4.43970 4.52705 4.68243 4.74155 4.81281 4.88997 4.96227 5.00420 5.07499 5.30030 5.40208 5.51562 5.63488 5.72618 5.98916 6.01870 6.07042 6.35354 6.36602 6.85983 6.88750 7.44452 8.95335 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020187 B = 0.003853 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.682555 B = 7265.950057 C = 7791.023780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.336 6.336 3 C 0.528 3.472 4 O -0.507 6.507 5 C 0.147 3.853 6 C -0.194 4.194 7 C 0.367 3.633 8 N -0.512 5.512 9 C 0.071 3.929 10 C -0.107 4.107 11 C -0.101 4.101 12 C 0.055 3.945 13 H 0.006 0.994 14 C -0.539 4.539 15 H 0.052 0.948 16 C 0.021 3.979 17 N -0.913 5.913 18 Si 0.950 3.050 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.269 1.269 22 C 0.093 3.907 23 N -0.504 5.504 24 C 0.313 3.687 25 N -0.487 5.487 26 H 0.139 0.861 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.160 0.840 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.262 0.738 37 H 0.053 0.947 38 H 0.037 0.963 39 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 -14.931 7.396 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.250 6.250 3 C 0.370 3.630 4 O -0.394 6.394 5 C 0.001 3.999 6 C -0.220 4.220 7 C 0.127 3.873 8 N -0.235 5.235 9 C -0.055 4.055 10 C -0.145 4.145 11 C -0.139 4.139 12 C 0.036 3.964 13 H 0.024 0.976 14 C -0.577 4.577 15 H 0.070 0.930 16 C -0.179 4.179 17 N -0.552 5.552 18 Si 0.775 3.225 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.033 4.033 23 N -0.219 5.219 24 C 0.025 3.975 25 N -0.204 5.204 26 H 0.157 0.843 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.177 0.823 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -11.919 -15.468 7.468 20.907 hybrid contribution -1.193 1.865 -1.020 2.437 sum -13.112 -13.604 6.448 19.964 Atomic orbital electron populations 1.23766 0.73429 1.06467 1.03144 1.86653 1.25677 1.30159 1.82548 1.20677 0.87339 0.82311 0.72710 1.90869 1.65940 1.36903 1.45699 1.20367 0.91795 0.89876 0.97853 1.23539 0.96917 1.00292 1.01267 1.20107 0.86924 0.91560 0.88742 1.58698 1.56855 1.02176 1.05756 1.22220 0.98047 0.93849 0.91411 1.21578 0.99591 0.95096 0.98237 1.21461 0.99153 0.99077 0.94250 1.18584 0.93926 0.90002 0.93870 0.97568 1.21410 1.19140 1.12867 1.04304 0.92969 1.25640 0.94208 0.98896 0.99141 1.70087 1.16332 1.27745 1.40991 0.85678 0.77675 0.79287 0.79832 1.20011 1.21060 1.19399 1.22124 0.98749 0.95469 0.86910 1.68167 1.43012 0.98752 1.12011 1.25882 0.86410 0.96350 0.88879 1.68495 1.09272 1.30322 1.12297 0.84308 0.91151 0.91424 0.82251 0.93129 0.89381 0.89603 0.92632 0.94220 0.93557 0.92924 0.92848 0.94436 0.73427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.56 113.37 1.20 1.52 16 2 O -0.34 -7.23 10.42 -55.52 -0.58 -7.80 16 3 C 0.53 13.67 7.97 70.52 0.56 14.23 16 4 O -0.51 -14.82 16.20 20.20 0.33 -14.50 16 5 C 0.15 3.97 6.78 41.82 0.28 4.25 16 6 C -0.19 -5.62 8.40 22.88 0.19 -5.43 16 7 C 0.37 11.79 5.71 133.28 0.76 12.55 16 8 N -0.51 -18.54 4.70 -701.36 -3.29 -21.84 16 9 C 0.07 2.23 5.06 86.33 0.44 2.66 16 10 C -0.11 -3.77 6.09 30.65 0.19 -3.58 16 11 C -0.10 -4.51 5.09 30.67 0.16 -4.35 16 12 C 0.06 2.73 2.13 -11.48 -0.02 2.70 16 13 H 0.01 0.35 8.09 -2.39 -0.02 0.33 16 14 C -0.54 -29.27 8.48 25.60 0.22 -29.06 16 15 H 0.05 2.79 7.77 -2.91 -0.02 2.77 16 16 C 0.02 1.14 5.22 84.65 0.44 1.59 16 17 N -0.91 -52.50 12.18 21.45 0.26 -52.24 16 18 Si 0.95 43.19 29.55 68.60 2.03 45.22 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 C 0.09 3.88 4.44 86.33 0.38 4.26 16 23 N -0.50 -15.11 10.45 -197.65 -2.07 -17.17 16 24 C 0.31 7.16 12.27 180.94 2.22 9.38 16 25 N -0.49 -12.13 10.25 -189.45 -1.94 -14.07 16 26 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.16 4.56 6.94 -2.91 -0.02 4.54 16 30 H 0.05 1.48 7.19 -2.39 -0.02 1.46 16 31 H 0.09 2.40 8.10 -2.39 -0.02 2.38 16 32 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 2.34 6.98 -2.39 -0.02 2.32 16 36 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.05 2.32 8.10 -2.39 -0.02 2.30 16 38 H 0.04 1.50 7.84 -2.39 -0.02 1.48 16 39 H 0.25 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -66.00 329.50 2.81 -63.19 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.06 Total: 8.47 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 7.01 Total: 10.74 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -7.04 Total: -105.31 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.25 Total: -22.30 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -66.00 2.81 -63.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603403149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.054 kcal (2) G-P(sol) polarization free energy of solvation -65.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds